Back to Multiple platform build/check report for BioC 3.24:   simplified   long
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This page was generated on 2026-05-06 11:34 -0400 (Wed, 06 May 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4878
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4663
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 491/2366HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cyanoFilter 1.21.0  (landing page)
Oluwafemi Olusoji
Snapshot Date: 2026-05-05 13:45 -0400 (Tue, 05 May 2026)
git_url: https://git.bioconductor.org/packages/cyanoFilter
git_branch: devel
git_last_commit: 68460c0
git_last_commit_date: 2026-04-28 08:55:36 -0400 (Tue, 28 Apr 2026)
nebbiolo2Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  
See other builds for cyanoFilter in R Universe.


CHECK results for cyanoFilter on taishan

To the developers/maintainers of the cyanoFilter package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: cyanoFilter
Version: 1.21.0
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings cyanoFilter_1.21.0.tar.gz
StartedAt: 2026-05-05 09:03:31 -0000 (Tue, 05 May 2026)
EndedAt: 2026-05-05 09:06:58 -0000 (Tue, 05 May 2026)
EllapsedTime: 207.1 seconds
RetCode: 0
Status:   OK  
CheckDir: cyanoFilter.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings cyanoFilter_1.21.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.24-bioc/meat/cyanoFilter.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cyanoFilter/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cyanoFilter’ version ‘1.21.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cyanoFilter’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
gateFunc    11.978  0.762  10.270
ggpairsDens  6.595  0.490   7.102
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

cyanoFilter.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL cyanoFilter
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’
* installing *source* package ‘cyanoFilter’ ...
** this is package ‘cyanoFilter’ version ‘1.21.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cyanoFilter)

Tests output


Example timings

cyanoFilter.Rcheck/cyanoFilter-Ex.timings

nameusersystemelapsed
MarginEvents0.9250.0160.948
PhytoFilter0.7690.0280.805
PhytopFilter0.8380.1040.944
accTest0.4460.0430.493
accuracy0.6210.0040.635
cellmargin0.5830.0680.655
clusterExtract1.0380.0471.096
clusterExtractp0.9970.0281.028
debrisNc0.4370.0080.447
fullFlowframe-MarginEvents-method0.3520.0000.353
fullFlowframe-PhytopFilter-method0.7580.0120.773
fullFlowframe0.3790.0200.400
gateFunc11.978 0.76210.270
ggpairsDens6.5950.4907.102
ggplotDens0.8740.0400.916
ggplotDens21.5500.1361.689
goodfcs0.0550.0000.056
is.DebrisFilter000
is.MarginEvents000
is.PhytopFilter000
is.flowFrame000
is.flowSet0.0010.0000.001
lnTrans0.2350.0080.244
newFlowframe0.2420.0240.266
nona0.1270.0200.148
noneg0.2070.0080.216
oneDgate0.2670.0200.288
pairsPlot2.2060.0522.264
pigmentGate0.3230.0080.333
reducedFlowframe-MarginEvents-method0.3520.0040.358
reducedFlowframe0.3510.0040.356
retain0.0160.0030.019
rowNumbers0.2400.0200.261
summaries-DebrisFilter-method0.3490.0040.354
summaries-MarginEvents-method0.3620.0120.374
summaries-PhytopFilter-method0.7290.0080.740
summaries0.3730.0040.378