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This page was generated on 2026-02-28 11:35 -0500 (Sat, 28 Feb 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4877
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4570
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1735/2357HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rcpi 1.47.0  (landing page)
Nan Xiao
Snapshot Date: 2026-02-27 13:40 -0500 (Fri, 27 Feb 2026)
git_url: https://git.bioconductor.org/packages/Rcpi
git_branch: devel
git_last_commit: d010cbe
git_last_commit_date: 2025-10-29 10:18:37 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for Rcpi in R Universe.


CHECK results for Rcpi on kjohnson3

To the developers/maintainers of the Rcpi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rcpi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rcpi
Version: 1.47.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
StartedAt: 2026-02-27 21:57:21 -0500 (Fri, 27 Feb 2026)
EndedAt: 2026-02-27 21:58:16 -0500 (Fri, 27 Feb 2026)
EllapsedTime: 55.9 seconds
RetCode: 0
Status:   OK  
CheckDir: Rcpi.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/Rcpi.Rcheck’
* using R Under development (unstable) (2026-01-15 r89304)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Sonoma 14.8.3
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Rcpi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rcpi’ version ‘1.47.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rcpi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

Rcpi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rcpi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’
* installing *source* package ‘Rcpi’ ...
** this is package ‘Rcpi’ version ‘1.47.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpi)

Tests output

Rcpi.Rcheck/tests/testthat.Rout


R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Rcpi)

> 
> test_check("Rcpi")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
> 
> proc.time()
   user  system elapsed 
  2.817   0.242   2.462 

Example timings

Rcpi.Rcheck/Rcpi-Ex.timings

nameusersystemelapsed
AA2DACOR0.0010.0000.001
AA3DMoRSE0.0000.0000.001
AAACF0.0000.0000.001
AABLOSUM1000.0000.0010.001
AABLOSUM450.0000.0010.001
AABLOSUM500.0000.0000.001
AABLOSUM620.0000.0000.001
AABLOSUM800.0010.0010.001
AABurden0.0000.0000.001
AACPSA0.0000.0010.000
AAConn0.0010.0000.000
AAConst000
AADescAll0.0000.0000.001
AAEdgeAdj0.0000.0000.001
AAEigIdx0.0010.0010.000
AAFGC0.0000.0000.001
AAGETAWAY0.0000.0010.001
AAGeom000
AAInfo0.0000.0010.000
AAMOE2D0.0000.0000.001
AAMOE3D0.0000.0010.001
AAMetaInfo0.0000.0000.001
AAMolProp0.0000.0010.000
AAPAM120000
AAPAM250000
AAPAM300.0010.0000.001
AAPAM400.0000.0010.000
AAPAM70000
AARDF0.0000.0010.001
AARandic0.0010.0000.000
AATopo000
AATopoChg0.0000.0010.001
AAWHIM000
AAWalk0.0000.0010.000
AAindex0.0000.0000.001
OptAA3d000
acc0.0030.0020.005
calcDrugFPSim000
calcDrugMCSSim0.0090.0010.010
calcParProtGOSim0.0000.0000.001
calcParProtSeqSim0.0020.0010.003
calcTwoProtGOSim0.0000.0010.000
calcTwoProtSeqSim0.0000.0000.001
checkProt0.0010.0000.000
convMolFormat000
extractDrugAIO0.0000.0010.001
extractDrugALOGP000
extractDrugAminoAcidCount0.0000.0000.001
extractDrugApol000
extractDrugAromaticAtomsCount0.0000.0000.001
extractDrugAromaticBondsCount0.0010.0000.000
extractDrugAtomCount000
extractDrugAutocorrelationCharge000
extractDrugAutocorrelationMass000
extractDrugAutocorrelationPolarizability0.0010.0000.000
extractDrugBCUT000
extractDrugBPol000
extractDrugBondCount0.0010.0000.001
extractDrugCPSA000
extractDrugCarbonTypes0.0000.0010.001
extractDrugChiChain0.0010.0000.001
extractDrugChiCluster0.0000.0000.001
extractDrugChiPath0.0010.0010.000
extractDrugChiPathCluster000
extractDrugDescOB0.0020.0010.003
extractDrugECI000
extractDrugEstate0.0010.0000.001
extractDrugEstateComplete0.0000.0010.000
extractDrugExtended000
extractDrugExtendedComplete000
extractDrugFMF000
extractDrugFragmentComplexity0.0000.0010.001
extractDrugGraph0.0010.0000.000
extractDrugGraphComplete0.0000.0000.001
extractDrugGravitationalIndex000
extractDrugHBondAcceptorCount0.0010.0010.000
extractDrugHBondDonorCount000
extractDrugHybridization000
extractDrugHybridizationComplete0.0010.0000.001
extractDrugHybridizationRatio000
extractDrugIPMolecularLearning0.0000.0000.001
extractDrugKR000
extractDrugKRComplete0.0000.0000.001
extractDrugKappaShapeIndices000
extractDrugKierHallSmarts000
extractDrugLargestChain0.0010.0000.000
extractDrugLargestPiSystem0.0000.0000.001
extractDrugLengthOverBreadth000
extractDrugLongestAliphaticChain0.0000.0010.001
extractDrugMACCS000
extractDrugMACCSComplete0.0000.0000.001
extractDrugMDE000
extractDrugMannholdLogP0.0010.0010.000
extractDrugMomentOfInertia000
extractDrugOBFP20.0040.0010.005
extractDrugOBFP30.0020.0010.002
extractDrugOBFP40.0430.0020.049
extractDrugOBMACCS0.0010.0010.003
extractDrugPetitjeanNumber0.0000.0010.001
extractDrugPetitjeanShapeIndex000
extractDrugPubChem0.0010.0000.000
extractDrugPubChemComplete0.0000.0000.001
extractDrugRotatableBondsCount0.0000.0010.000
extractDrugRuleOfFive0.0000.0000.001
extractDrugShortestPath000
extractDrugShortestPathComplete0.0000.0000.001
extractDrugStandard0.0000.0010.000
extractDrugStandardComplete0.0010.0000.000
extractDrugTPSA000
extractDrugVABC000
extractDrugVAdjMa0.0000.0010.000
extractDrugWHIM000
extractDrugWeight000
extractDrugWeightedPath000
extractDrugWienerNumbers0.0010.0000.000
extractDrugXLogP0.0000.0010.000
extractDrugZagrebIndex000
extractPCMBLOSUM0.0040.0010.004
extractPCMDescScales0.0050.0000.006
extractPCMFAScales0.0120.0030.016
extractPCMMDSScales0.0030.0000.004
extractPCMPropScales0.0040.0010.005
extractPCMScales0.0050.0010.007
extractProtAAC0.0010.0010.001
extractProtAPAAC0.2550.0070.283
extractProtCTDC0.0010.0000.001
extractProtCTDD0.0010.0010.002
extractProtCTDT0.0010.0000.002
extractProtCTriad0.0300.0030.036
extractProtDC0.0020.0020.003
extractProtGeary0.0380.0040.044
extractProtMoran0.0400.0030.051
extractProtMoreauBroto0.0360.0030.044
extractProtPAAC0.1190.0030.125
extractProtPSSM0.0000.0000.001
extractProtPSSMAcc000
extractProtPSSMFeature0.0000.0010.000
extractProtQSO0.2240.0050.232
extractProtSOCN0.2150.0040.227
extractProtTC0.0100.0310.047
getCPI0.0010.0010.002
getDrug000
getFASTAFromKEGG0.0000.0000.001
getFASTAFromUniProt000
getMolFromCAS000
getMolFromChEMBL0.0000.0010.000
getMolFromDrugBank000
getMolFromKEGG000
getMolFromPubChem0.0010.0000.000
getPDBFromRCSBPDB000
getPPI0.0010.0010.002
getProt000
getSeqFromKEGG000
getSeqFromRCSBPDB0.0000.0010.001
getSeqFromUniProt000
getSmiFromChEMBL000
getSmiFromDrugBank000
getSmiFromKEGG000
getSmiFromPubChem000
readFASTA0.0000.0010.001
readMolFromSDF0.0010.0000.001
readMolFromSmi0.0000.0000.001
readPDB0.2770.0020.302
searchDrug0.0000.0000.001
segProt0.0010.0020.003