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This page was generated on 2026-01-08 11:35 -0500 (Thu, 08 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-12-22 r89219) -- "Unsuffered Consequences" | 4815 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4593 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 886/2332 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| glmGamPoi 1.23.0 (landing page) Constantin Ahlmann-Eltze
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the glmGamPoi package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/glmGamPoi.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: glmGamPoi |
| Version: 1.23.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL glmGamPoi |
| StartedAt: 2026-01-07 15:12:28 -0500 (Wed, 07 Jan 2026) |
| EndedAt: 2026-01-07 15:12:32 -0500 (Wed, 07 Jan 2026) |
| EllapsedTime: 4.3 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL glmGamPoi
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’
* installing *source* package ‘glmGamPoi’ ...
** this is package ‘glmGamPoi’ version ‘1.23.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using C++17
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/beachmat/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/assorthead/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/beachmat/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/assorthead/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c beta_estimation.cpp -o beta_estimation.o
In file included from beta_estimation.cpp:2:
In file included from /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include/RcppArmadillo.h:32:
In file included from /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26:
In file included from /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include/RcppCommon.h:133:
In file included from /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include/Rcpp/proxy/proxy.h:24:
/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include/Rcpp/proxy/AttributeProxy.h:91:9: error: use of undeclared identifier 'R_hasAttrib'
return R_hasAttrib(static_cast<const CLASS&>(*this).get__(),
^
beta_estimation.cpp:215:12: note: in instantiation of member function 'Rcpp::AttributeProxyPolicy<Rcpp::Vector<14>>::hasAttribute' requested here
if(tmp.hasAttribute("target")){
^
1 error generated.
make: *** [beta_estimation.o] Error 1
ERROR: compilation failed for package ‘glmGamPoi’
* removing ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/glmGamPoi’
* restoring previous ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/glmGamPoi’