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This page was generated on 2026-03-12 11:34 -0400 (Thu, 12 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" 4806
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" 4049
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1738/2360HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rcpi 1.47.0  (landing page)
Nan Xiao
Snapshot Date: 2026-03-11 13:40 -0400 (Wed, 11 Mar 2026)
git_url: https://git.bioconductor.org/packages/Rcpi
git_branch: devel
git_last_commit: d010cbe
git_last_commit_date: 2025-10-29 10:18:37 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for Rcpi in R Universe.


CHECK results for Rcpi on kjohnson3

To the developers/maintainers of the Rcpi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rcpi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rcpi
Version: 1.47.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
StartedAt: 2026-03-11 20:03:01 -0400 (Wed, 11 Mar 2026)
EndedAt: 2026-03-11 20:03:55 -0400 (Wed, 11 Mar 2026)
EllapsedTime: 54.0 seconds
RetCode: 0
Status:   OK  
CheckDir: Rcpi.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/Rcpi.Rcheck’
* using R Under development (unstable) (2026-03-01 r89506)
* using platform: aarch64-apple-darwin23
* R was compiled by
    Apple clang version 17.0.0 (clang-1700.3.19.1)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Sonoma 14.8.3
* using session charset: UTF-8
* current time: 2026-03-12 00:03:01 UTC
* using option ‘--no-vignettes’
* checking for file ‘Rcpi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rcpi’ version ‘1.47.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rcpi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

Rcpi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rcpi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘Rcpi’ ...
** this is package ‘Rcpi’ version ‘1.47.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpi)

Tests output

Rcpi.Rcheck/tests/testthat.Rout


R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Rcpi)

> 
> test_check("Rcpi")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
> 
> proc.time()
   user  system elapsed 
  2.797   0.286   2.443 

Example timings

Rcpi.Rcheck/Rcpi-Ex.timings

nameusersystemelapsed
AA2DACOR0.0010.0000.001
AA3DMoRSE000
AAACF0.0000.0010.001
AABLOSUM1000.0000.0000.001
AABLOSUM450.0010.0010.000
AABLOSUM50000
AABLOSUM620.0000.0000.001
AABLOSUM800.0000.0000.001
AABurden000
AACPSA0.0000.0010.000
AAConn000
AAConst0.0000.0000.001
AADescAll0.0000.0000.001
AAEdgeAdj0.0000.0000.001
AAEigIdx0.0010.0000.000
AAFGC000
AAGETAWAY0.0000.0000.001
AAGeom0.0010.0010.001
AAInfo000
AAMOE2D0.0000.0010.000
AAMOE3D0.0000.0000.001
AAMetaInfo0.0000.0010.001
AAMolProp000
AAPAM120000
AAPAM2500.0010.0010.001
AAPAM30000
AAPAM400.0000.0010.000
AAPAM700.0000.0000.001
AARDF0.0000.0000.001
AARandic000
AATopo000
AATopoChg0.0000.0000.001
AAWHIM0.0000.0010.001
AAWalk0.0000.0000.001
AAindex0.0000.0010.001
OptAA3d000
acc0.0040.0020.007
calcDrugFPSim000
calcDrugMCSSim0.0090.0010.011
calcParProtGOSim000
calcParProtSeqSim0.0030.0010.003
calcTwoProtGOSim000
calcTwoProtSeqSim0.0000.0000.001
checkProt0.0000.0010.001
convMolFormat0.0000.0000.001
extractDrugAIO000
extractDrugALOGP0.0000.0010.000
extractDrugAminoAcidCount0.0000.0000.001
extractDrugApol000
extractDrugAromaticAtomsCount000
extractDrugAromaticBondsCount000
extractDrugAtomCount0.0010.0000.000
extractDrugAutocorrelationCharge000
extractDrugAutocorrelationMass000
extractDrugAutocorrelationPolarizability0.0010.0010.000
extractDrugBCUT000
extractDrugBPol0.0000.0000.001
extractDrugBondCount0.0010.0000.000
extractDrugCPSA0.0000.0000.001
extractDrugCarbonTypes000
extractDrugChiChain0.0000.0000.001
extractDrugChiCluster000
extractDrugChiPath000
extractDrugChiPathCluster0.0000.0000.001
extractDrugDescOB0.0010.0010.003
extractDrugECI0.0010.0010.000
extractDrugEstate0.0000.0000.001
extractDrugEstateComplete000
extractDrugExtended0.0010.0000.001
extractDrugExtendedComplete000
extractDrugFMF0.0000.0000.001
extractDrugFragmentComplexity000
extractDrugGraph0.0000.0000.001
extractDrugGraphComplete0.0000.0010.000
extractDrugGravitationalIndex000
extractDrugHBondAcceptorCount0.0010.0000.001
extractDrugHBondDonorCount000
extractDrugHybridization0.0000.0010.001
extractDrugHybridizationComplete0.0010.0000.000
extractDrugHybridizationRatio0.0000.0000.001
extractDrugIPMolecularLearning000
extractDrugKR0.0000.0000.001
extractDrugKRComplete000
extractDrugKappaShapeIndices0.0000.0000.001
extractDrugKierHallSmarts000
extractDrugLargestChain0.0010.0000.001
extractDrugLargestPiSystem000
extractDrugLengthOverBreadth0.0000.0000.001
extractDrugLongestAliphaticChain0.0010.0000.000
extractDrugMACCS0.0000.0000.001
extractDrugMACCSComplete000
extractDrugMDE0.0000.0010.000
extractDrugMannholdLogP000
extractDrugMomentOfInertia000
extractDrugOBFP20.0460.0020.047
extractDrugOBFP30.0020.0010.002
extractDrugOBFP40.0040.0010.005
extractDrugOBMACCS0.0020.0010.003
extractDrugPetitjeanNumber0.0000.0000.001
extractDrugPetitjeanShapeIndex0.0010.0000.000
extractDrugPubChem0.0000.0000.001
extractDrugPubChemComplete000
extractDrugRotatableBondsCount0.0000.0000.001
extractDrugRuleOfFive000
extractDrugShortestPath0.0000.0000.001
extractDrugShortestPathComplete000
extractDrugStandard0.0010.0010.000
extractDrugStandardComplete0.0000.0000.001
extractDrugTPSA0.0000.0000.001
extractDrugVABC0.0000.0010.000
extractDrugVAdjMa000
extractDrugWHIM0.0000.0000.001
extractDrugWeight0.0000.0000.001
extractDrugWeightedPath0.0000.0000.001
extractDrugWienerNumbers0.0010.0010.001
extractDrugXLogP0.0000.0000.001
extractDrugZagrebIndex0.0000.0000.001
extractPCMBLOSUM0.0030.0010.004
extractPCMDescScales0.0040.0010.005
extractPCMFAScales0.0090.0010.010
extractPCMMDSScales0.0030.0010.004
extractPCMPropScales0.0040.0010.007
extractPCMScales0.0060.0010.006
extractProtAAC0.0010.0000.001
extractProtAPAAC0.2630.0060.270
extractProtCTDC0.0010.0000.001
extractProtCTDD0.0020.0010.003
extractProtCTDT0.0020.0000.002
extractProtCTriad0.0290.0030.032
extractProtDC0.0010.0020.003
extractProtGeary0.0380.0030.046
extractProtMoran0.0420.0030.045
extractProtMoreauBroto0.0330.0030.036
extractProtPAAC0.1280.0010.131
extractProtPSSM0.0000.0000.001
extractProtPSSMAcc0.0010.0010.000
extractProtPSSMFeature000
extractProtQSO0.2130.0030.218
extractProtSOCN0.2210.0040.236
extractProtTC0.0110.0330.044
getCPI0.0010.0000.001
getDrug000
getFASTAFromKEGG000
getFASTAFromUniProt000
getMolFromCAS000
getMolFromChEMBL000
getMolFromDrugBank000
getMolFromKEGG0.0000.0010.000
getMolFromPubChem000
getPDBFromRCSBPDB000
getPPI0.0010.0000.001
getProt000
getSeqFromKEGG000
getSeqFromRCSBPDB000
getSeqFromUniProt000
getSmiFromChEMBL000
getSmiFromDrugBank000
getSmiFromKEGG000
getSmiFromPubChem0.0000.0010.000
readFASTA0.0010.0000.001
readMolFromSDF0.0000.0000.001
readMolFromSmi0.0010.0010.000
readPDB0.2730.0020.289
searchDrug0.0010.0010.002
segProt0.0000.0010.001