Multiple platform build/check report for BioC 3.23 - BUILD results for TSAR on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences"	4875
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences"	4583
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BUILD results for TSAR on nebbiolo1

To the developers/maintainers of the TSAR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TSAR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: TSAR

Version: 1.9.2

Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TSAR

StartedAt: 2025-12-15 20:25:40 -0500 (Mon, 15 Dec 2025)

EndedAt: 2025-12-15 20:26:05 -0500 (Mon, 15 Dec 2025)

EllapsedTime: 25.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TSAR
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* checking for file ‘TSAR/DESCRIPTION’ ... OK
* preparing ‘TSAR’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘FAQ_assistance.Rmd’ using rmarkdown
--- finished re-building ‘FAQ_assistance.Rmd’

--- re-building ‘TSAR_Package_Structure.Rmd’ using rmarkdown

Quitting from TSAR_Package_Structure.Rmd:331-338 [unnamed-chunk-16]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `TSA_average()`:
! Expected column 'RFU' not found. Run normalize_fluorescence() first or set y='Fluorescence'.
---
Backtrace:
    ▆
 1. └─TSAR::TSA_compare_plot(conclusion, y = "RFU", control_condition = control_ID)
 2.   └─TSAR::TSA_average(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'TSAR_Package_Structure.Rmd' failed with diagnostics:
Expected column 'RFU' not found. Run normalize_fluorescence() first or set y='Fluorescence'.
--- failed re-building ‘TSAR_Package_Structure.Rmd’

--- re-building ‘TSAR_Workflow_by_Command.Rmd’ using rmarkdown

Quitting from TSAR_Workflow_by_Command.Rmd:99-104 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `model_beta()`:
! could not find function "model_beta"
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'TSAR_Workflow_by_Command.Rmd' failed with diagnostics:
could not find function "model_beta"
--- failed re-building ‘TSAR_Workflow_by_Command.Rmd’

--- re-building ‘TSAR_Workflow_by_Shiny.Rmd’ using rmarkdown
--- finished re-building ‘TSAR_Workflow_by_Shiny.Rmd’

SUMMARY: processing the following files failed:
  ‘TSAR_Package_Structure.Rmd’ ‘TSAR_Workflow_by_Command.Rmd’

Error: Vignette re-building failed.
Execution halted