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This page was generated on 2026-03-05 11:35 -0500 (Thu, 05 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4891
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4583
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1735/2357HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rcpi 1.47.0  (landing page)
Nan Xiao
Snapshot Date: 2026-03-04 13:40 -0500 (Wed, 04 Mar 2026)
git_url: https://git.bioconductor.org/packages/Rcpi
git_branch: devel
git_last_commit: d010cbe
git_last_commit_date: 2025-10-29 10:18:37 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for Rcpi in R Universe.


CHECK results for Rcpi on kjohnson3

To the developers/maintainers of the Rcpi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rcpi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rcpi
Version: 1.47.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
StartedAt: 2026-03-04 21:41:34 -0500 (Wed, 04 Mar 2026)
EndedAt: 2026-03-04 21:42:30 -0500 (Wed, 04 Mar 2026)
EllapsedTime: 55.8 seconds
RetCode: 0
Status:   OK  
CheckDir: Rcpi.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/Rcpi.Rcheck’
* using R Under development (unstable) (2026-01-15 r89304)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Sonoma 14.8.3
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Rcpi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rcpi’ version ‘1.47.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rcpi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

Rcpi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rcpi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’
* installing *source* package ‘Rcpi’ ...
** this is package ‘Rcpi’ version ‘1.47.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpi)

Tests output

Rcpi.Rcheck/tests/testthat.Rout


R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Rcpi)

> 
> test_check("Rcpi")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
> 
> proc.time()
   user  system elapsed 
  2.837   0.244   2.453 

Example timings

Rcpi.Rcheck/Rcpi-Ex.timings

nameusersystemelapsed
AA2DACOR0.0010.0000.001
AA3DMoRSE0.0000.0000.002
AAACF0.0010.0010.001
AABLOSUM1000.0000.0010.001
AABLOSUM450.0000.0000.001
AABLOSUM500.0010.0010.001
AABLOSUM62000
AABLOSUM800.0000.0010.000
AABurden0.0000.0000.001
AACPSA0.0000.0000.001
AAConn000
AAConst0.0000.0010.000
AADescAll0.0010.0000.000
AAEdgeAdj0.0000.0010.000
AAEigIdx0.0000.0000.001
AAFGC0.0000.0000.001
AAGETAWAY0.0010.0000.001
AAGeom000
AAInfo000
AAMOE2D0.0000.0000.001
AAMOE3D0.0000.0000.001
AAMetaInfo000
AAMolProp000
AAPAM1200.0010.0000.001
AAPAM2500.0000.0000.001
AAPAM300.0000.0000.001
AAPAM400.0000.0010.001
AAPAM700.0000.0000.001
AARDF0.0000.0010.000
AARandic000
AATopo0.0000.0010.001
AATopoChg000
AAWHIM0.0000.0000.001
AAWalk0.0010.0000.001
AAindex0.0000.0000.001
OptAA3d000
acc0.0030.0030.006
calcDrugFPSim0.0000.0000.001
calcDrugMCSSim0.0070.0020.009
calcParProtGOSim000
calcParProtSeqSim0.0020.0010.003
calcTwoProtGOSim000
calcTwoProtSeqSim0.0000.0010.001
checkProt0.0010.0000.001
convMolFormat000
extractDrugAIO0.0010.0010.002
extractDrugALOGP000
extractDrugAminoAcidCount0.0000.0010.001
extractDrugApol000
extractDrugAromaticAtomsCount000
extractDrugAromaticBondsCount000
extractDrugAtomCount0.0010.0000.000
extractDrugAutocorrelationCharge0.0000.0000.001
extractDrugAutocorrelationMass0.0000.0010.000
extractDrugAutocorrelationPolarizability0.0010.0000.000
extractDrugBCUT0.0000.0000.001
extractDrugBPol000
extractDrugBondCount0.0010.0000.000
extractDrugCPSA0.0000.0000.001
extractDrugCarbonTypes000
extractDrugChiChain000
extractDrugChiCluster0.0000.0000.001
extractDrugChiPath000
extractDrugChiPathCluster000
extractDrugDescOB0.0010.0010.003
extractDrugECI0.0010.0000.000
extractDrugEstate0.0000.0000.001
extractDrugEstateComplete000
extractDrugExtended000
extractDrugExtendedComplete0.0000.0010.001
extractDrugFMF000
extractDrugFragmentComplexity0.0010.0000.001
extractDrugGraph0.0000.0010.000
extractDrugGraphComplete000
extractDrugGravitationalIndex0.0000.0000.001
extractDrugHBondAcceptorCount000
extractDrugHBondDonorCount000
extractDrugHybridization0.0010.0000.001
extractDrugHybridizationComplete000
extractDrugHybridizationRatio000
extractDrugIPMolecularLearning0.0010.0000.001
extractDrugKR000
extractDrugKRComplete000
extractDrugKappaShapeIndices0.0010.0000.001
extractDrugKierHallSmarts000
extractDrugLargestChain0.0000.0010.000
extractDrugLargestPiSystem0.0010.0000.001
extractDrugLengthOverBreadth000
extractDrugLongestAliphaticChain000
extractDrugMACCS0.0000.0000.001
extractDrugMACCSComplete000
extractDrugMDE0.0000.0010.000
extractDrugMannholdLogP0.0000.0000.001
extractDrugMomentOfInertia0.0000.0000.001
extractDrugOBFP20.0050.0010.006
extractDrugOBFP30.0020.0010.002
extractDrugOBFP40.0370.0010.039
extractDrugOBMACCS0.0020.0020.003
extractDrugPetitjeanNumber0.0010.0000.000
extractDrugPetitjeanShapeIndex000
extractDrugPubChem0.0000.0000.001
extractDrugPubChemComplete0.0000.0010.000
extractDrugRotatableBondsCount0.0000.0000.001
extractDrugRuleOfFive000
extractDrugShortestPath0.0000.0000.001
extractDrugShortestPathComplete0.0010.0010.000
extractDrugStandard000
extractDrugStandardComplete000
extractDrugTPSA000
extractDrugVABC000
extractDrugVAdjMa000
extractDrugWHIM000
extractDrugWeight0.0010.0000.001
extractDrugWeightedPath000
extractDrugWienerNumbers000
extractDrugXLogP0.0000.0000.001
extractDrugZagrebIndex0.0010.0000.000
extractPCMBLOSUM0.0030.0010.004
extractPCMDescScales0.0040.0010.004
extractPCMFAScales0.0110.0020.013
extractPCMMDSScales0.0040.0010.006
extractPCMPropScales0.0040.0010.004
extractPCMScales0.0050.0010.008
extractProtAAC0.0010.0010.001
extractProtAPAAC0.2580.0060.277
extractProtCTDC0.0010.0000.001
extractProtCTDD0.0010.0010.002
extractProtCTDT0.0020.0000.002
extractProtCTriad0.0290.0030.038
extractProtDC0.0010.0010.003
extractProtGeary0.0410.0030.045
extractProtMoran0.0400.0040.054
extractProtMoreauBroto0.0370.0030.044
extractProtPAAC0.1260.0020.137
extractProtPSSM0.0000.0010.001
extractProtPSSMAcc0.0000.0000.001
extractProtPSSMFeature000
extractProtQSO0.2240.0060.244
extractProtSOCN0.2160.0050.221
extractProtTC0.0120.0420.056
getCPI0.0010.0000.001
getDrug000
getFASTAFromKEGG0.0000.0010.000
getFASTAFromUniProt000
getMolFromCAS000
getMolFromChEMBL0.0010.0000.000
getMolFromDrugBank0.0000.0000.001
getMolFromKEGG000
getMolFromPubChem000
getPDBFromRCSBPDB000
getPPI0.0010.0010.001
getProt000
getSeqFromKEGG000
getSeqFromRCSBPDB000
getSeqFromUniProt000
getSmiFromChEMBL000
getSmiFromDrugBank000
getSmiFromKEGG000
getSmiFromPubChem000
readFASTA000
readMolFromSDF000
readMolFromSmi000
readPDB0.2690.0020.280
searchDrug0.0010.0010.001
segProt0.0000.0010.001