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This page was generated on 2026-05-26 11:36 -0400 (Tue, 26 May 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4938
kjohnson3macOS 13.7.7 Venturaarm644.6.0 Patched (2026-05-01 r89994) -- "Because it was There" 4640
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1750/2379HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rcpi 1.49.0  (landing page)
Nan Xiao
Snapshot Date: 2026-05-25 13:45 -0400 (Mon, 25 May 2026)
git_url: https://git.bioconductor.org/packages/Rcpi
git_branch: devel
git_last_commit: afbe65a
git_last_commit_date: 2026-04-28 08:38:50 -0400 (Tue, 28 Apr 2026)
nebbiolo2Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK  UNNEEDED, same version is already published
See other builds for Rcpi in R Universe.


CHECK results for Rcpi on kjohnson3

To the developers/maintainers of the Rcpi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rcpi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rcpi
Version: 1.49.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.49.0.tar.gz
StartedAt: 2026-05-25 21:18:29 -0400 (Mon, 25 May 2026)
EndedAt: 2026-05-25 21:19:19 -0400 (Mon, 25 May 2026)
EllapsedTime: 49.7 seconds
RetCode: 0
Status:   OK  
CheckDir: Rcpi.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.49.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.24-bioc/meat/Rcpi.Rcheck’
* using R version 4.6.0 Patched (2026-05-01 r89994)
* using platform: aarch64-apple-darwin23
* R was compiled by
    Apple clang version 17.0.0 (clang-1700.3.19.1)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-05-26 01:18:30 UTC
* using option ‘--no-vignettes’
* checking for file ‘Rcpi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rcpi’ version ‘1.49.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rcpi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

Rcpi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rcpi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘Rcpi’ ...
** this is package ‘Rcpi’ version ‘1.49.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpi)

Tests output

Rcpi.Rcheck/tests/testthat.Rout


R version 4.6.0 Patched (2026-05-01 r89994) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Rcpi)

> 
> test_check("Rcpi")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
> 
> proc.time()
   user  system elapsed 
  2.403   0.221   2.173 

Example timings

Rcpi.Rcheck/Rcpi-Ex.timings

nameusersystemelapsed
AA2DACOR0.0010.0000.001
AA3DMoRSE0.0000.0000.001
AAACF0.0000.0010.000
AABLOSUM100000
AABLOSUM450.0000.0000.001
AABLOSUM500.0010.0010.000
AABLOSUM62000
AABLOSUM800.0000.0000.001
AABurden0.0000.0010.000
AACPSA0.0000.0000.001
AAConn000
AAConst0.0000.0010.000
AADescAll0.0010.0000.001
AAEdgeAdj000
AAEigIdx0.0000.0010.000
AAFGC0.0000.0000.001
AAGETAWAY0.0010.0000.000
AAGeom0.0000.0000.001
AAInfo0.0000.0000.001
AAMOE2D0.0010.0010.000
AAMOE3D0.0000.0000.001
AAMetaInfo000
AAMolProp0.0000.0010.000
AAPAM1200.0010.0000.001
AAPAM250000
AAPAM300.0000.0010.000
AAPAM400.0000.0000.001
AAPAM700.0000.0010.001
AARDF000
AARandic0.0000.0010.000
AATopo0.0010.0000.001
AATopoChg000
AAWHIM0.0000.0010.000
AAWalk0.0010.0010.001
AAindex0.0000.0000.002
OptAA3d000
acc0.0030.0020.009
calcDrugFPSim000
calcDrugMCSSim0.0070.0010.008
calcParProtGOSim000
calcParProtSeqSim0.0020.0010.003
calcTwoProtGOSim000
calcTwoProtSeqSim0.0000.0000.001
checkProt000
convMolFormat0.0000.0010.000
extractDrugAIO0.0000.0000.001
extractDrugALOGP000
extractDrugAminoAcidCount0.0010.0000.001
extractDrugApol0.0000.0010.000
extractDrugAromaticAtomsCount0.0000.0000.001
extractDrugAromaticBondsCount0.0010.0000.000
extractDrugAtomCount0.0000.0000.001
extractDrugAutocorrelationCharge000
extractDrugAutocorrelationMass0.0000.0010.001
extractDrugAutocorrelationPolarizability0.0010.0000.000
extractDrugBCUT0.0000.0000.001
extractDrugBPol000
extractDrugBondCount0.0010.0000.001
extractDrugCPSA000
extractDrugCarbonTypes0.0000.0000.001
extractDrugChiChain000
extractDrugChiCluster0.0000.0000.001
extractDrugChiPath0.0000.0010.000
extractDrugChiPathCluster0.0000.0000.001
extractDrugDescOB0.0020.0010.003
extractDrugECI0.0010.0000.001
extractDrugEstate000
extractDrugEstateComplete0.0000.0000.001
extractDrugExtended0.0010.0010.000
extractDrugExtendedComplete0.0000.0000.001
extractDrugFMF000
extractDrugFragmentComplexity0.0000.0000.001
extractDrugGraph000
extractDrugGraphComplete0.0000.0010.001
extractDrugGravitationalIndex000
extractDrugHBondAcceptorCount0.0000.0000.001
extractDrugHBondDonorCount000
extractDrugHybridization0.0000.0010.000
extractDrugHybridizationComplete0.0010.0000.000
extractDrugHybridizationRatio0.0010.0000.001
extractDrugIPMolecularLearning0.0000.0000.001
extractDrugKR0.0010.0000.001
extractDrugKRComplete000
extractDrugKappaShapeIndices0.0000.0010.000
extractDrugKierHallSmarts000
extractDrugLargestChain000
extractDrugLargestPiSystem000
extractDrugLengthOverBreadth000
extractDrugLongestAliphaticChain0.0000.0000.001
extractDrugMACCS0.0010.0000.000
extractDrugMACCSComplete0.0000.0000.001
extractDrugMDE000
extractDrugMannholdLogP0.0000.0000.001
extractDrugMomentOfInertia0.0010.0000.001
extractDrugOBFP20.0340.0000.035
extractDrugOBFP30.0020.0000.002
extractDrugOBFP40.0040.0010.004
extractDrugOBMACCS0.0020.0000.003
extractDrugPetitjeanNumber000
extractDrugPetitjeanShapeIndex0.0010.0000.001
extractDrugPubChem000
extractDrugPubChemComplete000
extractDrugRotatableBondsCount0.0000.0000.001
extractDrugRuleOfFive000
extractDrugShortestPath0.0000.0010.001
extractDrugShortestPathComplete000
extractDrugStandard0.0010.0000.000
extractDrugStandardComplete000
extractDrugTPSA000
extractDrugVABC0.0010.0000.001
extractDrugVAdjMa000
extractDrugWHIM0.0000.0010.001
extractDrugWeight000
extractDrugWeightedPath000
extractDrugWienerNumbers0.0000.0000.001
extractDrugXLogP000
extractDrugZagrebIndex0.0010.0000.001
extractPCMBLOSUM0.0040.0010.005
extractPCMDescScales0.0040.0010.005
extractPCMFAScales0.0100.0010.012
extractPCMMDSScales0.0030.0010.004
extractPCMPropScales0.0030.0010.005
extractPCMScales0.0050.0010.006
extractProtAAC0.0000.0000.001
extractProtAPAAC0.2600.0040.264
extractProtCTDC0.0010.0000.002
extractProtCTDD0.0010.0010.002
extractProtCTDT0.0020.0010.002
extractProtCTriad0.0300.0020.032
extractProtDC0.0010.0030.004
extractProtGeary0.0400.0020.042
extractProtMoran0.0390.0020.042
extractProtMoreauBroto0.0350.0020.038
extractProtPAAC0.1180.0020.120
extractProtPSSM0.0000.0000.001
extractProtPSSMAcc000
extractProtPSSMFeature0.0000.0000.001
extractProtQSO0.2130.0050.218
extractProtSOCN0.2050.0010.208
extractProtTC0.0100.0380.061
getCPI0.0000.0000.002
getDrug000
getFASTAFromKEGG000
getFASTAFromUniProt000
getMolFromCAS000
getMolFromChEMBL000
getMolFromDrugBank000
getMolFromKEGG000
getMolFromPubChem000
getPDBFromRCSBPDB000
getPPI0.0000.0010.001
getProt000
getSeqFromKEGG000
getSeqFromRCSBPDB0.0000.0000.001
getSeqFromUniProt000
getSmiFromChEMBL000
getSmiFromDrugBank0.0000.0000.001
getSmiFromKEGG000
getSmiFromPubChem000
readFASTA0.0000.0000.001
readMolFromSDF0.0010.0010.001
readMolFromSmi000
readPDB0.2420.0020.244
searchDrug0.0000.0010.001
segProt0.0010.0000.001