| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-02-10 11:32 -0500 (Tue, 10 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4862 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 690/2351 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| epiSeeker 0.99.14 (landing page) Guangchuang Yu
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for epiSeeker in R Universe. | ||||||||||||||
|
To the developers/maintainers of the epiSeeker package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/epiSeeker.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: epiSeeker |
| Version: 0.99.14 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data epiSeeker |
| StartedAt: 2026-02-09 17:32:48 -0500 (Mon, 09 Feb 2026) |
| EndedAt: 2026-02-09 17:34:23 -0500 (Mon, 09 Feb 2026) |
| EllapsedTime: 95.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data epiSeeker
###
##############################################################################
##############################################################################
* checking for file ‘epiSeeker/DESCRIPTION’ ... OK
* preparing ‘epiSeeker’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘epiSeeker.rmd’ using rmarkdown
Quitting from epiSeeker.rmd:296-318 [plot-motif-prof]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `summarise()`:
ℹ In argument: `motif_score = unique(score)`.
ℹ In group 14: `motif = "ZBED4"`.
Caused by error:
! `motif_score` must be size 1, not 2.
ℹ To return more or less than 1 row per group, use `reframe()`.
---
Backtrace:
▆
1. ├─epiSeeker::plotMotifProf(motifMatrix, interactive = TRUE)
2. │ └─... %>% left_join(df, by = "motif")
3. ├─dplyr::left_join(., df, by = "motif")
4. ├─dplyr::summarise(...)
5. ├─dplyr:::summarise.grouped_df(...)
6. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), by, "summarise")
7. │ └─base::withCallingHandlers(...)
8. └─dplyr:::dplyr_internal_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'epiSeeker.rmd' failed with diagnostics:
ℹ In argument: `motif_score = unique(score)`.
ℹ In group 14: `motif = "ZBED4"`.
Caused by error:
! `motif_score` must be size 1, not 2.
ℹ To return more or less than 1 row per group, use `reframe()`.
--- failed re-building ‘epiSeeker.rmd’
SUMMARY: processing the following file failed:
‘epiSeeker.rmd’
Error: Vignette re-building failed.
Execution halted