| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2025-12-16 11:34 -0500 (Tue, 16 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4875 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4583 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1903/2332 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| scGraphVerse 1.1.0 (landing page) Francesco Cecere
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
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To the developers/maintainers of the scGraphVerse package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scGraphVerse.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: scGraphVerse |
| Version: 1.1.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data scGraphVerse |
| StartedAt: 2025-12-15 19:43:43 -0500 (Mon, 15 Dec 2025) |
| EndedAt: 2025-12-15 19:48:23 -0500 (Mon, 15 Dec 2025) |
| EllapsedTime: 279.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data scGraphVerse
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* checking for file ‘scGraphVerse/DESCRIPTION’ ... OK
* preparing ‘scGraphVerse’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘case_study.Rmd’ using rmarkdown
Quitting from case_study.Rmd:214-224 [comparecommunity]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `community_path()`:
! Package 'clusterProfiler' is required . Install it with: BiocManager::install('clusterProfiler') or set pathway_db = 'none'
---
Backtrace:
▆
1. └─scGraphVerse::community_path(consensus)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'case_study.Rmd' failed with diagnostics:
Package 'clusterProfiler' is required . Install it with: BiocManager::install('clusterProfiler') or set pathway_db = 'none'
--- failed re-building ‘case_study.Rmd’
--- re-building ‘simulation_study.Rmd’ using rmarkdown
Quitting from simulation_study.Rmd:312-316 [communities-gtruth]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `community_path()`:
! Package 'clusterProfiler' is required . Install it with: BiocManager::install('clusterProfiler') or set pathway_db = 'none'
---
Backtrace:
▆
1. └─scGraphVerse::community_path(adj_truth)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'simulation_study.Rmd' failed with diagnostics:
Package 'clusterProfiler' is required . Install it with: BiocManager::install('clusterProfiler') or set pathway_db = 'none'
--- failed re-building ‘simulation_study.Rmd’
SUMMARY: processing the following files failed:
‘case_study.Rmd’ ‘simulation_study.Rmd’
Error: Vignette re-building failed.
Execution halted