| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-03-18 11:45 -0400 (Tue, 18 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4537 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4543 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4459 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 946/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| hca 1.15.0 (landing page) Martin Morgan
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the hca package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/hca.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: hca |
| Version: 1.15.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data hca |
| StartedAt: 2025-03-17 17:05:55 -0400 (Mon, 17 Mar 2025) |
| EndedAt: 2025-03-17 17:06:16 -0400 (Mon, 17 Mar 2025) |
| EllapsedTime: 20.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data hca
###
##############################################################################
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* checking for file ‘hca/DESCRIPTION’ ... OK
* preparing ‘hca’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘hca_manifest_vignette.Rmd’ using rmarkdown
Quitting from hca_manifest_vignette.Rmd:70-76 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection to 'https://service.azul.data.humancellatlas.org/openapi'
---
Backtrace:
▆
1. └─hca::filters(...)
2. └─hca:::.filters_validate(filters_list)
3. └─hca::facet_options()
4. └─hca:::.hca_openapi()
5. └─jsonlite::read_json(api)
6. └─jsonlite::parse_json(...)
7. └─jsonlite:::parse_and_simplify(...)
8. └─jsonlite:::parseJSON(txt, bigint_as_char)
9. └─jsonlite:::parse_con(txt, bigint_as_char)
10. ├─base::open(con, "rb")
11. └─base::open.connection(con, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'hca_manifest_vignette.Rmd' failed with diagnostics:
cannot open the connection to 'https://service.azul.data.humancellatlas.org/openapi'
--- failed re-building ‘hca_manifest_vignette.Rmd’
--- re-building ‘hca_vignette.Rmd’ using rmarkdown
Quitting from hca_vignette.Rmd:67-69 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection to 'https://service.azul.data.humancellatlas.org/openapi'
---
Backtrace:
▆
1. └─hca::projects(size = 200)
2. └─hca::filters()
3. └─hca:::.filters_validate(filters_list)
4. └─hca::facet_options()
5. └─hca:::.hca_openapi()
6. └─jsonlite::read_json(api)
7. └─jsonlite::parse_json(...)
8. └─jsonlite:::parse_and_simplify(...)
9. └─jsonlite:::parseJSON(txt, bigint_as_char)
10. └─jsonlite:::parse_con(txt, bigint_as_char)
11. ├─base::open(con, "rb")
12. └─base::open.connection(con, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'hca_vignette.Rmd' failed with diagnostics:
cannot open the connection to 'https://service.azul.data.humancellatlas.org/openapi'
--- failed re-building ‘hca_vignette.Rmd’
SUMMARY: processing the following files failed:
‘hca_manifest_vignette.Rmd’ ‘hca_vignette.Rmd’
Error: Vignette re-building failed.
Execution halted