Multiple platform build/check report for BioC 3.21 - BUILD results for TOP on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences"	4537
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"	4543
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4576
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4528
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4459
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for TOP on kjohnson3

To the developers/maintainers of the TOP package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TOP.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: TOP

Version: 1.7.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data TOP

StartedAt: 2025-03-17 17:53:54 -0400 (Mon, 17 Mar 2025)

EndedAt: 2025-03-17 17:54:25 -0400 (Mon, 17 Mar 2025)

EllapsedTime: 31.4 seconds

RetCode: 0

Status: OK

PackageFile: TOP_1.7.0.tar.gz

PackageFileSize: 485.1 KiB

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data TOP
###
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* checking for file ‘TOP/DESCRIPTION’ ... OK
* preparing ‘TOP’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
  NB: this package now depends on R (>= 3.5.0)
  WARNING: Added dependency on R >= 3.5.0 because serialized objects in
  serialize/load version 3 cannot be read in older versions of R.
  File(s) containing such objects:
    ‘TOP/data/TOP_data_binary.RData’
  NB: this package now depends on R (>= 4.1.0)
  WARNING: Added dependency on R >= 4.1.0 because package code uses the
  pipe |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘Performance.R’ ‘PreProcess_TOP.R’ ‘Surv_Frank_CI.Rd’ ‘TOP_model.R’
    ‘TOP_survival.R’ ‘TOP_survival.Rd’ ‘TOP_survivalPrediction.Rd’
    ‘Utils.R’
* building ‘TOP_1.7.0.tar.gz’