| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-26 11:36 -0400 (Tue, 26 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4938 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-05-01 r89994) -- "Because it was There" | 4640 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2043/2379 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| singIST 1.1.0 (landing page) Aitor Moruno-Cuenca
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | ||||||||||
| See other builds for singIST in R Universe. | ||||||||||||||
|
To the developers/maintainers of the singIST package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/singIST.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: singIST |
| Version: 1.1.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data singIST |
| StartedAt: 2026-05-25 17:43:29 -0400 (Mon, 25 May 2026) |
| EndedAt: 2026-05-25 17:47:03 -0400 (Mon, 25 May 2026) |
| EllapsedTime: 213.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data singIST
###
##############################################################################
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* checking for file ‘singIST/DESCRIPTION’ ... OK
* preparing ‘singIST’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘singISTvignette.Rmd’ using rmarkdown
Registered S3 method overwritten by 'lme4':
method from
na.action.merMod car
Registered S3 method overwritten by 'lme4':
method from
na.action.merMod car
Registered S3 method overwritten by 'lme4':
method from
na.action.merMod car
Registered S3 method overwritten by 'lme4':
method from
na.action.merMod car
Registered S3 method overwritten by 'lme4':
method from
na.action.merMod car
Registered S3 method overwritten by 'lme4':
method from
na.action.merMod car
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Quitting from singISTvignette.Rmd:478-482 [unnamed-chunk-18]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Your query has been redirected to https://status.ensembl.org indicating this Ensembl service is currently unavailable.
Look at ?useEnsembl for details on how to try a mirror site.
---
Backtrace:
▆
1. └─singIST::multiple_singISTrecapitulations(oxa_org, superpathways_fit)
2. └─singIST::singISTrecapitulations(...)
3. └─singIST::biological_link_function(object, model_object, ...)
4. └─singIST::orthology_mapping(...)
5. └─biomaRt::useMart(...)
6. └─biomaRt:::.useMart(...)
7. └─biomaRt:::.listMarts(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'singISTvignette.Rmd' failed with diagnostics:
Your query has been redirected to https://status.ensembl.org indicating this Ensembl service is currently unavailable.
Look at ?useEnsembl for details on how to try a mirror site.
--- failed re-building ‘singISTvignette.Rmd’
SUMMARY: processing the following file failed:
‘singISTvignette.Rmd’
Error: Vignette re-building failed.
Execution halted