Aaron Lun
| Snapshot Date: 2025-03-18 13:40 -0400 (Tue, 18 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/basilisk |
| git_branch: devel |
| git_last_commit: d962fd4 |
| git_last_commit_date: 2025-02-11 15:32:51 -0400 (Tue, 11 Feb 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-03-19 11:43 -0400 (Wed, 19 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4742 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4545 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4459 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 139/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| basilisk 1.19.1 (landing page) Aaron Lun
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the basilisk package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/basilisk.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: basilisk |
| Version: 1.19.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:basilisk.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings basilisk_1.19.1.tar.gz |
| StartedAt: 2025-03-18 19:17:40 -0400 (Tue, 18 Mar 2025) |
| EndedAt: 2025-03-18 19:41:13 -0400 (Tue, 18 Mar 2025) |
| EllapsedTime: 1413.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: basilisk.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:basilisk.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings basilisk_1.19.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck’
* using R Under development (unstable) (2025-03-02 r87868)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘basilisk/DESCRIPTION’ ... OK
* this is package ‘basilisk’ version ‘1.19.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
inst/example/.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘basilisk’ can be installed ... NOTE
Found the following notes/warnings:
Non-staged installation was used
See ‘/Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
basiliskStart.Rd: activateEnvironment, getExternalDir
listPackages.Rd: installConda
useBasiliskEnv.Rd: activateEnvironment
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
basiliskStart 80.785 36.641 157.697
createLocalBasiliskEnv 24.295 16.419 57.857
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/00check.log’
for details.
basilisk.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL basilisk ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘basilisk’ ... ** this is package ‘basilisk’ version ‘1.19.1’ ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (basilisk)
basilisk.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(basilisk)
Loading required package: reticulate
> if (.Platform$OS.type != "windows") test_check("basilisk")
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2025.1.31-h8857fd0_0
libexpat conda-forge/osx-64::libexpat-2.6.4-h240833e_0
libffi conda-forge/osx-64::libffi-3.4.6-h281671d_0
liblzma conda-forge/osx-64::liblzma-5.6.4-hd471939_0
libsqlite conda-forge/osx-64::libsqlite-3.49.1-hdb6dae5_2
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-h0622a9a_3
openssl conda-forge/osx-64::openssl-3.4.1-hc426f3f_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/osx-64::python-3.12.8-h9ccd52b_1_cpython
readline conda-forge/osx-64::readline-8.2-h7cca4af_2
setuptools conda-forge/noarch::setuptools-75.8.2-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2025a-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=2.2.3
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2024.1
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-64::libblas-3.9.0-31_h7f60823_openblas
libcblas conda-forge/osx-64::libcblas-3.9.0-31_hff6cab4_openblas
libcxx conda-forge/osx-64::libcxx-19.1.7-hf95d169_0
libgfortran conda-forge/osx-64::libgfortran-5.0.0-13_2_0_h97931a8_3
libgfortran5 conda-forge/osx-64::libgfortran5-13.2.0-h2873a65_3
liblapack conda-forge/osx-64::liblapack-3.9.0-31_h236ab99_openblas
libopenblas conda-forge/osx-64::libopenblas-0.3.29-openmp_hbf64a52_0
llvm-openmp conda-forge/osx-64::llvm-openmp-19.1.7-ha54dae1_0
numpy conda-forge/osx-64::numpy-2.2.4-py312h6693b03_0
pandas conda-forge/osx-64::pandas-2.2.3-py312h98e817e_1
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python-tzdata conda-forge/noarch::python-tzdata-2025.1-pyhd8ed1ab_0
python_abi conda-forge/osx-64::python_abi-3.12-5_cp312
pytz conda-forge/noarch::pytz-2024.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: - done
Verifying transaction: | / - \ | done
Executing transaction: - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2025.1.31-h8857fd0_0
libexpat conda-forge/osx-64::libexpat-2.6.4-h240833e_0
libffi conda-forge/osx-64::libffi-3.4.6-h281671d_0
liblzma conda-forge/osx-64::liblzma-5.6.4-hd471939_0
libsqlite conda-forge/osx-64::libsqlite-3.49.1-hdb6dae5_2
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-h0622a9a_3
openssl conda-forge/osx-64::openssl-3.4.1-hc426f3f_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/osx-64::python-3.12.8-h9ccd52b_1_cpython
readline conda-forge/osx-64::readline-8.2-h7cca4af_2
setuptools conda-forge/noarch::setuptools-75.8.2-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2025a-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=2.2.2
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2023.4
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-64::libblas-3.9.0-31_h7f60823_openblas
libcblas conda-forge/osx-64::libcblas-3.9.0-31_hff6cab4_openblas
libcxx conda-forge/osx-64::libcxx-19.1.7-hf95d169_0
libgfortran conda-forge/osx-64::libgfortran-5.0.0-13_2_0_h97931a8_3
libgfortran5 conda-forge/osx-64::libgfortran5-13.2.0-h2873a65_3
liblapack conda-forge/osx-64::liblapack-3.9.0-31_h236ab99_openblas
libopenblas conda-forge/osx-64::libopenblas-0.3.29-openmp_hbf64a52_0
llvm-openmp conda-forge/osx-64::llvm-openmp-19.1.7-ha54dae1_0
numpy conda-forge/osx-64::numpy-2.2.4-py312h6693b03_0
pandas conda-forge/osx-64::pandas-2.2.2-py312h1171441_1
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python-tzdata conda-forge/noarch::python-tzdata-2025.1-pyhd8ed1ab_0
python_abi conda-forge/osx-64::python_abi-3.12-5_cp312
pytz conda-forge/noarch::pytz-2023.4-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: - \ done
Verifying transaction: / - \ | / - done
Executing transaction: | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=2.7
The following NEW packages will be INSTALLED:
ca-certificates conda-forge/osx-64::ca-certificates-2025.1.31-h8857fd0_0
certifi conda-forge/osx-64::certifi-2019.11.28-py27h8c360ce_1
libcxx conda-forge/osx-64::libcxx-19.1.7-hf95d169_0
libffi conda-forge/osx-64::libffi-3.2.1-hb1e8313_1007
libsqlite conda-forge/osx-64::libsqlite-3.46.0-h1b8f9f3_0
libzlib conda-forge/osx-64::libzlib-1.2.13-h87427d6_6
ncurses conda-forge/osx-64::ncurses-6.5-h0622a9a_3
openssl conda-forge/osx-64::openssl-1.1.1w-h8a1eda9_0
pip conda-forge/noarch::pip-20.1.1-pyh9f0ad1d_0
python conda-forge/osx-64::python-2.7.15-h8e446fc_1011_cpython
python_abi conda-forge/osx-64::python_abi-2.7-1_cp27m
readline conda-forge/osx-64::readline-8.2-h7cca4af_2
setuptools conda-forge/osx-64::setuptools-44.0.0-py27_0
sqlite conda-forge/osx-64::sqlite-3.46.0-h28673e1_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
zlib conda-forge/osx-64::zlib-1.2.13-h87427d6_6
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2025.1.31-h8857fd0_0
libexpat conda-forge/osx-64::libexpat-2.6.4-h240833e_0
libffi conda-forge/osx-64::libffi-3.4.6-h281671d_0
liblzma conda-forge/osx-64::liblzma-5.6.4-hd471939_0
libsqlite conda-forge/osx-64::libsqlite-3.49.1-hdb6dae5_2
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-h0622a9a_3
openssl conda-forge/osx-64::openssl-3.4.1-hc426f3f_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/osx-64::python-3.12.8-h9ccd52b_1_cpython
readline conda-forge/osx-64::readline-8.2-h7cca4af_2
setuptools conda-forge/noarch::setuptools-75.8.2-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2025a-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2023.4
The following NEW packages will be INSTALLED:
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
pytz conda-forge/noarch::pytz-2023.4-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: - done
Verifying transaction: | / done
Executing transaction: \ | / - \ | / - \ | / - \ | / - \ done
Collecting pandas==2.2.2
Using cached pandas-2.2.2-cp312-cp312-macosx_10_9_x86_64.whl.metadata (19 kB)
Collecting numpy>=1.26.0 (from pandas==2.2.2)
Using cached numpy-2.2.4-cp312-cp312-macosx_10_13_x86_64.whl.metadata (62 kB)
Requirement already satisfied: python-dateutil>=2.8.2 in ./install-test-client/thingo/lib/python3.12/site-packages (from pandas==2.2.2) (2.8.2)
Requirement already satisfied: pytz>=2020.1 in ./install-test-client/thingo/lib/python3.12/site-packages (from pandas==2.2.2) (2023.4)
Collecting tzdata>=2022.7 (from pandas==2.2.2)
Using cached tzdata-2025.1-py2.py3-none-any.whl.metadata (1.4 kB)
Requirement already satisfied: six>=1.5 in ./install-test-client/thingo/lib/python3.12/site-packages (from python-dateutil>=2.8.2->pandas==2.2.2) (1.17.0)
Using cached pandas-2.2.2-cp312-cp312-macosx_10_9_x86_64.whl (12.5 MB)
Using cached numpy-2.2.4-cp312-cp312-macosx_10_13_x86_64.whl (20.9 MB)
Using cached tzdata-2025.1-py2.py3-none-any.whl (346 kB)
Installing collected packages: tzdata, numpy, pandas
Successfully installed numpy-2.2.4 pandas-2.2.2 tzdata-2025.1
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2025.1.31-h8857fd0_0
libexpat conda-forge/osx-64::libexpat-2.6.4-h240833e_0
libffi conda-forge/osx-64::libffi-3.4.6-h281671d_0
liblzma conda-forge/osx-64::liblzma-5.6.4-hd471939_0
libsqlite conda-forge/osx-64::libsqlite-3.49.1-hdb6dae5_2
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-h0622a9a_3
openssl conda-forge/osx-64::openssl-3.4.1-hc426f3f_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/osx-64::python-3.12.8-h9ccd52b_1_cpython
readline conda-forge/osx-64::readline-8.2-h7cca4af_2
setuptools conda-forge/noarch::setuptools-75.8.2-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2025a-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Processing /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/basilisk/example/inst/test_dummy
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Building wheels for collected packages: test_dummy
Building wheel for test_dummy (setup.py): started
Building wheel for test_dummy (setup.py): finished with status 'done'
Created wheel for test_dummy: filename=test_dummy-0.1-py3-none-any.whl size=1310 sha256=bc0937300c1d98426491412a17baf0c5255b4d6325257795915943b5a9b64a57
Stored in directory: /private/tmp/pip-ephem-wheel-cache-0l7gvito/wheels/86/b2/c4/5767c45b04c9771c703581b7e406e45815abc591f667de76a3
Successfully built test_dummy
Installing collected packages: test_dummy
Successfully installed test_dummy-0.1
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2025.1.31-h8857fd0_0
libexpat conda-forge/osx-64::libexpat-2.6.4-h240833e_0
libffi conda-forge/osx-64::libffi-3.4.6-h281671d_0
liblzma conda-forge/osx-64::liblzma-5.6.4-hd471939_0
libsqlite conda-forge/osx-64::libsqlite-3.49.1-hdb6dae5_2
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-h0622a9a_3
openssl conda-forge/osx-64::openssl-3.4.1-hc426f3f_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/osx-64::python-3.12.8-h9ccd52b_1_cpython
readline conda-forge/osx-64::readline-8.2-h7cca4af_2
setuptools conda-forge/noarch::setuptools-75.8.2-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2025a-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed
PackagesNotFoundError: The following packages are not available from current channels:
- whheeeeeeeeeeeeeeeeee=0.0.1*
Current channels:
- https://conda.anaconda.org/conda-forge
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
trying URL 'https://github.com/conda-forge/miniforge/releases/download/24.11.3-0/Miniforge3-24.11.3-0-MacOSX-x86_64.sh'
Content type 'application/octet-stream' length 51504489 bytes (49.1 MB)
==================================================
downloaded 49.1 MB
PREFIX=/tmp/Rtmp9kGQC7/file149d85eed4cb7/1.19.1/0
Unpacking payload ...
Extracting bzip2-1.0.8-hfdf4475_7.conda
Extracting c-ares-1.34.4-hf13058a_0.conda
Extracting ca-certificates-2024.12.14-h8857fd0_0.conda
Extracting libcxx-19.1.7-hf95d169_0.conda
Extracting libev-4.33-h10d778d_2.conda
Extracting libexpat-2.6.4-h240833e_0.conda
Extracting libffi-3.4.2-h0d85af4_5.tar.bz2
Extracting libiconv-1.17-hd75f5a5_2.conda
Extracting liblzma-5.6.3-hd471939_1.conda
Extracting libzlib-1.3.1-hd23fc13_2.conda
Extracting lzo-2.10-h10d778d_1001.conda
Extracting ncurses-6.5-h0622a9a_2.conda
Extracting pybind11-abi-4-hd8ed1ab_3.tar.bz2
Extracting python_abi-3.12-5_cp312.conda
Extracting reproc-14.2.5.post0-h6e16a3a_0.conda
Extracting tzdata-2025a-h78e105d_0.conda
Extracting fmt-11.0.2-h3c5361c_0.conda
Extracting libedit-3.1.20240808-pl5321ha958ccf_0.conda
Extracting libsolv-0.7.30-h69d5d9b_0.conda
Extracting libsqlite-3.48.0-hdb6dae5_0.conda
Extracting libxml2-2.13.5-he8ee3e7_1.conda
Extracting lz4-c-1.10.0-h240833e_1.conda
Extracting openssl-3.4.0-hc426f3f_1.conda
Extracting readline-8.2-h9e318b2_1.conda
Extracting reproc-cpp-14.2.5.post0-h240833e_0.conda
Extracting tk-8.6.13-h1abcd95_1.conda
Extracting yaml-cpp-0.8.0-he965462_0.conda
Extracting zstd-1.5.6-h915ae27_0.conda
Extracting krb5-1.21.3-h37d8d59_0.conda
Extracting libarchive-3.7.7-h1a33361_3.conda
Extracting libnghttp2-1.64.0-hc7306c3_0.conda
Extracting libssh2-1.11.1-h3dc7d44_0.conda
Extracting python-3.12.8-h9ccd52b_1_cpython.conda
Extracting libcurl-8.11.1-h5dec5d8_0.conda
Extracting menuinst-2.2.0-py312hb401068_0.conda
Extracting archspec-0.2.5-pyhd8ed1ab_0.conda
Extracting boltons-24.0.0-pyhd8ed1ab_1.conda
Extracting brotli-python-1.1.0-py312h5861a67_2.conda
Extracting certifi-2024.12.14-pyhd8ed1ab_0.conda
Extracting charset-normalizer-3.4.1-pyhd8ed1ab_0.conda
Extracting colorama-0.4.6-pyhd8ed1ab_1.conda
Extracting distro-1.9.0-pyhd8ed1ab_1.conda
Extracting frozendict-2.4.6-py312h3d0f464_0.conda
Extracting hpack-4.0.0-pyhd8ed1ab_1.conda
Extracting hyperframe-6.0.1-pyhd8ed1ab_1.conda
Extracting idna-3.10-pyhd8ed1ab_1.conda
Extracting jsonpointer-3.0.0-py312hb401068_1.conda
Extracting libmamba-1.5.12-h415aaf8_0.conda
Extracting packaging-24.2-pyhd8ed1ab_2.conda
Extracting platformdirs-4.3.6-pyhd8ed1ab_1.conda
Extracting pluggy-1.5.0-pyhd8ed1ab_1.conda
Extracting pycosat-0.6.6-py312h01d7ebd_2.conda
Extracting pycparser-2.22-pyh29332c3_1.conda
Extracting pysocks-1.7.1-pyha55dd90_7.conda
Extracting ruamel.yaml.clib-0.2.8-py312h3d0f464_1.conda
Extracting setuptools-75.8.0-pyhff2d567_0.conda
Extracting truststore-0.10.0-pyhd8ed1ab_0.conda
Extracting wheel-0.45.1-pyhd8ed1ab_1.conda
Extracting cffi-1.17.1-py312hf857d28_0.conda
Extracting h2-4.1.0-pyhd8ed1ab_1.conda
Extracting jsonpatch-1.33-pyhd8ed1ab_1.conda
Extracting libmambapy-1.5.12-py312h4e4b3da_0.conda
Extracting pip-24.3.1-pyh8b19718_2.conda
Extracting ruamel.yaml-0.18.10-py312h01d7ebd_0.conda
Extracting tqdm-4.67.1-pyhd8ed1ab_1.conda
Extracting zstandard-0.23.0-py312h7122b0e_1.conda
Extracting conda-package-streaming-0.11.0-pyhd8ed1ab_0.conda
Extracting urllib3-2.3.0-pyhd8ed1ab_0.conda
Extracting requests-2.32.3-pyhd8ed1ab_1.conda
Extracting conda-package-handling-2.4.0-pyh7900ff3_2.conda
Extracting conda-libmamba-solver-24.9.0-pyhd8ed1ab_0.conda
Extracting conda-24.11.3-py312hb401068_0.conda
Extracting mamba-1.5.12-py312ha12221d_0.conda
Installing base environment...
Transaction
Prefix: /private/tmp/Rtmp9kGQC7/file149d85eed4cb7/1.19.1/0
Updating specs:
- conda-forge/osx-64::bzip2==1.0.8=hfdf4475_7[md5=7ed4301d437b59045be7e051a0308211]
- conda-forge/osx-64::c-ares==1.34.4=hf13058a_0[md5=133255af67aaf1e0c0468cc753fd800b]
- conda-forge/osx-64::ca-certificates==2024.12.14=h8857fd0_0[md5=b7b887091c99ed2e74845e75e9128410]
- conda-forge/osx-64::libcxx==19.1.7=hf95d169_0[md5=4b8f8dc448d814169dbc58fc7286057d]
- conda-forge/osx-64::libev==4.33=h10d778d_2[md5=899db79329439820b7e8f8de41bca902]
- conda-forge/osx-64::libexpat==2.6.4=h240833e_0[md5=20307f4049a735a78a29073be1be2626]
- conda-forge/osx-64::libffi==3.4.2=h0d85af4_5[md5=ccb34fb14960ad8b125962d3d79b31a9]
- conda-forge/osx-64::libiconv==1.17=hd75f5a5_2[md5=6c3628d047e151efba7cf08c5e54d1ca]
- conda-forge/osx-64::liblzma==5.6.3=hd471939_1[md5=f9e9205fed9c664421c1c09f0b90ce6d]
- conda-forge/osx-64::libzlib==1.3.1=hd23fc13_2[md5=003a54a4e32b02f7355b50a837e699da]
- conda-forge/osx-64::lzo==2.10=h10d778d_1001[md5=bfecd73e4a2dc18ffd5288acf8a212ab]
- conda-forge/osx-64::ncurses==6.5=h0622a9a_2[md5=7eb0c4be5e4287a3d6bfef015669a545]
- conda-forge/noarch::pybind11-abi==4=hd8ed1ab_3[md5=878f923dd6acc8aeb47a75da6c4098be]
- conda-forge/osx-64::python_abi==3.12=5_cp312[md5=c34dd4920e0addf7cfcc725809f25d8e]
- conda-forge/osx-64::reproc==14.2.5.post0=h6e16a3a_0[md5=eda18d4a7dce3831016086a482965345]
- conda-forge/noarch::tzdata==2025a=h78e105d_0[md5=dbcace4706afdfb7eb891f7b37d07c04]
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- conda-forge/osx-64::libxml2==2.13.5=he8ee3e7_1[md5=9379f216f9132d0d3cdeeb10af165262]
- conda-forge/osx-64::lz4-c==1.10.0=h240833e_1[md5=d6b9bd7e356abd7e3a633d59b753495a]
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- conda-forge/osx-64::readline==8.2=h9e318b2_1[md5=f17f77f2acf4d344734bda76829ce14e]
- conda-forge/osx-64::reproc-cpp==14.2.5.post0=h240833e_0[md5=420229341978751bd96faeced92c200e]
- conda-forge/osx-64::tk==8.6.13=h1abcd95_1[md5=bf830ba5afc507c6232d4ef0fb1a882d]
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- conda-forge/osx-64::krb5==1.21.3=h37d8d59_0[md5=d4765c524b1d91567886bde656fb514b]
- conda-forge/osx-64::libarchive==3.7.7=h1a33361_3[md5=5cc55f063de099a537a56c4db2e8d58d]
- conda-forge/osx-64::libnghttp2==1.64.0=hc7306c3_0[md5=ab21007194b97beade22ceb7a3f6fee5]
- conda-forge/osx-64::libssh2==1.11.1=h3dc7d44_0[md5=b1caec4561059e43a5d056684c5a2de0]
- conda-forge/osx-64::python==3.12.8=h9ccd52b_1_cpython[md5=68a31f9cfbdcab2a4baec79095374780]
- conda-forge/osx-64::libcurl==8.11.1=h5dec5d8_0[md5=2f80e92674f4a92e9f8401494496ee62]
- conda-forge/osx-64::menuinst==2.2.0=py312hb401068_0[md5=4b908217561a1274f48b0f9952fb5359]
- conda-forge/noarch::archspec==0.2.5=pyhd8ed1ab_0[md5=845b38297fca2f2d18a29748e2ece7fa]
- conda-forge/noarch::boltons==24.0.0=pyhd8ed1ab_1[md5=d88c38e66d85ecc9c7e2c4110676bbf4]
- conda-forge/osx-64::brotli-python==1.1.0=py312h5861a67_2[md5=b95025822e43128835826ec0cc45a551]
- conda-forge/noarch::certifi==2024.12.14=pyhd8ed1ab_0[md5=6feb87357ecd66733be3279f16a8c400]
- conda-forge/noarch::charset-normalizer==3.4.1=pyhd8ed1ab_0[md5=e83a31202d1c0a000fce3e9cf3825875]
- conda-forge/noarch::colorama==0.4.6=pyhd8ed1ab_1[md5=962b9857ee8e7018c22f2776ffa0b2d7]
- conda-forge/noarch::distro==1.9.0=pyhd8ed1ab_1[md5=0a2014fd9860f8b1eaa0b1f3d3771a08]
- conda-forge/osx-64::frozendict==2.4.6=py312h3d0f464_0[md5=58a8d9e016adc22964bfb0b9a5272e16]
- conda-forge/noarch::hpack==4.0.0=pyhd8ed1ab_1[md5=2aa5ff7fa34a81b9196532c84c10d865]
- conda-forge/noarch::hyperframe==6.0.1=pyhd8ed1ab_1[md5=566e75c90c1d0c8c459eb0ad9833dc7a]
- conda-forge/noarch::idna==3.10=pyhd8ed1ab_1[md5=39a4f67be3286c86d696df570b1201b7]
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- conda-forge/osx-64::libmamba==1.5.12=h415aaf8_0[md5=4d0ba50ef9b7a0702b5e7d13b139de24]
- conda-forge/noarch::packaging==24.2=pyhd8ed1ab_2[md5=3bfed7e6228ebf2f7b9eaa47f1b4e2aa]
- conda-forge/noarch::platformdirs==4.3.6=pyhd8ed1ab_1[md5=577852c7e53901ddccc7e6a9959ddebe]
- conda-forge/noarch::pluggy==1.5.0=pyhd8ed1ab_1[md5=e9dcbce5f45f9ee500e728ae58b605b6]
- conda-forge/osx-64::pycosat==0.6.6=py312h01d7ebd_2[md5=9addc104aa4afd0b21a086cfdca253d5]
- conda-forge/noarch::pycparser==2.22=pyh29332c3_1[md5=12c566707c80111f9799308d9e265aef]
- conda-forge/noarch::pysocks==1.7.1=pyha55dd90_7[md5=461219d1a5bd61342293efa2c0c90eac]
- conda-forge/osx-64::ruamel.yaml.clib==0.2.8=py312h3d0f464_1[md5=f4c0464f98dabcd65064e89991c3c9c2]
- conda-forge/noarch::setuptools==75.8.0=pyhff2d567_0[md5=8f28e299c11afdd79e0ec1e279dcdc52]
- conda-forge/noarch::truststore==0.10.0=pyhd8ed1ab_0[md5=ad1c20cd193e3044bcf17798c33b9d67]
- conda-forge/noarch::wheel==0.45.1=pyhd8ed1ab_1[md5=75cb7132eb58d97896e173ef12ac9986]
- conda-forge/osx-64::cffi==1.17.1=py312hf857d28_0[md5=5bbc69b8194fedc2792e451026cac34f]
- conda-forge/noarch::h2==4.1.0=pyhd8ed1ab_1[md5=825927dc7b0f287ef8d4d0011bb113b1]
- conda-forge/noarch::jsonpatch==1.33=pyhd8ed1ab_1[md5=cb60ae9cf02b9fcb8004dec4089e5691]
- conda-forge/osx-64::libmambapy==1.5.12=py312h4e4b3da_0[md5=015a81b7c86e74144fc106be5810aa30]
- conda-forge/noarch::pip==24.3.1=pyh8b19718_2[md5=04e691b9fadd93a8a9fad87a81d4fd8f]
- conda-forge/osx-64::ruamel.yaml==0.18.10=py312h01d7ebd_0[md5=e6fb89d650ea648b6be3bf2fa5026523]
- conda-forge/noarch::tqdm==4.67.1=pyhd8ed1ab_1[md5=9efbfdc37242619130ea42b1cc4ed861]
- conda-forge/osx-64::zstandard==0.23.0=py312h7122b0e_1[md5=bd132ba98f3fc0a6067f355f8efe4cb6]
- conda-forge/noarch::conda-package-streaming==0.11.0=pyhd8ed1ab_0[md5=bc9533d8616a97551ed144789bf9c1cd]
- conda-forge/noarch::urllib3==2.3.0=pyhd8ed1ab_0[md5=32674f8dbfb7b26410ed580dd3c10a29]
- conda-forge/noarch::requests==2.32.3=pyhd8ed1ab_1[md5=a9b9368f3701a417eac9edbcae7cb737]
- conda-forge/noarch::conda-package-handling==2.4.0=pyh7900ff3_2[md5=32c158f481b4fd7630c565030f7bc482]
- conda-forge/noarch::conda-libmamba-solver==24.9.0=pyhd8ed1ab_0[md5=45378d089c5f72c9c0d63d58414c645d]
- conda-forge/osx-64::conda==24.11.3=py312hb401068_0[md5=b19d45d499a4249ef39db67162f4be7b]
- conda-forge/osx-64::mamba==1.5.12=py312ha12221d_0[md5=1020c747a424cbc156284f0620d4234f]
Package Version Build Channel Size
─────────────────────────────────────────────────────────────────────────────────────
Install:
─────────────────────────────────────────────────────────────────────────────────────
+ bzip2 1.0.8 hfdf4475_7 conda-forge
+ c-ares 1.34.4 hf13058a_0 conda-forge
+ ca-certificates 2024.12.14 h8857fd0_0 conda-forge
+ libcxx 19.1.7 hf95d169_0 conda-forge
+ libev 4.33 h10d778d_2 conda-forge
+ libexpat 2.6.4 h240833e_0 conda-forge
+ libffi 3.4.2 h0d85af4_5 conda-forge
+ libiconv 1.17 hd75f5a5_2 conda-forge
+ liblzma 5.6.3 hd471939_1 conda-forge
+ libzlib 1.3.1 hd23fc13_2 conda-forge
+ lzo 2.10 h10d778d_1001 conda-forge
+ ncurses 6.5 h0622a9a_2 conda-forge
+ pybind11-abi 4 hd8ed1ab_3 conda-forge
+ python_abi 3.12 5_cp312 conda-forge
+ reproc 14.2.5.post0 h6e16a3a_0 conda-forge
+ tzdata 2025a h78e105d_0 conda-forge
+ fmt 11.0.2 h3c5361c_0 conda-forge
+ libedit 3.1.20240808 pl5321ha958ccf_0 conda-forge
+ libsolv 0.7.30 h69d5d9b_0 conda-forge
+ libsqlite 3.48.0 hdb6dae5_0 conda-forge
+ libxml2 2.13.5 he8ee3e7_1 conda-forge
+ lz4-c 1.10.0 h240833e_1 conda-forge
+ openssl 3.4.0 hc426f3f_1 conda-forge
+ readline 8.2 h9e318b2_1 conda-forge
+ reproc-cpp 14.2.5.post0 h240833e_0 conda-forge
+ tk 8.6.13 h1abcd95_1 conda-forge
+ yaml-cpp 0.8.0 he965462_0 conda-forge
+ zstd 1.5.6 h915ae27_0 conda-forge
+ krb5 1.21.3 h37d8d59_0 conda-forge
+ libarchive 3.7.7 h1a33361_3 conda-forge
+ libnghttp2 1.64.0 hc7306c3_0 conda-forge
+ libssh2 1.11.1 h3dc7d44_0 conda-forge
+ python 3.12.8 h9ccd52b_1_cpython conda-forge
+ libcurl 8.11.1 h5dec5d8_0 conda-forge
+ menuinst 2.2.0 py312hb401068_0 conda-forge
+ archspec 0.2.5 pyhd8ed1ab_0 conda-forge
+ boltons 24.0.0 pyhd8ed1ab_1 conda-forge
+ brotli-python 1.1.0 py312h5861a67_2 conda-forge
+ certifi 2024.12.14 pyhd8ed1ab_0 conda-forge
+ charset-normalizer 3.4.1 pyhd8ed1ab_0 conda-forge
+ colorama 0.4.6 pyhd8ed1ab_1 conda-forge
+ distro 1.9.0 pyhd8ed1ab_1 conda-forge
+ frozendict 2.4.6 py312h3d0f464_0 conda-forge
+ hpack 4.0.0 pyhd8ed1ab_1 conda-forge
+ hyperframe 6.0.1 pyhd8ed1ab_1 conda-forge
+ idna 3.10 pyhd8ed1ab_1 conda-forge
+ jsonpointer 3.0.0 py312hb401068_1 conda-forge
+ libmamba 1.5.12 h415aaf8_0 conda-forge
+ packaging 24.2 pyhd8ed1ab_2 conda-forge
+ platformdirs 4.3.6 pyhd8ed1ab_1 conda-forge
+ pluggy 1.5.0 pyhd8ed1ab_1 conda-forge
+ pycosat 0.6.6 py312h01d7ebd_2 conda-forge
+ pycparser 2.22 pyh29332c3_1 conda-forge
+ pysocks 1.7.1 pyha55dd90_7 conda-forge
+ ruamel.yaml.clib 0.2.8 py312h3d0f464_1 conda-forge
+ setuptools 75.8.0 pyhff2d567_0 conda-forge
+ truststore 0.10.0 pyhd8ed1ab_0 conda-forge
+ wheel 0.45.1 pyhd8ed1ab_1 conda-forge
+ cffi 1.17.1 py312hf857d28_0 conda-forge
+ h2 4.1.0 pyhd8ed1ab_1 conda-forge
+ jsonpatch 1.33 pyhd8ed1ab_1 conda-forge
+ libmambapy 1.5.12 py312h4e4b3da_0 conda-forge
+ pip 24.3.1 pyh8b19718_2 conda-forge
+ ruamel.yaml 0.18.10 py312h01d7ebd_0 conda-forge
+ tqdm 4.67.1 pyhd8ed1ab_1 conda-forge
+ zstandard 0.23.0 py312h7122b0e_1 conda-forge
+ conda-package-streaming 0.11.0 pyhd8ed1ab_0 conda-forge
+ urllib3 2.3.0 pyhd8ed1ab_0 conda-forge
+ requests 2.32.3 pyhd8ed1ab_1 conda-forge
+ conda-package-handling 2.4.0 pyh7900ff3_2 conda-forge
+ conda-libmamba-solver 24.9.0 pyhd8ed1ab_0 conda-forge
+ conda 24.11.3 py312hb401068_0 conda-forge
+ mamba 1.5.12 py312ha12221d_0 conda-forge
Summary:
Install: 73 packages
Total download: 0 B
─────────────────────────────────────────────────────────────────────────────────────
Transaction starting
Transaction finished
To activate this environment, use:
micromamba activate /private/tmp/Rtmp9kGQC7/file149d85eed4cb7/1.19.1/0
Or to execute a single command in this environment, use:
micromamba run -p /private/tmp/Rtmp9kGQC7/file149d85eed4cb7/1.19.1/0 mycommand
installation finished.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /private/tmp/Rtmp9kGQC7/file149d85eed4cb7/1.19.1/basilisk.utils/1.19.1/test
added / updated specs:
- python=3.12.8
The following packages will be downloaded:
package | build
---------------------------|-----------------
ca-certificates-2025.1.31 | h8857fd0_0 155 KB conda-forge
libffi-3.4.6 | h281671d_0 46 KB conda-forge
liblzma-5.6.4 | hd471939_0 101 KB conda-forge
libsqlite-3.49.1 | hdb6dae5_2 955 KB conda-forge
ncurses-6.5 | h0622a9a_3 803 KB conda-forge
openssl-3.4.1 | hc426f3f_0 2.5 MB conda-forge
pip-25.0.1 | pyh8b19718_0 1.2 MB conda-forge
readline-8.2 | h7cca4af_2 251 KB conda-forge
setuptools-75.8.2 | pyhff2d567_0 760 KB conda-forge
------------------------------------------------------------
Total: 6.7 MB
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2025.1.31-h8857fd0_0
libexpat conda-forge/osx-64::libexpat-2.6.4-h240833e_0
libffi conda-forge/osx-64::libffi-3.4.6-h281671d_0
liblzma conda-forge/osx-64::liblzma-5.6.4-hd471939_0
libsqlite conda-forge/osx-64::libsqlite-3.49.1-hdb6dae5_2
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-h0622a9a_3
openssl conda-forge/osx-64::openssl-3.4.1-hc426f3f_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/osx-64::python-3.12.8-h9ccd52b_1_cpython
readline conda-forge/osx-64::readline-8.2-h7cca4af_2
setuptools conda-forge/noarch::setuptools-75.8.2-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2025a-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /private/tmp/Rtmp9kGQC7/file149d85eed4cb7/1.19.1/basilisk.utils/1.19.1/test
added / updated specs:
- pandas=2.2.3
- python=3.12.8
The following packages will be downloaded:
package | build
---------------------------|-----------------
libblas-3.9.0 |31_h7f60823_openblas 17 KB conda-forge
libcblas-3.9.0 |31_hff6cab4_openblas 17 KB conda-forge
libgfortran-5.0.0 |13_2_0_h97931a8_3 108 KB conda-forge
libgfortran5-13.2.0 | h2873a65_3 1.5 MB conda-forge
liblapack-3.9.0 |31_h236ab99_openblas 17 KB conda-forge
libopenblas-0.3.29 |openmp_hbf64a52_0 5.9 MB conda-forge
llvm-openmp-19.1.7 | ha54dae1_0 298 KB conda-forge
numpy-2.2.4 | py312h6693b03_0 7.2 MB conda-forge
pandas-2.2.3 | py312h98e817e_1 13.9 MB conda-forge
python-dateutil-2.9.0.post0| pyhff2d567_1 217 KB conda-forge
python-tzdata-2025.1 | pyhd8ed1ab_0 140 KB conda-forge
pytz-2024.1 | pyhd8ed1ab_0 184 KB conda-forge
six-1.17.0 | pyhd8ed1ab_0 16 KB conda-forge
------------------------------------------------------------
Total: 29.5 MB
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-64::libblas-3.9.0-31_h7f60823_openblas
libcblas conda-forge/osx-64::libcblas-3.9.0-31_hff6cab4_openblas
libcxx conda-forge/osx-64::libcxx-19.1.7-hf95d169_0
libgfortran conda-forge/osx-64::libgfortran-5.0.0-13_2_0_h97931a8_3
libgfortran5 conda-forge/osx-64::libgfortran5-13.2.0-h2873a65_3
liblapack conda-forge/osx-64::liblapack-3.9.0-31_h236ab99_openblas
libopenblas conda-forge/osx-64::libopenblas-0.3.29-openmp_hbf64a52_0
llvm-openmp conda-forge/osx-64::llvm-openmp-19.1.7-ha54dae1_0
numpy conda-forge/osx-64::numpy-2.2.4-py312h6693b03_0
pandas conda-forge/osx-64::pandas-2.2.3-py312h98e817e_1
python-dateutil conda-forge/noarch::python-dateutil-2.9.0.post0-pyhff2d567_1
python-tzdata conda-forge/noarch::python-tzdata-2025.1-pyhd8ed1ab_0
python_abi conda-forge/osx-64::python_abi-3.12-5_cp312
pytz conda-forge/noarch::pytz-2024.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0
Downloading and Extracting Packages: ...working...
pandas-2.2.3 | 13.9 MB | | 0%
numpy-2.2.4 | 7.2 MB | | 0% [A
libopenblas-0.3.29 | 5.9 MB | | 0% [A[A
libgfortran5-13.2.0 | 1.5 MB | | 0% [A[A[A
llvm-openmp-19.1.7 | 298 KB | | 0% [A[A[A[A
python-dateutil-2.9. | 217 KB | | 0% [A[A[A[A[A
pytz-2024.1 | 184 KB | | 0% [A[A[A[A[A[A
python-tzdata-2025.1 | 140 KB | | 0% [A[A[A[A[A[A[A
libgfortran-5.0.0 | 108 KB | | 0% [A[A[A[A[A[A[A[A
libblas-3.9.0 | 17 KB | | 0% [A[A[A[A[A[A[A[A[A
liblapack-3.9.0 | 17 KB | | 0% [A[A[A[A[A[A[A[A[A[A
libcblas-3.9.0 | 17 KB | | 0% [A[A[A[A[A[A[A[A[A[A[A
six-1.17.0 | 16 KB | | 0% [A[A[A[A[A[A[A[A[A[A[A[A
pandas-2.2.3 | 13.9 MB | 3 | 3%
libopenblas-0.3.29 | 5.9 MB | 2 | 2% [A[A
libgfortran5-13.2.0 | 1.5 MB | ##7 | 27% [A[A[A
llvm-openmp-19.1.7 | 298 KB | ###2 | 32% [A[A[A[A
numpy-2.2.4 | 7.2 MB | | 0% [A
llvm-openmp-19.1.7 | 298 KB | ########## | 100% [A[A[A[A
python-dateutil-2.9. | 217 KB | 7 | 7% [A[A[A[A[A
libgfortran5-13.2.0 | 1.5 MB | ########## | 100% [A[A[A
pandas-2.2.3 | 13.9 MB | ##8 | 28%
libopenblas-0.3.29 | 5.9 MB | ###9 | 40% [A[A
numpy-2.2.4 | 7.2 MB | ##1 | 21% [A
python-dateutil-2.9. | 217 KB | ########## | 100% [A[A[A[A[A
pytz-2024.1 | 184 KB | 8 | 9% [A[A[A[A[A[A
pytz-2024.1 | 184 KB | ########## | 100% [A[A[A[A[A[A
python-tzdata-2025.1 | 140 KB | #1 | 11% [A[A[A[A[A[A[A
python-tzdata-2025.1 | 140 KB | ########## | 100% [A[A[A[A[A[A[A
pandas-2.2.3 | 13.9 MB | ####3 | 44%
libopenblas-0.3.29 | 5.9 MB | #######7 | 78% [A[A
numpy-2.2.4 | 7.2 MB | #####1 | 51% [A
libgfortran-5.0.0 | 108 KB | #4 | 15% [A[A[A[A[A[A[A[A
libgfortran-5.0.0 | 108 KB | ########## | 100% [A[A[A[A[A[A[A[A
llvm-openmp-19.1.7 | 298 KB | ########## | 100% [A[A[A[A
llvm-openmp-19.1.7 | 298 KB | ########## | 100% [A[A[A[A
libblas-3.9.0 | 17 KB | #########5 | 96% [A[A[A[A[A[A[A[A[A
libblas-3.9.0 | 17 KB | ########## | 100% [A[A[A[A[A[A[A[A[A
liblapack-3.9.0 | 17 KB | #########6 | 96% [A[A[A[A[A[A[A[A[A[A
liblapack-3.9.0 | 17 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A
libcblas-3.9.0 | 17 KB | #########6 | 96% [A[A[A[A[A[A[A[A[A[A[A
pandas-2.2.3 | 13.9 MB | #####9 | 60%
numpy-2.2.4 | 7.2 MB | ########5 | 85% [A
libcblas-3.9.0 | 17 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A
six-1.17.0 | 16 KB | #########9 | 100% [A[A[A[A[A[A[A[A[A[A[A[A
six-1.17.0 | 16 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A[A
python-dateutil-2.9. | 217 KB | ########## | 100% [A[A[A[A[A
python-dateutil-2.9. | 217 KB | ########## | 100% [A[A[A[A[A
pandas-2.2.3 | 13.9 MB | ########3 | 84%
libopenblas-0.3.29 | 5.9 MB | ########## | 100% [A[A
libgfortran5-13.2.0 | 1.5 MB | ########## | 100% [A[A[A
libgfortran5-13.2.0 | 1.5 MB | ########## | 100% [A[A[A
numpy-2.2.4 | 7.2 MB | ########## | 100% [A
libgfortran-5.0.0 | 108 KB | ########## | 100% [A[A[A[A[A[A[A[A
libgfortran-5.0.0 | 108 KB | ########## | 100% [A[A[A[A[A[A[A[A
libblas-3.9.0 | 17 KB | ########## | 100% [A[A[A[A[A[A[A[A[A
liblapack-3.9.0 | 17 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A
pandas-2.2.3 | 13.9 MB | ########## | 100%
libcblas-3.9.0 | 17 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A
six-1.17.0 | 16 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A[A
pytz-2024.1 | 184 KB | ########## | 100% [A[A[A[A[A[A
pytz-2024.1 | 184 KB | ########## | 100% [A[A[A[A[A[A
libopenblas-0.3.29 | 5.9 MB | ########## | 100% [A[A
python-tzdata-2025.1 | 140 KB | ########## | 100% [A[A[A[A[A[A[A
python-tzdata-2025.1 | 140 KB | ########## | 100% [A[A[A[A[A[A[A
numpy-2.2.4 | 7.2 MB | ########## | 100% [A
pandas-2.2.3 | 13.9 MB | ########## | 100%
[A
[A[A
[A[A[A
[A[A[A[A
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[A[A[A[A[A[A
[A[A[A[A[A[A[A
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[A[A[A[A[A[A[A[A[A[A[A[A done
Preparing transaction: - \ | done
Verifying transaction: - \ | / - \ | / - \ | / - \ | / done
Executing transaction: \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.19.1
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2025.1.31-h8857fd0_0
libexpat conda-forge/osx-64::libexpat-2.6.4-h240833e_0
libffi conda-forge/osx-64::libffi-3.4.6-h281671d_0
liblzma conda-forge/osx-64::liblzma-5.6.4-hd471939_0
libsqlite conda-forge/osx-64::libsqlite-3.49.1-hdb6dae5_2
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-h0622a9a_3
openssl conda-forge/osx-64::openssl-3.4.1-hc426f3f_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/osx-64::python-3.12.8-h9ccd52b_1_cpython
readline conda-forge/osx-64::readline-8.2-h7cca4af_2
setuptools conda-forge/noarch::setuptools-75.8.2-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2025a-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.19.1
added / updated specs:
- pandas=2.2.3
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2024.1
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-64::libblas-3.9.0-31_h7f60823_openblas
libcblas conda-forge/osx-64::libcblas-3.9.0-31_hff6cab4_openblas
libcxx conda-forge/osx-64::libcxx-19.1.7-hf95d169_0
libgfortran conda-forge/osx-64::libgfortran-5.0.0-13_2_0_h97931a8_3
libgfortran5 conda-forge/osx-64::libgfortran5-13.2.0-h2873a65_3
liblapack conda-forge/osx-64::liblapack-3.9.0-31_h236ab99_openblas
libopenblas conda-forge/osx-64::libopenblas-0.3.29-openmp_hbf64a52_0
llvm-openmp conda-forge/osx-64::llvm-openmp-19.1.7-ha54dae1_0
numpy conda-forge/osx-64::numpy-2.2.4-py312h6693b03_0
pandas conda-forge/osx-64::pandas-2.2.3-py312h98e817e_1
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python-tzdata conda-forge/noarch::python-tzdata-2025.1-pyhd8ed1ab_0
python_abi conda-forge/osx-64::python_abi-3.12-5_cp312
pytz conda-forge/noarch::pytz-2024.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: - \ done
Verifying transaction: / - \ | / - \ | / - \ | / - \ | / - \ | / - done
Executing transaction: | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2025.1.31-h8857fd0_0
libexpat conda-forge/osx-64::libexpat-2.6.4-h240833e_0
libffi conda-forge/osx-64::libffi-3.4.6-h281671d_0
liblzma conda-forge/osx-64::liblzma-5.6.4-hd471939_0
libsqlite conda-forge/osx-64::libsqlite-3.49.1-hdb6dae5_2
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-h0622a9a_3
openssl conda-forge/osx-64::openssl-3.4.1-hc426f3f_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/osx-64::python-3.12.8-h9ccd52b_1_cpython
readline conda-forge/osx-64::readline-8.2-h7cca4af_2
setuptools conda-forge/noarch::setuptools-75.8.2-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2025a-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- pandas=2.2.3
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2024.1
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-64::libblas-3.9.0-31_h7f60823_openblas
libcblas conda-forge/osx-64::libcblas-3.9.0-31_hff6cab4_openblas
libcxx conda-forge/osx-64::libcxx-19.1.7-hf95d169_0
libgfortran conda-forge/osx-64::libgfortran-5.0.0-13_2_0_h97931a8_3
libgfortran5 conda-forge/osx-64::libgfortran5-13.2.0-h2873a65_3
liblapack conda-forge/osx-64::liblapack-3.9.0-31_h236ab99_openblas
libopenblas conda-forge/osx-64::libopenblas-0.3.29-openmp_hbf64a52_0
llvm-openmp conda-forge/osx-64::llvm-openmp-19.1.7-ha54dae1_0
numpy conda-forge/osx-64::numpy-2.2.4-py312h6693b03_0
pandas conda-forge/osx-64::pandas-2.2.3-py312h98e817e_1
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python-tzdata conda-forge/noarch::python-tzdata-2025.1-pyhd8ed1ab_0
python_abi conda-forge/osx-64::python_abi-3.12-5_cp312
pytz conda-forge/noarch::pytz-2024.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: - done
Verifying transaction: | / - \ | / - \ done
Executing transaction: / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2025.1.31-h8857fd0_0
libexpat conda-forge/osx-64::libexpat-2.6.4-h240833e_0
libffi conda-forge/osx-64::libffi-3.4.6-h281671d_0
liblzma conda-forge/osx-64::liblzma-5.6.4-hd471939_0
libsqlite conda-forge/osx-64::libsqlite-3.49.1-hdb6dae5_2
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-h0622a9a_3
openssl conda-forge/osx-64::openssl-3.4.1-hc426f3f_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/osx-64::python-3.12.8-h9ccd52b_1_cpython
readline conda-forge/osx-64::readline-8.2-h7cca4af_2
setuptools conda-forge/noarch::setuptools-75.8.2-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2025a-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- pandas=2.2.2
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2023.4
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-64::libblas-3.9.0-31_h7f60823_openblas
libcblas conda-forge/osx-64::libcblas-3.9.0-31_hff6cab4_openblas
libcxx conda-forge/osx-64::libcxx-19.1.7-hf95d169_0
libgfortran conda-forge/osx-64::libgfortran-5.0.0-13_2_0_h97931a8_3
libgfortran5 conda-forge/osx-64::libgfortran5-13.2.0-h2873a65_3
liblapack conda-forge/osx-64::liblapack-3.9.0-31_h236ab99_openblas
libopenblas conda-forge/osx-64::libopenblas-0.3.29-openmp_hbf64a52_0
llvm-openmp conda-forge/osx-64::llvm-openmp-19.1.7-ha54dae1_0
numpy conda-forge/osx-64::numpy-2.2.4-py312h6693b03_0
pandas conda-forge/osx-64::pandas-2.2.2-py312h1171441_1
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python-tzdata conda-forge/noarch::python-tzdata-2025.1-pyhd8ed1ab_0
python_abi conda-forge/osx-64::python_abi-3.12-5_cp312
pytz conda-forge/noarch::pytz-2023.4-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: - \ done
Verifying transaction: / - \ | / - \ | done
Executing transaction: - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - done
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 63 ]
>
> proc.time()
user system elapsed
410.479 255.591 1089.552
basilisk.Rcheck/basilisk-Ex.timings
| name | user | system | elapsed | |
| BasiliskEnvironment-class | 0.002 | 0.001 | 0.003 | |
| PyPiLink | 0.000 | 0.000 | 0.001 | |
| basiliskOptions | 0.000 | 0.001 | 0.001 | |
| basiliskStart | 80.785 | 36.641 | 157.697 | |
| configureBasiliskEnv | 0.001 | 0.000 | 0.000 | |
| createLocalBasiliskEnv | 24.295 | 16.419 | 57.857 | |
| listPackages | 0.406 | 0.179 | 0.684 | |
| obtainEnvironmentPath | 0.005 | 0.001 | 0.007 | |
| setupBasiliskEnv | 0.003 | 0.001 | 0.005 | |
| useBasiliskEnv | 1.111 | 0.419 | 1.616 | |