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###
### Running command:
###
###   rm -rf geneXtendeR.buildbin-libdir && mkdir geneXtendeR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh geneXtendeR_1.37.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R geneXtendeR.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=geneXtendeR.buildbin-libdir geneXtendeR_1.37.0.tar.gz'
>>>>>>> 

* installing *source* package ‘geneXtendeR’ ...
** this is package ‘geneXtendeR’ version ‘1.37.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c annotate.c -o annotate.o
annotate.c:159:94: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
  159 |                 Rf_error("annotate() doesn't handle output lines longer than %d characters", sizeof(Buffer));
      |                                                                              ~~              ^~~~~~~~~~~~~~
      |                                                                              %lu
annotate.c:191:101: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
  191 |                         Rf_error("annotate() doesn't handle output lines longer than %d characters",sizeof(Buffer));
      |                                                                                      ~~             ^~~~~~~~~~~~~~
      |                                                                                      %lu
annotate.c:199:101: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
  199 |                         Rf_error("annotate() doesn't handle output lines longer than %d characters",sizeof(Buffer));
      |                                                                                      ~~             ^~~~~~~~~~~~~~
      |                                                                                      %lu
annotate.c:208:101: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
  208 |                         Rf_error("annotate() doesn't handle output lines longer than %d characters",sizeof(Buffer));
      |                                                                                      ~~             ^~~~~~~~~~~~~~
      |                                                                                      %lu
annotate.c:228:97: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
  228 |                     Rf_error("annotate() doesn't handle output lines longer than %d characters",sizeof(Buffer));
      |                                                                                  ~~             ^~~~~~~~~~~~~~
      |                                                                                  %lu
5 warnings generated.
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c extract_number.c -o extract_number.o
extract_number.c:50:12: warning: variable 'pvcfcol1_1' set but not used [-Wunused-but-set-variable]
   50 |     char * pvcfcol1_1;
      |            ^
extract_number.c:51:12: warning: variable 'pvcfcol2_2' set but not used [-Wunused-but-set-variable]
   51 |     char * pvcfcol2_2;
      |            ^
extract_number.c:52:12: warning: variable 'pvcfcol3_3' set but not used [-Wunused-but-set-variable]
   52 |     char * pvcfcol3_3;
      |            ^
extract_number.c:53:12: warning: variable 'pvcfcol4_4' set but not used [-Wunused-but-set-variable]
   53 |     char * pvcfcol4_4;
      |            ^
extract_number.c:54:12: warning: variable 'pvcfcol5_5' set but not used [-Wunused-but-set-variable]
   54 |     char * pvcfcol5_5;
      |            ^
extract_number.c:66:10: warning: variable 'j_1' set but not used [-Wunused-but-set-variable]
   66 |     long j_1;
      |          ^
extract_number.c:72:10: warning: variable 'n_1' set but not used [-Wunused-but-set-variable]
   72 |     long n_1;
      |          ^
7 warnings generated.
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c extract_peaks.c -o extract_peaks.o
extract_peaks.c:202:94: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
  202 |                 Rf_error("annotate() doesn't handle output lines longer than %d characters", sizeof(Buffer));
      |                                                                              ~~              ^~~~~~~~~~~~~~
      |                                                                              %lu
1 warning generated.
clang -arch arm64 -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o geneXtendeR.so annotate.o extract_number.o extract_peaks.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Users/biocbuild/bbs-3.23-bioc/meat/geneXtendeR.buildbin-libdir/00LOCK-geneXtendeR/00new/geneXtendeR/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error: object ‘id’ is not exported by 'namespace:dplyr'
Execution halted
ERROR: lazy loading failed for package ‘geneXtendeR’
* removing ‘/Users/biocbuild/bbs-3.23-bioc/meat/geneXtendeR.buildbin-libdir/geneXtendeR’