Steve Lianoglou
| Snapshot Date: 2026-03-13 13:40 -0400 (Fri, 13 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/sparrow |
| git_branch: devel |
| git_last_commit: 03b668b |
| git_last_commit_date: 2025-10-29 11:12:41 -0400 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-14 11:34 -0400 (Sat, 14 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4837 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 4050 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2070/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| sparrow 1.17.0 (landing page) Steve Lianoglou
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for sparrow in R Universe. | ||||||||||||||
|
To the developers/maintainers of the sparrow package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sparrow.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: sparrow |
| Version: 1.17.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data sparrow |
| StartedAt: 2026-03-13 17:00:28 -0400 (Fri, 13 Mar 2026) |
| EndedAt: 2026-03-13 17:01:23 -0400 (Fri, 13 Mar 2026) |
| EllapsedTime: 54.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data sparrow
###
##############################################################################
##############################################################################
* checking for file ‘sparrow/DESCRIPTION’ ... OK
* preparing ‘sparrow’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘sparrow.Rmd’ using rmarkdown
Quitting from sparrow.Rmd:493-498 [ssscore]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! 'GSVA' package required, please install it.
---
Backtrace:
▆
1. └─sparrow::scoreSingleSamples(...)
2. └─base::sapply(...)
3. └─base::lapply(X = X, FUN = FUN, ...)
4. └─sparrow (local) FUN(X[[i]], ...)
5. └─sparrow (local) fn(...)
6. └─sparrow:::reqpkg("GSVA")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'sparrow.Rmd' failed with diagnostics:
'GSVA' package required, please install it.
--- failed re-building ‘sparrow.Rmd’
SUMMARY: processing the following file failed:
‘sparrow.Rmd’
Error: Vignette re-building failed.
Execution halted