Multiple platform build/check report for BioC 3.21 - BUILD results for immApex on palomino7

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4719
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"	4480
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences"	4491
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4444
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for immApex on palomino7

To the developers/maintainers of the immApex package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immApex.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: immApex

Version: 1.1.0

Command: chmod a+r immApex -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data immApex

StartedAt: 2025-02-05 19:26:37 -0500 (Wed, 05 Feb 2025)

EndedAt: 2025-02-05 19:29:59 -0500 (Wed, 05 Feb 2025)

EllapsedTime: 201.9 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r immApex -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data immApex
###
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* checking for file 'immApex/DESCRIPTION' ... OK
* preparing 'immApex':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'immApex.Rmd' using rmarkdown
2025-02-05 19:28:21.595623: I tensorflow/core/util/port.cc:153] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`.
2025-02-05 19:28:35.107374: I tensorflow/core/util/port.cc:153] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`.
2025-02-05 19:29:31.627656: I tensorflow/core/platform/cpu_feature_guard.cc:210] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.
To enable the following instructions: AVX2 AVX512F AVX512_VNNI FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.
WARNING:tensorflow:From C:\PYTHON~2\Lib\site-packages\keras\src\backend\tensorflow\core.py:204: The name tf.placeholder is deprecated. Please use tf.compat.v1.placeholder instead.


Quitting from lines 173-180 [unnamed-chunk-8] (immApex.Rmd)
Error: processing vignette 'immApex.Rmd' failed with diagnostics:
Timeout was reached [www.imgt.org]: Failed to connect to www.imgt.org port 443 after 10005 ms: Timeout was reached
--- failed re-building 'immApex.Rmd'

SUMMARY: processing the following file failed:
  'immApex.Rmd'

Error: Vignette re-building failed.
Execution halted