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This page was generated on 2025-03-21 11:44 -0400 (Fri, 21 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" 4777
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" 4545
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4576
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4528
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4458
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1740/2313HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ReUseData 1.7.0  (landing page)
Qian Liu
Snapshot Date: 2025-03-20 13:40 -0400 (Thu, 20 Mar 2025)
git_url: https://git.bioconductor.org/packages/ReUseData
git_branch: devel
git_last_commit: 85fc756
git_last_commit_date: 2024-10-29 11:17:22 -0400 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64... NOT SUPPORTED ...
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for ReUseData on lconway

To the developers/maintainers of the ReUseData package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ReUseData.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ReUseData
Version: 1.7.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReUseData
StartedAt: 2025-03-20 18:20:41 -0400 (Thu, 20 Mar 2025)
EndedAt: 2025-03-20 18:21:59 -0400 (Thu, 20 Mar 2025)
EllapsedTime: 77.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReUseData
###
##############################################################################
##############################################################################


* checking for file ‘ReUseData/DESCRIPTION’ ... OK
* preparing ‘ReUseData’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ReUseData_data.Rmd’ using rmarkdown
Requirement already satisfied: pip in /Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.19.2/Rcwl/1.23.0/env_Rcwl/lib/python3.11/site-packages (24.0)
Collecting pip
  Using cached pip-25.0.1-py3-none-any.whl.metadata (3.7 kB)
Collecting wheel
  Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
Requirement already satisfied: setuptools in /Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.19.2/Rcwl/1.23.0/env_Rcwl/lib/python3.11/site-packages (65.5.0)
Collecting setuptools
  Using cached setuptools-77.0.3-py3-none-any.whl.metadata (6.6 kB)
Using cached pip-25.0.1-py3-none-any.whl (1.8 MB)
Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
Using cached setuptools-77.0.3-py3-none-any.whl (1.3 MB)
Installing collected packages: wheel, setuptools, pip
  Attempting uninstall: setuptools
    Found existing installation: setuptools 65.5.0
    Uninstalling setuptools-65.5.0:
      Successfully uninstalled setuptools-65.5.0
  Attempting uninstall: pip
    Found existing installation: pip 24.0
    Uninstalling pip-24.0:
      Successfully uninstalled pip-24.0
Successfully installed pip-25.0.1 setuptools-77.0.3 wheel-0.45.1
ERROR: Could not find a version that satisfies the requirement python==3.11 (from versions: none)
ERROR: No matching distribution found for python==3.11

Quitting from ReUseData_data.Rmd:95-97 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Error installing package(s): "'python==3.11'", "'cwltool==3.1.20230719185429'"
---
Backtrace:
    ▆
 1. └─Rcwl::install_cwltool()
 2.   └─basilisk::basiliskStart(env_Rcwl)
 3.     └─basilisk::obtainEnvironmentPath(env)
 4.       └─basilisk::setupBasiliskEnv(...)
 5.         └─reticulate::virtualenv_install(...)
 6.           └─reticulate:::pip_install(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ReUseData_data.Rmd' failed with diagnostics:
Error installing package(s): "'python==3.11'", "'cwltool==3.1.20230719185429'"
--- failed re-building ‘ReUseData_data.Rmd’

--- re-building ‘ReUseData_quickStart.Rmd’ using rmarkdown
Requirement already satisfied: pip in /Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.19.2/Rcwl/1.23.0/env_Rcwl/lib/python3.11/site-packages (24.0)
Collecting pip
  Using cached pip-25.0.1-py3-none-any.whl.metadata (3.7 kB)
Collecting wheel
  Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
Requirement already satisfied: setuptools in /Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.19.2/Rcwl/1.23.0/env_Rcwl/lib/python3.11/site-packages (65.5.0)
Collecting setuptools
  Using cached setuptools-77.0.3-py3-none-any.whl.metadata (6.6 kB)
Using cached pip-25.0.1-py3-none-any.whl (1.8 MB)
Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
Using cached setuptools-77.0.3-py3-none-any.whl (1.3 MB)
Installing collected packages: wheel, setuptools, pip
  Attempting uninstall: setuptools
    Found existing installation: setuptools 65.5.0
    Uninstalling setuptools-65.5.0:
      Successfully uninstalled setuptools-65.5.0
  Attempting uninstall: pip
    Found existing installation: pip 24.0
    Uninstalling pip-24.0:
      Successfully uninstalled pip-24.0
Successfully installed pip-25.0.1 setuptools-77.0.3 wheel-0.45.1
ERROR: Could not find a version that satisfies the requirement python==3.11 (from versions: none)
ERROR: No matching distribution found for python==3.11

Quitting from ReUseData_quickStart.Rmd:74-76 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Error installing package(s): "'python==3.11'", "'cwltool==3.1.20230719185429'"
---
Backtrace:
    ▆
 1. └─Rcwl::install_cwltool()
 2.   └─basilisk::basiliskStart(env_Rcwl)
 3.     └─basilisk::obtainEnvironmentPath(env)
 4.       └─basilisk::setupBasiliskEnv(...)
 5.         └─reticulate::virtualenv_install(...)
 6.           └─reticulate:::pip_install(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ReUseData_quickStart.Rmd' failed with diagnostics:
Error installing package(s): "'python==3.11'", "'cwltool==3.1.20230719185429'"
--- failed re-building ‘ReUseData_quickStart.Rmd’

--- re-building ‘ReUseData_recipe.Rmd’ using rmarkdown
Requirement already satisfied: pip in /Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.19.2/Rcwl/1.23.0/env_Rcwl/lib/python3.11/site-packages (24.0)
Collecting pip
  Using cached pip-25.0.1-py3-none-any.whl.metadata (3.7 kB)
Collecting wheel
  Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
Requirement already satisfied: setuptools in /Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.19.2/Rcwl/1.23.0/env_Rcwl/lib/python3.11/site-packages (65.5.0)
Collecting setuptools
  Using cached setuptools-77.0.3-py3-none-any.whl.metadata (6.6 kB)
Using cached pip-25.0.1-py3-none-any.whl (1.8 MB)
Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
Using cached setuptools-77.0.3-py3-none-any.whl (1.3 MB)
Installing collected packages: wheel, setuptools, pip
  Attempting uninstall: setuptools
    Found existing installation: setuptools 65.5.0
    Uninstalling setuptools-65.5.0:
      Successfully uninstalled setuptools-65.5.0
  Attempting uninstall: pip
    Found existing installation: pip 24.0
    Uninstalling pip-24.0:
      Successfully uninstalled pip-24.0
Successfully installed pip-25.0.1 setuptools-77.0.3 wheel-0.45.1
ERROR: Could not find a version that satisfies the requirement python==3.11 (from versions: none)
ERROR: No matching distribution found for python==3.11

Quitting from ReUseData_recipe.Rmd:166-168 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Error installing package(s): "'python==3.11'", "'cwltool==3.1.20230719185429'"
---
Backtrace:
    ▆
 1. └─Rcwl::install_cwltool()
 2.   └─basilisk::basiliskStart(env_Rcwl)
 3.     └─basilisk::obtainEnvironmentPath(env)
 4.       └─basilisk::setupBasiliskEnv(...)
 5.         └─reticulate::virtualenv_install(...)
 6.           └─reticulate:::pip_install(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ReUseData_recipe.Rmd' failed with diagnostics:
Error installing package(s): "'python==3.11'", "'cwltool==3.1.20230719185429'"
--- failed re-building ‘ReUseData_recipe.Rmd’

SUMMARY: processing the following files failed:
  ‘ReUseData_data.Rmd’ ‘ReUseData_quickStart.Rmd’
  ‘ReUseData_recipe.Rmd’

Error: Vignette re-building failed.
Execution halted