| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-01-21 11:35 -0500 (Wed, 21 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4805 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4539 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1417/2343 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mumosa 1.19.0 (landing page) Aaron Lun
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the mumosa package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mumosa.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: mumosa |
| Version: 1.19.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mumosa |
| StartedAt: 2026-01-20 17:05:33 -0500 (Tue, 20 Jan 2026) |
| EndedAt: 2026-01-20 17:06:19 -0500 (Tue, 20 Jan 2026) |
| EllapsedTime: 45.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mumosa
###
##############################################################################
##############################################################################
* checking for file ‘mumosa/DESCRIPTION’ ... OK
* preparing ‘mumosa’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘overview.Rmd’ using rmarkdown
2026-01-20 17:05:59.152 R[9958:784989871] XType: Using static font registry.
Quitting from overview.Rmd:225-230 [unnamed-chunk-18]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `queryKNN()`:
! argument "X" is missing, with no default
---
Backtrace:
▆
1. ├─mumosa::findTopCorrelations(...)
2. └─mumosa::findTopCorrelations(...)
3. └─mumosa (local) .local(x, number, ...)
4. └─mumosa:::.find_top_correlations(...)
5. └─BiocNeighbors::queryKNN(...)
6. └─methods::is(X, "BiocNeighborIndex")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'overview.Rmd' failed with diagnostics:
argument "X" is missing, with no default
--- failed re-building ‘overview.Rmd’
SUMMARY: processing the following file failed:
‘overview.Rmd’
Error: Vignette re-building failed.
Execution halted