BUILD results for VplotR on nebbiolo1
To the developers/maintainers of the VplotR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/VplotR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
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raw results
Summary
Command output
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data VplotR
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* checking for file ‘VplotR/DESCRIPTION’ ... OK
* preparing ‘VplotR’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘VplotR.Rmd’ using rmarkdown
Quitting from VplotR.Rmd:166-191 [unnamed-chunk-9]
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<error/rlang_error>
Error in `do.call()`:
! replacement has length zero
---
Backtrace:
▆
1. ├─VplotR::plotVmat(list_params, cores = 1, nrow = 2, ncol = 5)
2. └─VplotR:::plotVmat.list(list_params, cores = 1, nrow = 2, ncol = 5)
3. └─parallel::mclapply(...)
4. └─base::lapply(X = X, FUN = FUN, ...)
5. └─VplotR (local) FUN(X[[i]], ...)
6. ├─VplotR::plotVmat(...)
7. └─VplotR:::plotVmat.GRanges(...)
8. └─VplotR::computeVmat(...)
9. ├─methods (local) `[<-`(`*tmp*`, filt, value = `<GRanges>`)
10. └─S4Vectors (local) `[<-`(`*tmp*`, filt, value = `<GRanges>`)
11. ├─methods::callNextMethod(x, i, value = value)
12. │ └─base::eval(call, callEnv)
13. │ └─base::eval(call, callEnv)
14. └─S4Vectors (local) .nextMethod(x, i, value = value)
15. ├─S4Vectors::mergeROWS(x, i, value)
16. └─S4Vectors::mergeROWS(x, i, value)
17. ├─S4Vectors::replaceROWS(x, nsbs, value)
18. └─GenomicRanges (local) replaceROWS(x, nsbs, value)
19. ├─S4Vectors::replaceROWS(...)
20. └─S4Vectors::replaceROWS(...)
21. └─S4Vectors:::.subassign_columns(x, nsbs, value)
22. ├─BiocGenerics::lapply(...)
23. └─base::lapply(...)
24. └─S4Vectors (local) FUN(X[[i]], ...)
25. ├─S4Vectors (local) FUN(x[[j]], nsbs, value[[((j - 1L)%%value_ncol) + 1L]])
26. └─S4Vectors (local) FUN(x[[j]], nsbs, value[[((j - 1L)%%value_ncol) + 1L]])
27. ├─S4Vectors::mergeROWS(x, i, value)
28. └─S4Vectors::mergeROWS(x, i, value)
29. ├─BiocGenerics::do.call(`[<-`, args)
30. └─base::do.call(`[<-`, args)
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Error: processing vignette 'VplotR.Rmd' failed with diagnostics:
replacement has length zero
--- failed re-building ‘VplotR.Rmd’
SUMMARY: processing the following file failed:
‘VplotR.Rmd’
Error: Vignette re-building failed.
Execution halted
