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This page was generated on 2026-03-10 11:33 -0400 (Tue, 10 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" 4522
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" 2847
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1738/2360HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rcpi 1.47.0  (landing page)
Nan Xiao
Snapshot Date: 2026-03-09 13:40 -0400 (Mon, 09 Mar 2026)
git_url: https://git.bioconductor.org/packages/Rcpi
git_branch: devel
git_last_commit: d010cbe
git_last_commit_date: 2025-10-29 10:18:37 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for Rcpi in R Universe.


CHECK results for Rcpi on kjohnson3

To the developers/maintainers of the Rcpi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rcpi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rcpi
Version: 1.47.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
StartedAt: 2026-03-09 16:31:57 -0400 (Mon, 09 Mar 2026)
EndedAt: 2026-03-09 16:32:47 -0400 (Mon, 09 Mar 2026)
EllapsedTime: 50.0 seconds
RetCode: 0
Status:   OK  
CheckDir: Rcpi.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/Rcpi.Rcheck’
* using R Under development (unstable) (2026-03-01 r89506)
* using platform: aarch64-apple-darwin23
* R was compiled by
    Apple clang version 17.0.0 (clang-1700.3.19.1)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Sonoma 14.8.3
* using session charset: UTF-8
* current time: 2026-03-09 20:31:57 UTC
* using option ‘--no-vignettes’
* checking for file ‘Rcpi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rcpi’ version ‘1.47.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rcpi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

Rcpi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rcpi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘Rcpi’ ...
** this is package ‘Rcpi’ version ‘1.47.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpi)

Tests output

Rcpi.Rcheck/tests/testthat.Rout


R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Rcpi)

> 
> test_check("Rcpi")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
> 
> proc.time()
   user  system elapsed 
  2.287   0.228   2.137 

Example timings

Rcpi.Rcheck/Rcpi-Ex.timings

nameusersystemelapsed
AA2DACOR0.0010.0000.001
AA3DMoRSE000
AAACF0.0000.0000.001
AABLOSUM1000.0000.0000.001
AABLOSUM450.0000.0010.000
AABLOSUM50000
AABLOSUM620.0000.0010.001
AABLOSUM80000
AABurden0.0010.0000.000
AACPSA0.0000.0000.001
AAConn0.0000.0000.001
AAConst0.0000.0010.000
AADescAll000
AAEdgeAdj0.0000.0010.001
AAEigIdx0.0000.0000.001
AAFGC0.0010.0010.000
AAGETAWAY000
AAGeom0.0000.0000.001
AAInfo000
AAMOE2D0.0010.0000.000
AAMOE3D0.0000.0010.001
AAMetaInfo0.0000.0000.001
AAMolProp0.0000.0010.000
AAPAM1200.0000.0000.001
AAPAM2500.0000.0000.001
AAPAM300.0000.0010.000
AAPAM400.0010.0000.001
AAPAM700.0000.0010.001
AARDF000
AARandic000
AATopo0.0010.0010.001
AATopoChg000
AAWHIM0.0000.0000.001
AAWalk0.0000.0000.001
AAindex000
OptAA3d000
acc0.0030.0020.004
calcDrugFPSim0.0000.0010.000
calcDrugMCSSim0.0070.0010.009
calcParProtGOSim000
calcParProtSeqSim0.0020.0010.004
calcTwoProtGOSim000
calcTwoProtSeqSim0.0010.0010.000
checkProt000
convMolFormat0.0000.0000.001
extractDrugAIO0.0010.0000.000
extractDrugALOGP0.0000.0000.001
extractDrugAminoAcidCount000
extractDrugApol0.0010.0000.001
extractDrugAromaticAtomsCount000
extractDrugAromaticBondsCount0.0000.0000.001
extractDrugAtomCount0.0000.0010.000
extractDrugAutocorrelationCharge0.0000.0000.001
extractDrugAutocorrelationMass000
extractDrugAutocorrelationPolarizability0.0000.0000.001
extractDrugBCUT0.0010.0010.000
extractDrugBPol0.0000.0000.001
extractDrugBondCount000
extractDrugCPSA0.0010.0000.001
extractDrugCarbonTypes000
extractDrugChiChain0.0000.0010.001
extractDrugChiCluster000
extractDrugChiPath000
extractDrugChiPathCluster000
extractDrugDescOB0.0020.0010.003
extractDrugECI0.0000.0010.001
extractDrugEstate0.0010.0000.000
extractDrugEstateComplete0.0000.0000.001
extractDrugExtended000
extractDrugExtendedComplete0.0010.0000.001
extractDrugFMF0.0000.0010.000
extractDrugFragmentComplexity0.0000.0000.001
extractDrugGraph0.0010.0000.000
extractDrugGraphComplete0.0000.0000.001
extractDrugGravitationalIndex000
extractDrugHBondAcceptorCount000
extractDrugHBondDonorCount000
extractDrugHybridization000
extractDrugHybridizationComplete000
extractDrugHybridizationRatio0.0010.0000.000
extractDrugIPMolecularLearning000
extractDrugKR000
extractDrugKRComplete0.0010.0000.000
extractDrugKappaShapeIndices000
extractDrugKierHallSmarts0.0000.0000.001
extractDrugLargestChain0.0010.0000.000
extractDrugLargestPiSystem0.0000.0000.001
extractDrugLengthOverBreadth000
extractDrugLongestAliphaticChain0.0010.0000.001
extractDrugMACCS000
extractDrugMACCSComplete0.0000.0000.001
extractDrugMDE000
extractDrugMannholdLogP0.0000.0000.001
extractDrugMomentOfInertia000
extractDrugOBFP20.0350.0010.036
extractDrugOBFP30.0020.0010.003
extractDrugOBFP40.0030.0010.004
extractDrugOBMACCS0.0020.0010.003
extractDrugPetitjeanNumber000
extractDrugPetitjeanShapeIndex000
extractDrugPubChem000
extractDrugPubChemComplete000
extractDrugRotatableBondsCount0.0010.0000.000
extractDrugRuleOfFive000
extractDrugShortestPath000
extractDrugShortestPathComplete0.0010.0010.000
extractDrugStandard000
extractDrugStandardComplete000
extractDrugTPSA0.0000.0000.001
extractDrugVABC0.0000.0010.000
extractDrugVAdjMa0.0000.0000.001
extractDrugWHIM000
extractDrugWeight000
extractDrugWeightedPath0.0000.0010.001
extractDrugWienerNumbers0.0010.0000.000
extractDrugXLogP0.0000.0000.001
extractDrugZagrebIndex000
extractPCMBLOSUM0.0040.0010.005
extractPCMDescScales0.0040.0010.004
extractPCMFAScales0.0070.0010.009
extractPCMMDSScales0.0030.0010.004
extractPCMPropScales0.0040.0000.004
extractPCMScales0.0050.0010.005
extractProtAAC0.0010.0010.001
extractProtAPAAC0.2570.0060.264
extractProtCTDC0.0010.0000.001
extractProtCTDD0.0010.0010.002
extractProtCTDT0.0020.0000.002
extractProtCTriad0.0290.0040.031
extractProtDC0.0010.0010.002
extractProtGeary0.0390.0040.043
extractProtMoran0.0370.0030.040
extractProtMoreauBroto0.0340.0030.036
extractProtPAAC0.1160.0020.118
extractProtPSSM0.0010.0000.000
extractProtPSSMAcc0.0000.0010.000
extractProtPSSMFeature0.0000.0000.001
extractProtQSO0.2120.0040.218
extractProtSOCN0.2080.0030.211
extractProtTC0.0090.0440.054
getCPI0.0000.0010.001
getDrug000
getFASTAFromKEGG000
getFASTAFromUniProt000
getMolFromCAS000
getMolFromChEMBL000
getMolFromDrugBank000
getMolFromKEGG0.0010.0000.000
getMolFromPubChem000
getPDBFromRCSBPDB000
getPPI0.0010.0010.002
getProt000
getSeqFromKEGG000
getSeqFromRCSBPDB000
getSeqFromUniProt000
getSmiFromChEMBL000
getSmiFromDrugBank000
getSmiFromKEGG000
getSmiFromPubChem000
readFASTA0.0000.0000.001
readMolFromSDF0.0000.0000.002
readMolFromSmi0.0010.0000.000
readPDB0.2460.0020.250
searchDrug0.0010.0010.001
segProt0.0010.0010.002