Mustafa Erhan Ozer
| Snapshot Date: 2025-03-18 13:40 -0400 (Tue, 18 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-03-19 11:47 -0400 (Wed, 19 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4742 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4545 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4459 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2113/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2025-03-18 21:51:49 -0400 (Tue, 18 Mar 2025) |
| EndedAt: 2025-03-18 21:53:52 -0400 (Tue, 18 Mar 2025) |
| EllapsedTime: 122.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck’
* using R Under development (unstable) (2025-03-02 r87868)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** this is package ‘SVMDO’ version ‘1.7.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 10250,175,1080,22933,2548,51099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5193,2328,335,4854,6352,2108
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 65080,3920,5595,4705,2696,50506
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6521,64900,1859,5741,4654,3920
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84833,6009,3638,1376,4547,6199
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4790,160287,85446,6261,5175,999
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1601,2992,2335,1376,26354,694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81033,538,5506,3416,5367,2717
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 477,3710,4724,1182,406922,9971
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1594,3600,2646,7252,1728,79661
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 147007,10841,538,26517,1116,25839
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1346,7412,35,6402,10938,10524
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81704,796,2152,4722,3357,4544
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9409,85479,2170,27232,55768,51117
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2629,4232,51206,686,79736,23175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2475,7289,5970,3082,1514,5962
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 514,25839,7026,5740,4023,570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64240,4552,29843,79053,26517,54968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6582,1468,2115,2161,1950,55283
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10524,37,3952,79736,55863,27089
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 63874,3115,3988,111,811,11093
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9575,7276,1601,6556,5498,2878
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55818,405,64805,3159,27429,3875
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6927,410,3308,3929,23516,9997
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 112817,60684,2572,4552,2159,959
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5972,29928,85446,5228,2581,1149
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116085,686,55863,4728,137682,6616
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9526,55331,3101,6888,5195,51300
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2752,27125,54902,9559,3948,150
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64788,5826,23474,10020,84274,4040
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3759,51608,10379,7275,3082,51649
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 330,85446,5805,6536,4089,79944
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7471,3159,5625,4852,7157,5824
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5236,5261,6338,1281,5250,80339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 177,5019,9779,790,23556,2762
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2784,1489,388753,653,1636,5328
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28976,1339,55503,2638,2875,6261
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26003,940,54704,43,1645,57380
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1369,2762,7480,7409,10229,3304
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3416,4015,6262,5194,2628,8714
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64131,1201,56302,7225,1738,104
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5501,355,24147,84833,4118,4000
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79934,435,4089,3709,1355,5967
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7320,3030,6390,84274,6834,6261
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79158,3358,6236,79731,6515,5789
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2310,1347,53345,64240,7035,9091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 308,9414,205327,4159,2878,55670
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3356,26191,6794,5256,4337,5406
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9575,9054,5971,4846,22845,2169
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 181,3062,407021,8243,8772,5830
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1182,1347,7389,7528,107075310,1718
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2784,6548,2739,2203,31,7248
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 496,83439,3624,27235,197131,23389
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7274,130120,7048,6569,3586,1672
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1582,152078,9927,836,6263,3356
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 156,54552,6938,38,821,134
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23409,1356,549,4357,642489,29928
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1586,367,23417,3082,1270,7471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388585,3122,4524,345,9969,2113
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10094,1802,3293,29078,2762,3606
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8604,10165,5444,538,2303,5096
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6342,54704,1075,121268,23274,10135
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1352,359,788,166785,5702,11019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2260,10229,128486,361,1584,1361
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 486,387787,291,55768,25821,54658
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6550,6401,4695,8877,728294,1200
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3284,4598,7412,120227,84902,5184
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5288,83693,56923,407011,11222,4312
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57505,55270,406934,23590,56999,6748
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2760,10857,11222,338328,8648,1636
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1471,100131801,6340,4256,105372280,1906
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4712,51422,2820,2592,64788,4125
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8842,9698,83439,2647,1595,8803
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2697,3290,6403,7386,7319,4299
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4312,51083,7471,498,2590,50814
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 134,1737,6492,2950,51081,2113
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3995,6616,6535,5276,92935,6678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4669,463,55186,27429,4720,178
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4694,640,2517,169026,9572,8714
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3113,26503,9414,5331,4552,83693
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79001,358,7407,4069,728,8743
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5445,3948,53905,55503,10935,514
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1409,3651,148738,344905,27125,7124
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4973,200810,5190,590,84889,445
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6576,2266,6352,2108,567,2030
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51300,4694,10999,10667,3557,1071
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 114548,406913,56302,10383,145264,3507
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2582,93587,2115,5176,4023,84334
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6448,200810,5095,4049,5837,79661
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3939,7480,151,6565,9056,3596
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 348,7078,125170,629,1594,2309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4149,7057,7320,3030,239,54476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6934,2147,10059,885,1468,7390
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9382,2798,29926,2746,54549,54915
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 796,2693,265,56919,836,5727
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3717,2159,2890,3479,3624,53345
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5730,643181,6535,3920,2328,186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1361,1594,56945,51116,26060,5745
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1956,4153,5601,325,1312,123
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 685,5192,3767,3638,23369,3250
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4314,284184,268,55532,84706,5551
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2591,1606,27010,2006,326625,4035
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10643,2113,2647,129787,10383,1489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3174,4233,5563,7295,440138,9927
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 867,999,51548,57620,3783,55024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10383,2729,4915,5588,9382,5053
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1524,3304,1072,6821,486,7840
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5230,285,6678,57818,374291,6566
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27329,4843,1468,1029,9512,2559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100130015,10269,1361,3673,3795,1801
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54106,1282,8604,55750,6715,5243
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54704,1815,55699,51099,6720,51085
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2303,388372,387,54210,4967,55902
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2992,2593,6342,4697,7100,84317
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9409,3931,5860,491,796,80222
--> return NULL...
2025-03-18 21:53:48.367 R[99074:755189985] XType: Using static font registry.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
31.453 0.410 32.361
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.321 | 0.011 | 3.046 | |