Christian Mertes
| Snapshot Date: 2026-02-27 13:40 -0500 (Fri, 27 Feb 2026) |
| git_url: https://git.bioconductor.org/packages/OUTRIDER |
| git_branch: devel |
| git_last_commit: 00ca0e5 |
| git_last_commit_date: 2026-02-10 03:32:02 -0500 (Tue, 10 Feb 2026) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-02-28 11:35 -0500 (Sat, 28 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4877 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4570 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1533/2357 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OUTRIDER 1.29.1 (landing page) Christian Mertes
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for OUTRIDER in R Universe. | ||||||||||||||
|
To the developers/maintainers of the OUTRIDER package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OUTRIDER.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: OUTRIDER |
| Version: 1.29.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data OUTRIDER |
| StartedAt: 2026-02-27 17:15:59 -0500 (Fri, 27 Feb 2026) |
| EndedAt: 2026-02-27 17:16:39 -0500 (Fri, 27 Feb 2026) |
| EllapsedTime: 39.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data OUTRIDER
###
##############################################################################
##############################################################################
* checking for file ‘OUTRIDER/DESCRIPTION’ ... OK
* preparing ‘OUTRIDER’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘OUTRIDER.Rnw’ using knitr
2026-02-27 17:16:30.569 R[22767:41566636] XType: Using static font registry.
Quitting from OUTRIDER.Rnw:181-202 [quick_guide]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 4/4 in VECTOR_ELT
---
Backtrace:
x
1. +-OUTRIDER::plotQQ(ods, res[1, geneID])
2. \-OUTRIDER::plotQQ(ods, res[1, geneID])
3. \-OUTRIDER (local) .local(object, ...)
4. +-df[, `:=`(exp, -log10(ppoints(.N))), by = "subset"]
5. \-data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'OUTRIDER.Rnw' failed with diagnostics:
attempt access index 4/4 in VECTOR_ELT
--- failed re-building ‘OUTRIDER.Rnw’
SUMMARY: processing the following file failed:
‘OUTRIDER.Rnw’
Error: Vignette re-building failed.
Execution halted