| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-01-08 11:34 -0500 (Thu, 08 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-12-22 r89219) -- "Unsuffered Consequences" | 4815 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4593 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1386/2332 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MSstatsConvert 1.21.0 (landing page) Mateusz Staniak
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
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To the developers/maintainers of the MSstatsConvert package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MSstatsConvert.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MSstatsConvert |
| Version: 1.21.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL MSstatsConvert |
| StartedAt: 2026-01-07 15:02:36 -0500 (Wed, 07 Jan 2026) |
| EndedAt: 2026-01-07 15:02:48 -0500 (Wed, 07 Jan 2026) |
| EllapsedTime: 12.0 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL MSstatsConvert
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* installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’
* installing *source* package ‘MSstatsConvert’ ...
** this is package ‘MSstatsConvert’ version ‘1.21.0’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -Werror=format-security -c isolation_forest.cpp -o isolation_forest.o
In file included from /home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include/Rcpp.h:58,
from isolation_forest.cpp:7:
/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include/Rcpp/DataFrame.h: In instantiation of ‘int Rcpp::DataFrame_Impl<StoragePolicy>::nrow() const [with StoragePolicy = Rcpp::PreserveStorage]’:
/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include/Rcpp/DataFrame.h:92:59: required from ‘int Rcpp::DataFrame_Impl<StoragePolicy>::nrows() const [with StoragePolicy = Rcpp::PreserveStorage]’
isolation_forest.cpp:43:26: required from here
/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include/Rcpp/DataFrame.h:64:26: error: ‘R_nrow’ was not declared in this scope; did you mean ‘nrow’?
64 | return R_nrow( Parent::get__() );
| ~~~~~~^~~~~~~~~~~~~~~~~~~
| nrow
make: *** [/home/biocbuild/bbs-3.23-bioc/R/etc/Makeconf:209: isolation_forest.o] Error 1
ERROR: compilation failed for package ‘MSstatsConvert’
* removing ‘/home/biocbuild/bbs-3.23-bioc/R/site-library/MSstatsConvert’
* restoring previous ‘/home/biocbuild/bbs-3.23-bioc/R/site-library/MSstatsConvert’