| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-02-17 11:32 -0500 (Tue, 17 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4865 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1499/2352 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OmicsMLRepoR 1.5.3 (landing page) Sehyun Oh
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for OmicsMLRepoR in R Universe. | ||||||||||||||
|
To the developers/maintainers of the OmicsMLRepoR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OmicsMLRepoR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: OmicsMLRepoR |
| Version: 1.5.3 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data OmicsMLRepoR |
| StartedAt: 2026-02-16 19:13:02 -0500 (Mon, 16 Feb 2026) |
| EndedAt: 2026-02-16 19:13:28 -0500 (Mon, 16 Feb 2026) |
| EllapsedTime: 26.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data OmicsMLRepoR
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* checking for file ‘OmicsMLRepoR/DESCRIPTION’ ... OK
* preparing ‘OmicsMLRepoR’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘Quickstart.Rmd’ using rmarkdown
Quitting from Quickstart.Rmd:61-64 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `BiocFileCache::bfcdownload()`:
! !missing(rid) is not TRUE
---
Backtrace:
▆
1. └─OmicsMLRepoR::getMetadata("cMD")
2. └─OmicsMLRepoR:::s2p_cached_url(fpath)
3. ├─BiocFileCache::bfcdownload(bfc, rids = rid, ask = ask_on_update)
4. └─BiocFileCache::bfcdownload(bfc, rids = rid, ask = ask_on_update)
5. └─base::stopifnot(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Quickstart.Rmd' failed with diagnostics:
!missing(rid) is not TRUE
--- failed re-building ‘Quickstart.Rmd’
SUMMARY: processing the following file failed:
‘Quickstart.Rmd’
Error: Vignette re-building failed.
Execution halted