Johannes Rainer
| Snapshot Date: 2026-05-05 13:45 -0400 (Tue, 05 May 2026) |
| git_url: https://git.bioconductor.org/packages/SpectriPy |
| git_branch: devel |
| git_last_commit: c61370b |
| git_last_commit_date: 2026-04-28 09:05:10 -0400 (Tue, 28 Apr 2026) |
| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-06 11:34 -0400 (Wed, 06 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4878 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4663 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2095/2366 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SpectriPy 1.3.0 (landing page) Johannes Rainer
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
| See other builds for SpectriPy in R Universe. | ||||||||||||||
|
To the developers/maintainers of the SpectriPy package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpectriPy.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: SpectriPy |
| Version: 1.3.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data SpectriPy |
| StartedAt: 2026-05-05 06:13:01 -0000 (Tue, 05 May 2026) |
| EndedAt: 2026-05-05 06:14:50 -0000 (Tue, 05 May 2026) |
| EllapsedTime: 109.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data SpectriPy
###
##############################################################################
##############################################################################
* checking for file ‘SpectriPy/DESCRIPTION’ ... OK
* preparing ‘SpectriPy’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SpectriPy.qmd’ using html
[31m
processing file: SpectriPy.qmd
[39m1/109
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4/109 [libraries]
5/109
6/109 [unnamed-chunk-2]
[31mError: require("MsDataHub") is not TRUE
[39m[31m
Quitting from SpectriPy.qmd:137-139 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! require("MsDataHub") is not TRUE
---
Backtrace:
▆
1. └─base::stopifnot(require("MsDataHub"))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[39m[31mExecution halted
[39mError: processing vignette 'SpectriPy.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error in `quarto_render()`:
✖ Error returned by quarto CLI.
-----------------------------
processing file: SpectriPy.qmd
1/109
2/109 [unnamed-chunk-1]
3/109
4/109 [libraries]
5/109
6/109 [unnamed-chunk-2]
[31mError: require("MsDataHub") is not TRUE[39m
Quitting from SpectriPy.qmd:137-139 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! require("MsDataHub") is not TRUE
---
Backtrace:
▆
1. └─base::stopifnot(require("MsDataHub"))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[31mExecution halted[39m
Caused by error:
! System command 'quarto' failed
--- failed re-building ‘SpectriPy.qmd’
--- re-building ‘detailed-installation-configuration.qmd’ using html
[31m
processing file: detailed-installation-configuration.qmd
[39m1/13
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[31moutput file: detailed-installation-configuration.knit.md
[39m[1mpandoc [22m
to: html
output-file: detailed-installation-configuration.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
/home/biocbuild/R/R-4.5.0/site-library/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
[1mmetadata[22m
document-css: false
lang: en
minimal: true
theme: none
title: Detailed information on installation and configuration
package: SpectriPy
vignette: |
%\VignetteIndexEntry{Detailed information on installation and configuration} %\VignetteKeywords{Mass Spectrometry, MS, MSMS, Metabolomics, Infrastructure, Quantitative} %\VignettePackage{SpectriPy} %\VignetteEncoding{UTF-8} %\VignetteEngine{quarto::html} %\VignetteDepends{BiocStyle,SpectriPy,reticulate}
Output created: detailed-installation-configuration.html
--- finished re-building ‘detailed-installation-configuration.qmd’
SUMMARY: processing the following file failed:
‘SpectriPy.qmd’
Error: Vignette re-building failed.
Execution halted