Back to Long Tests report for BioC 3.21

This page was generated on 2025-02-08 23:55 -0500 (Sat, 08 Feb 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 4719
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" 4480
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" 4491
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 8/30HostnameOS / ArchCHECK
biodbNcbi 1.11.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-02-08 11:09 -0500 (Sat, 08 Feb 2025)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: devel
git_last_commit: 4a3f8f2
git_last_commit_date: 2024-10-29 11:09:30 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR  
palomino7Windows Server 2022 Datacenter / x64  WARNINGS  
lconwaymacOS 12.7.1 Monterey / x86_64  WARNINGS  

CHECK results for biodbNcbi on palomino7

To the developers/maintainers of the biodbNcbi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbNcbi
Version: 1.11.0
Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.11.0.tar.gz
StartedAt: 2025-02-08 16:03:05 -0500 (Sat, 08 Feb 2025)
EndedAt: 2025-02-08 16:05:38 -0500 (Sat, 08 Feb 2025)
EllapsedTime: 153.3 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2025-02-08 16:03:55.107][biodb::testContext]
biodb.INFO [2025-02-08 16:03:55.110][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-08 16:03:55.111][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2025-02-08 16:03:55.112][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-08 16:03:55.113][biodb::testContext]
biodb.INFO [2025-02-08 16:03:55.119][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-08 16:03:55.122][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-08 16:03:55.130][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:03:55.131][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-08 16:03:55.132][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-08 16:03:55.133][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.137][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-08 16:03:55.153][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-08 16:03:55.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.157][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-08 16:03:55.158][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-08 16:03:55.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.163][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-08 16:03:55.164][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-08 16:03:55.165][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-08 16:03:55.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.169][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-08 16:03:55.170][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-08 16:03:55.172][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-08 16:03:55.173][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.176][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-08 16:03:55.177][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-08 16:03:55.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.181][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-08 16:03:55.183][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-08 16:03:55.184][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-08 16:03:55.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.188][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-08 16:03:55.189][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-08 16:03:55.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.193][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-08 16:03:55.195][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-08 16:03:55.196][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-08 16:03:55.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.200][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-08 16:03:55.201][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-08 16:03:55.202][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-08 16:03:55.204][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-08 16:03:55.205][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-08 16:03:55.206][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-08 16:03:55.207][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.210][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-08 16:03:55.211][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-08 16:03:55.213][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.216][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-08 16:03:55.217][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-08 16:03:55.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.221][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-08 16:03:55.222][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-08 16:03:55.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.227][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-08 16:03:55.228][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-08 16:03:55.229][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.232][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-08 16:03:55.233][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-08 16:03:55.234][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.238][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-08 16:03:55.239][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-08 16:03:55.242][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-08 16:03:55.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.247][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-08 16:03:55.248][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-08 16:03:55.249][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-08 16:03:55.250][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.255][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-08 16:03:55.283][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:55.303][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-08 16:03:55.304][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.305][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:03:55.307][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.308][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.309][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:55.310][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.311][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-08 16:03:55.312][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:03:55.314][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.315][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-08 16:03:55.316][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:03:55.317][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:55.318][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.320][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:03:55.320][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:03:55.320][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:03:55.320][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-08 16:03:55.320][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-08 16:03:55.321][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:03:55.322][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:55.323][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:55.324][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:03:55.325][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:55.326][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:55.328][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.329][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:55.330][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:03:55.331][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:03:55.332][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:55.333][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:55.335][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-08 16:03:55.337][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:55.338][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-08 16:03:55.339][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.340][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:03:55.341][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.342][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.344][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:55.345][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.346][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-08 16:03:55.347][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:03:55.348][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.349][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-08 16:03:55.351][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:03:55.352][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:55.353][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.354][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:03:55.354][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:03:55.354][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:03:55.354][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-08 16:03:55.354][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-08 16:03:55.355][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:03:55.356][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:55.358][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:55.359][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:03:55.360][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:55.361][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:55.362][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.363][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:55.364][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:03:55.365][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:03:55.366][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:55.368][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:55.369][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-08 16:03:55.371][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.372][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-08 16:03:55.373][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.374][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:03:55.375][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.377][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.378][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:55.379][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.380][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-08 16:03:55.381][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:03:55.383][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:55.384][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-08 16:03:55.385][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:03:55.386][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:55.387][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.388][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:55.389][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:03:55.391][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:55.392][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:55.393][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:03:55.394][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:55.395][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:55.396][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.397][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:55.398][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:03:55.399][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:03:55.401][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:55.402][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:55.403][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-08 16:03:55.405][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.406][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-08 16:03:55.407][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.408][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:03:55.410][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.411][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.412][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:55.413][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.414][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-08 16:03:55.415][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:03:55.417][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:55.418][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-08 16:03:55.419][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:03:55.420][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:55.421][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.422][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:55.424][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:03:55.425][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:55.426][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:55.427][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:03:55.428][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:55.429][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:55.430][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.431][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:55.433][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:03:55.434][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:03:55.435][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:55.436][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:55.439][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:03:55.440][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.504][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.509][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.540][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-08 16:03:55.544][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-08 16:03:55.546][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-08 16:03:55.547][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-08 16:03:55.549][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-08 16:03:55.551][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-08 16:03:55.552][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-08 16:03:55.554][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-08 16:03:55.555][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-08 16:03:55.557][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-08 16:03:55.558][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-08 16:03:55.560][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-08 16:03:55.561][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-08 16:03:55.563][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-08 16:03:55.564][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-08 16:03:55.566][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-08 16:03:55.567][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-08 16:03:55.569][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-08 16:03:55.570][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-08 16:03:55.572][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-08 16:03:55.573][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-08 16:03:55.575][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-08 16:03:55.577][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-08 16:03:55.578][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-08 16:03:55.580][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-08 16:03:55.581][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-08 16:03:55.583][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-08 16:03:55.584][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-08 16:03:55.586][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-08 16:03:55.587][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-08 16:03:55.589][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-08 16:03:55.590][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-08 16:03:55.592][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-08 16:03:55.593][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-08 16:03:55.595][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-08 16:03:55.596][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-08 16:03:55.598][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-08 16:03:55.599][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-08 16:03:55.601][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-08 16:03:55.602][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-08 16:03:55.604][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-08 16:03:55.605][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-08 16:03:55.607][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-08 16:03:55.609][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-08 16:03:55.610][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-08 16:03:55.612][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-08 16:03:55.613][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-08 16:03:55.615][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-08 16:03:55.616][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-08 16:03:55.618][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-08 16:03:55.619][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-08 16:03:55.621][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-08 16:03:55.622][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-08 16:03:55.624][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-08 16:03:55.625][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-08 16:03:55.627][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-08 16:03:55.628][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-08 16:03:55.630][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-08 16:03:55.631][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-08 16:03:55.633][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-08 16:03:55.635][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-08 16:03:55.636][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-08 16:03:55.638][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-08 16:03:55.639][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-08 16:03:55.641][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-08 16:03:55.642][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-08 16:03:55.644][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-08 16:03:55.645][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-08 16:03:55.647][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-08 16:03:55.648][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-08 16:03:55.650][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-08 16:03:55.651][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-08 16:03:55.653][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-08 16:03:55.654][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-08 16:03:55.656][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-08 16:03:55.657][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-08 16:03:55.659][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-08 16:03:55.660][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-08 16:03:55.662][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-08 16:03:55.663][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-08 16:03:55.665][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-08 16:03:55.666][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-08 16:03:55.668][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-08 16:03:55.691][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-08 16:03:55.693][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-08 16:03:55.696][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:03:55.697][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.699][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:55.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:55.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.712][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:55.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:55.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:55.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:55.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:55.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:55.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:55.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:55.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.771][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:55.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:55.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.778][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:55.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:55.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:55.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:55.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:55.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:55.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:55.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:55.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.808][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:55.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:55.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:55.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:55.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:55.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:55.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:55.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:55.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:55.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:55.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:55.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:55.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:55.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:55.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:55.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:55.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:55.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:55.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:55.862][bdb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-02-08 16:03:55.871][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-02-08 16:03:55.873][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.874][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-02-08 16:03:55.875][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.876][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:03:55.877][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.879][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.880][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.881][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.882][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-02-08 16:03:55.883][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:03:55.885][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.886][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-02-08 16:03:55.887][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:03:55.888][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-02-08 16:03:55.888][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-02-08 16:03:55.889][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:55.890][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:55.892][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-08 16:03:55.893][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:55.894][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:55.895][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:03:55.896][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:55.897][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:55.898][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.899][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-08 16:03:55.899][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-02-08 16:03:55.901][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:03:55.902][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:03:55.903][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.904][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:55.905][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-02-08 16:03:55.907][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.908][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-02-08 16:03:55.910][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.911][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:03:55.912][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.913][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.914][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.915][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.916][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:03:55.918][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:03:55.919][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.920][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-02-08 16:03:55.921][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:03:55.922][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-02-08 16:03:55.922][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-02-08 16:03:55.922][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-02-08 16:03:55.922][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-02-08 16:03:55.922][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-02-08 16:03:55.922][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-02-08 16:03:55.923][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:55.925][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:03:55.926][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-08 16:03:55.927][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:55.928][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:55.929][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:03:55.930][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:55.931][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:55.932][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.934][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:03:55.934][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:03:55.935][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:03:55.936][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:03:55.937][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.938][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:55.939][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-08 16:03:55.941][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:55.943][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-02-08 16:03:55.944][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.945][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:03:55.946][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.947][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.948][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.949][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.951][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:03:55.952][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:03:55.953][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.954][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-02-08 16:03:55.955][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:03:55.956][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-08 16:03:55.956][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:55.956][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:55.956][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:55.956][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:55.956][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:55.956][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:55.956][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:55.956][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:55.956][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:55.956][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-02-08 16:03:55.956][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:55.956][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:55.956][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:55.958][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:55.963][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:03:55.963][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:03:55.963][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:03:55.965][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-08 16:03:55.966][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:55.967][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:55.968][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:03:55.969][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:55.970][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:55.971][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.972][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:03:55.972][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:03:55.972][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-08 16:03:55.974][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:03:55.975][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:03:55.976][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.977][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-08 16:03:55.978][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-08 16:03:55.980][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.981][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-02-08 16:03:55.983][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.984][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:03:55.985][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.986][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.987][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.988][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:03:55.989][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:03:55.991][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:03:55.992][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:55.993][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-02-08 16:03:55.994][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:03:55.995][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-02-08 16:03:55.995][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-08 16:03:55.997][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:55.998][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:55.999][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-08 16:03:56.000][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:56.001][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:56.002][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:03:56.004][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:56.005][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:56.006][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:03:56.007][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:03:56.007][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:03:56.007][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-08 16:03:56.008][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:03:56.009][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:03:56.010][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:56.011][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-08 16:03:56.017][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-02-08 16:03:56.019][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-08 16:03:56.020][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-08 16:03:56.022][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-02-08 16:03:56.024][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-08 16:03:56.025][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-02-08 16:03:56.045][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2025-02-08 16:03:56.046][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2025-02-08 16:03:56.050][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2025-02-08 16:03:56.054][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2025-02-08 16:03:56.058][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:03:56.059][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:03:56.061][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2025-02-08 16:03:56.062][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:03:56.063][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:03:56.064][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2025-02-08 16:03:56.074][biodb::testThat]
biodb.INFO [2025-02-08 16:03:56.076][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-02-08 16:03:56.077][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:03:56.078][biodb::testThat]
biodb.TRACE[2025-02-08 16:03:56.084][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2025-02-08 16:03:56.086][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:03:56.089][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-08 16:03:56.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:56.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:56.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:56.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:56.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:56.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:56.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:56.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.151][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:03:56.162][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.164][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.196][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:03:56.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:03:56.276][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2025-02-08 16:03:56.279][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.284][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.312][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:03:56.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:03:56.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.317][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:03:56.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:03:56.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.321][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:03:56.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:03:56.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.326][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:03:56.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:03:56.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.496][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.497][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.499][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.515][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:03:56.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.520][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.525][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.530][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:03:56.531][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.533][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.534][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:03:56.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.554][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.556][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.558][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.565][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.568][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.588][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2025-02-08 16:03:56.618][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:03:56.619][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-08 16:03:56.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:56.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:56.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:56.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:56.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:56.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:56.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:56.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.664][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:03:56.665][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.667][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.669][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:03:56.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:03:56.726][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2025-02-08 16:03:56.744][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.749][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.754][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:03:56.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:03:56.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.758][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:03:56.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:03:56.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.763][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:03:56.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:03:56.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.768][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:03:56.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:03:56.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:56.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.873][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.875][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.877][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.892][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:03:56.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.897][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.902][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.907][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:03:56.908][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.910][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.911][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:03:56.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.926][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.927][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:56.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.929][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:56.936][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:56.937][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:56.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:56.939][ef$get] fields variable is a list.
biodb.INFO [2025-02-08 16:03:56.951][biodb::testThat]
biodb.INFO [2025-02-08 16:03:56.953][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-08 16:03:56.954][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:03:56.955][biodb::testThat]
biodb.DEBUG[2025-02-08 16:03:56.958][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2025-02-08 16:03:56.963][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-08 16:03:56.969][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.INFO [2025-02-08 16:03:56.971][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704" for "ncbi.ccds-c3bf0257a03be04fd46e362b99907704".
biodb.TRACE[2025-02-08 16:03:56.973][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-02-08 16:03:56.974][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:03:56.976][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:03:56.977][conn$getEntryContent] 2 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-08 16:03:56.978][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:03:56.979][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-08 16:03:56.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:56.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:56.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:56.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:56.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:56.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:56.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:56.999][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2025-02-08 16:03:57.022][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:03:57.024][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:03:57.025][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.TRACE[2025-02-08 16:03:58.637][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1).
biodb.DEBUG[2025-02-08 16:03:59.954][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:03:59.957][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.content"
biodb.TRACE[2025-02-08 16:03:59.984][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.request"
biodb.DEBUG[2025-02-08 16:03:59.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:59.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:59.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:59.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:59.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:59.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:59.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:00.018][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.DEBUG[2025-02-08 16:04:00.032][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:04:00.033][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:04:00.046][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.TRACE[2025-02-08 16:04:01.442][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1).
biodb.DEBUG[2025-02-08 16:04:02.759][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:04:02.761][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.content"
biodb.TRACE[2025-02-08 16:04:02.766][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.request"
biodb.TRACE[2025-02-08 16:04:02.769][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html"
biodb.DEBUG[2025-02-08 16:04:02.773][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:04:02.775][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2025-02-08 16:04:02.776][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2025-02-08 16:04:02.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:02.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:02.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:02.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:02.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:02.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:02.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:02.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:02.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:02.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.820][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:02.821][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:02.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.823][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.825][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:02.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:02.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:02.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:02.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:02.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:02.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:02.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:02.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:02.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:02.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:02.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:02.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:02.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:02.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:02.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:02.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:02.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:02.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:02.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:02.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:02.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:02.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:02.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:02.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:02.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:02.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.893][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:02.894][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:02.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.896][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.898][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:02.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:02.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:02.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:02.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:02.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:02.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:02.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:02.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:02.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:02.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:02.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:02.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:02.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:02.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:02.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:02.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:02.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:02.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:02.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:02.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:02.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:02.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:02.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:02.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:02.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:02.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:02.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:02.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:02.971][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2025-02-08 16:04:02.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:02.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:02.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:02.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:02.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:02.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:02.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:02.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:02.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:02.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:02.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:02.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:03.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:03.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:03.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:03.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:03.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:03.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:04:03.018][biodb::testThat]
biodb.INFO [2025-02-08 16:04:03.020][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-08 16:04:03.021][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:03.022][biodb::testThat]
biodb.INFO [2025-02-08 16:04:03.031][biodb::testThat]
biodb.INFO [2025-02-08 16:04:03.032][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-02-08 16:04:03.034][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:03.035][biodb::testThat]
biodb.WARN [2025-02-08 16:04:03.052][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2025-02-08 16:04:03.075][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2025-02-08 16:04:03.088][biodb::testThat]
biodb.INFO [2025-02-08 16:04:03.089][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-02-08 16:04:03.090][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:03.091][biodb::testThat]
biodb.TRACE[2025-02-08 16:04:03.117][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:03.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:03.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:03.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:03.122][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:03.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:03.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:03.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:03.126][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:03.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:03.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:03.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:03.131][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:03.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:03.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:03.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:03.136][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:03.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:03.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:03.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:03.141][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:03.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:03.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:03.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:03.154][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:03.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:03.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:03.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:03.158][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:03.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:03.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:03.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:03.163][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:03.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:03.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:03.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:03.168][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:03.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:03.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:03.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:03.172][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:03.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:03.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:03.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:03.177][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:03.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:03.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:03.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:04:03.195][biodb::testThat]
biodb.INFO [2025-02-08 16:04:03.196][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-08 16:04:03.197][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:03.198][biodb::testThat]
biodb.INFO [2025-02-08 16:04:03.210][biodb::testThat]
biodb.INFO [2025-02-08 16:04:03.211][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-08 16:04:03.213][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:03.214][biodb::testThat]
biodb.INFO [2025-02-08 16:04:03.224][biodb::testThat]
biodb.INFO [2025-02-08 16:04:03.226][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-08 16:04:03.227][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:03.228][biodb::testThat]
biodb.DEBUG[2025-02-08 16:04:03.232][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2025-02-08 16:04:04.553][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2025-02-08 16:04:05.893][biodb::testThat]
biodb.INFO [2025-02-08 16:04:05.894][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-08 16:04:05.896][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:05.897][biodb::testThat]
biodb.INFO [2025-02-08 16:04:05.905][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-08 16:04:05.907][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2025-02-08 16:04:05.908][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2025-02-08 16:04:05.909][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-08 16:04:05.910][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:05.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:05.912][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:05.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:05.914][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:05.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-08 16:04:05.926][biodb::testContext]
biodb.INFO [2025-02-08 16:04:05.927][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-08 16:04:05.928][biodb::testContext] Test context - Gene long tests
biodb.INFO [2025-02-08 16:04:05.929][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-08 16:04:05.930][biodb::testContext]
biodb.INFO [2025-02-08 16:04:05.933][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-08 16:04:05.935][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-08 16:04:05.941][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:04:05.942][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-08 16:04:05.943][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-08 16:04:05.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:05.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:05.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:05.947][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-08 16:04:05.949][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-08 16:04:05.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:05.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:05.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:05.953][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-08 16:04:05.954][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-08 16:04:05.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:05.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:05.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:05.958][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-08 16:04:05.959][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-08 16:04:05.961][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-08 16:04:05.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:05.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:05.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:05.965][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-08 16:04:05.966][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-08 16:04:05.967][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-08 16:04:05.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:05.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:05.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:05.979][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-08 16:04:05.980][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-08 16:04:05.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:05.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:05.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:05.984][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-08 16:04:05.985][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-08 16:04:05.986][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-08 16:04:05.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:05.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:05.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:05.991][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-08 16:04:05.992][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-08 16:04:05.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:05.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:05.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:05.996][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-08 16:04:05.997][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-08 16:04:05.999][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-08 16:04:06.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.003][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-08 16:04:06.004][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-08 16:04:06.006][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-08 16:04:06.007][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-08 16:04:06.008][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-08 16:04:06.009][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-08 16:04:06.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.013][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-08 16:04:06.015][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-08 16:04:06.016][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.019][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-08 16:04:06.020][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-08 16:04:06.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.025][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-08 16:04:06.026][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-08 16:04:06.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.030][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-08 16:04:06.031][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-08 16:04:06.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.036][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-08 16:04:06.037][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-08 16:04:06.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.041][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-08 16:04:06.042][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-08 16:04:06.046][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-08 16:04:06.047][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.050][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-08 16:04:06.051][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-08 16:04:06.053][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-08 16:04:06.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.057][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-08 16:04:06.059][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:06.060][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-08 16:04:06.062][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.063][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:04:06.064][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.065][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.066][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:06.068][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.069][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-08 16:04:06.070][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:04:06.071][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.073][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-08 16:04:06.074][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:04:06.075][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:06.077][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.078][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:04:06.078][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:04:06.078][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:04:06.078][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-08 16:04:06.078][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-08 16:04:06.079][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:04:06.080][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:06.081][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:06.083][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:04:06.084][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:06.085][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:06.086][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.087][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:06.088][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:04:06.090][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:04:06.091][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:06.092][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:06.093][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-08 16:04:06.095][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:06.096][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-08 16:04:06.098][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.099][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:04:06.100][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.101][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.102][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:06.108][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.110][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-08 16:04:06.111][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:04:06.112][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.113][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-08 16:04:06.114][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:04:06.115][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:06.117][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.118][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:04:06.118][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:04:06.118][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:04:06.118][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-08 16:04:06.118][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-08 16:04:06.119][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:04:06.120][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:06.121][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:06.122][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:04:06.124][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:06.125][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:06.126][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.127][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:06.128][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:04:06.129][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:04:06.130][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:06.132][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:06.133][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-08 16:04:06.135][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.136][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-08 16:04:06.137][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.138][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:04:06.140][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.141][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.142][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:06.143][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.144][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-08 16:04:06.146][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:04:06.147][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:06.148][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-08 16:04:06.149][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:04:06.150][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:06.152][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.153][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:06.154][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:04:06.155][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:06.156][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:06.157][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:04:06.158][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:06.160][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:06.161][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.162][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:06.163][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:04:06.164][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:04:06.165][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:06.166][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:06.168][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-08 16:04:06.170][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.171][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-08 16:04:06.172][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.173][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:04:06.174][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.175][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.177][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:06.178][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.179][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-08 16:04:06.180][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:04:06.181][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:06.183][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-08 16:04:06.184][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:04:06.185][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:06.186][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.187][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:06.188][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:04:06.190][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:06.191][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:06.192][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:04:06.193][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:06.194][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:06.195][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.196][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:06.198][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:04:06.199][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:04:06.200][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:06.201][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:06.202][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:04:06.203][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.206][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.242][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.253][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.259][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.301][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-08 16:04:06.303][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-08 16:04:06.305][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-08 16:04:06.306][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-08 16:04:06.308][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-08 16:04:06.309][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-08 16:04:06.311][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-08 16:04:06.312][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-08 16:04:06.314][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-08 16:04:06.315][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-08 16:04:06.317][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-08 16:04:06.318][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-08 16:04:06.320][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-08 16:04:06.321][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-08 16:04:06.323][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-08 16:04:06.324][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-08 16:04:06.326][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-08 16:04:06.327][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-08 16:04:06.329][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-08 16:04:06.330][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-08 16:04:06.332][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-08 16:04:06.334][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-08 16:04:06.335][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-08 16:04:06.337][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-08 16:04:06.338][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-08 16:04:06.340][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-08 16:04:06.341][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-08 16:04:06.343][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-08 16:04:06.344][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-08 16:04:06.346][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-08 16:04:06.347][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-08 16:04:06.349][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-08 16:04:06.350][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-08 16:04:06.357][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-08 16:04:06.358][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-08 16:04:06.360][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-08 16:04:06.361][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-08 16:04:06.362][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-08 16:04:06.364][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-08 16:04:06.366][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-08 16:04:06.367][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-08 16:04:06.369][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-08 16:04:06.370][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-08 16:04:06.372][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-08 16:04:06.373][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-08 16:04:06.375][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-08 16:04:06.376][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-08 16:04:06.378][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-08 16:04:06.380][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-08 16:04:06.381][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-08 16:04:06.383][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-08 16:04:06.384][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-08 16:04:06.386][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-08 16:04:06.387][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-08 16:04:06.389][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-08 16:04:06.390][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-08 16:04:06.392][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-08 16:04:06.393][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-08 16:04:06.395][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-08 16:04:06.396][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-08 16:04:06.398][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-08 16:04:06.399][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-08 16:04:06.401][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-08 16:04:06.403][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-08 16:04:06.404][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-08 16:04:06.406][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-08 16:04:06.407][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-08 16:04:06.409][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-08 16:04:06.410][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-08 16:04:06.412][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-08 16:04:06.413][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-08 16:04:06.415][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-08 16:04:06.416][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-08 16:04:06.418][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-08 16:04:06.419][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-08 16:04:06.421][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-08 16:04:06.422][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-08 16:04:06.424][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-08 16:04:06.425][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-08 16:04:06.427][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-08 16:04:06.428][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-08 16:04:06.430][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-08 16:04:06.432][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-08 16:04:06.433][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-08 16:04:06.435][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-08 16:04:06.437][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:04:06.438][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.440][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:06.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:06.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:06.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:06.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:06.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:06.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:06.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:06.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.492][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:06.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:06.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:06.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:06.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:06.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:06.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:06.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:06.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:06.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:06.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:06.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:06.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:06.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:06.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:06.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:06.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:06.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:06.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:06.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:06.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:06.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:06.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:06.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:06.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:06.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:06.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:06.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:06.589][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-02-08 16:04:06.592][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-02-08 16:04:06.593][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.595][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-02-08 16:04:06.596][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.597][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:04:06.598][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.599][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.600][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.602][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.603][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-02-08 16:04:06.604][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:04:06.605][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.606][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-02-08 16:04:06.607][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:04:06.609][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-02-08 16:04:06.609][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-02-08 16:04:06.615][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:06.616][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:06.617][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-08 16:04:06.618][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:06.619][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:06.620][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:04:06.621][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:06.622][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:06.624][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.625][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-08 16:04:06.625][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-02-08 16:04:06.626][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:04:06.627][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:04:06.628][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.629][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:06.631][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-02-08 16:04:06.633][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.634][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-02-08 16:04:06.635][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.636][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:04:06.637][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.639][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.640][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.641][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.642][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:04:06.643][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:04:06.644][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.646][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-02-08 16:04:06.647][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:04:06.648][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-02-08 16:04:06.648][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-02-08 16:04:06.648][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-02-08 16:04:06.648][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-02-08 16:04:06.648][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-02-08 16:04:06.648][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-02-08 16:04:06.649][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:06.650][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:04:06.652][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-08 16:04:06.653][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:06.654][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:06.655][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:04:06.656][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:06.657][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:06.658][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.659][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:04:06.659][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:04:06.660][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:04:06.661][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:04:06.663][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.664][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:06.665][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-08 16:04:06.667][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:06.668][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-02-08 16:04:06.669][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.671][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:04:06.672][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.673][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.674][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.675][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.676][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:04:06.677][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:04:06.679][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.680][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-02-08 16:04:06.681][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:04:06.682][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-08 16:04:06.682][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:06.682][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:06.682][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:06.682][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:06.682][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:06.682][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:06.682][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:06.682][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:06.682][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:06.682][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-02-08 16:04:06.682][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:06.682][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:06.682][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:06.684][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:06.685][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:04:06.685][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:04:06.685][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:04:06.686][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-08 16:04:06.687][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:06.688][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:06.689][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:04:06.690][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:06.691][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:06.692][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.694][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:04:06.694][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:04:06.694][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-08 16:04:06.695][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:04:06.696][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:04:06.697][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.698][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-08 16:04:06.700][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-08 16:04:06.702][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.703][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-02-08 16:04:06.704][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.705][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:04:06.706][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.707][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.709][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.710][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.711][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:04:06.712][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:04:06.713][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.714][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-02-08 16:04:06.715][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:04:06.717][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-02-08 16:04:06.717][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-08 16:04:06.718][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:06.719][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:06.720][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-08 16:04:06.721][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:06.722][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:06.723][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:04:06.725][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:06.726][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:06.727][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:04:06.728][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:04:06.728][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:04:06.728][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-08 16:04:06.729][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:04:06.730][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:04:06.736][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:06.737][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-08 16:04:06.738][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-02-08 16:04:06.740][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-08 16:04:06.742][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-08 16:04:06.743][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-02-08 16:04:06.745][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-08 16:04:06.747][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-02-08 16:04:06.754][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2025-02-08 16:04:06.755][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2025-02-08 16:04:06.756][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2025-02-08 16:04:06.758][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2025-02-08 16:04:06.760][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:04:06.761][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:04:06.762][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2025-02-08 16:04:06.764][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:04:06.765][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:04:06.823][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2025-02-08 16:04:06.829][biodb::testThat]
biodb.INFO [2025-02-08 16:04:06.837][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-02-08 16:04:06.839][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:06.840][biodb::testThat]
biodb.TRACE[2025-02-08 16:04:06.852][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2025-02-08 16:04:06.854][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:04:06.857][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-08 16:04:06.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:06.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:06.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:06.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:06.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:06.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:06.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:06.884][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:06.886][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:06.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:06.888][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:06.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:06.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:06.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:06.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:06.895][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:06.896][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:06.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:06.899][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:06.901][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:06.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:06.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:06.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:06.906][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:06.907][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:06.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:06.909][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:06.912][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:06.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:06.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:06.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:06.916][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:06.918][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:06.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:06.920][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:06.922][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:06.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:06.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:06.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:06.927][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:06.928][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:06.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:06.930][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:06.933][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:06.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:06.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:06.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:06.938][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:06.939][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:06.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:06.941][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:06.944][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:06.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:06.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:06.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:06.954][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:06.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:06.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:06.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:06.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:06.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:06.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:06.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:06.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:06.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:06.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:06.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:06.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:06.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:06.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:06.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:06.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:06.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:06.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:06.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:07.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:07.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:07.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:07.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:07.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:07.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:07.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:07.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:07.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:07.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:07.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:07.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:07.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:07.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:07.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:07.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:07.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:07.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:07.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:07.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:07.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:07.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:07.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:07.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:07.043][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2025-02-08 16:04:07.046][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:07.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:07.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:07.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:07.050][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:07.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:07.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:07.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:07.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:07.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:07.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:07.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:07.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:07.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:07.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:07.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:07.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:07.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:07.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:07.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:07.069][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-08 16:04:07.095][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2025-02-08 16:04:07.096][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2025-02-08 16:04:07.097][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2025-02-08 16:04:07.118][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-02-08 16:04:07.119][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:04:07.120][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-02-08 16:04:07.131][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:04:07.133][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:04:07.134][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-02-08 16:04:07.135][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:04:07.137][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-02-08 16:04:07.138][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:04:07.139][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:04:07.150][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2025-02-08 16:04:07.152][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2025-02-08 16:04:07.153][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:04:07.157][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2025-02-08 16:04:07.159][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-08 16:04:07.160][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:04:07.161][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:04:07.162][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-08 16:04:07.164][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:04:07.165][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-08 16:04:07.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:07.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:07.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:07.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:07.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:07.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:07.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:07.181][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.DEBUG[2025-02-08 16:04:07.185][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:04:07.186][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:04:07.187][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.TRACE[2025-02-08 16:04:08.531][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1).
biodb.DEBUG[2025-02-08 16:04:09.842][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:04:09.847][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.content"
biodb.TRACE[2025-02-08 16:04:09.853][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.request"
biodb.TRACE[2025-02-08 16:04:09.856][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html"
biodb.DEBUG[2025-02-08 16:04:09.860][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:04:09.861][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:04:09.863][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-08 16:04:09.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:09.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:09.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:09.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:09.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:09.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:09.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:09.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:09.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:09.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:09.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:09.897][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:09.899][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:09.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:09.901][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:09.903][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:09.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:09.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:09.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:09.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:09.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:09.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:09.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:09.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:09.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:09.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:09.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:09.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:09.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:09.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:09.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:09.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:09.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:09.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:09.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:09.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:09.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:09.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:09.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:09.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:09.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:09.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:09.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:09.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:09.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:09.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:09.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:09.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:09.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:09.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:09.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:09.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:09.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:09.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:09.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:09.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:09.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:09.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:09.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:09.956][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2025-02-08 16:04:09.957][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:09.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:09.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:09.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:09.962][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:09.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:09.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:09.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:09.967][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:09.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:09.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:09.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:09.977][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:09.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:09.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:09.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:09.982][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:09.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:09.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:09.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:09.987][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:09.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:09.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:09.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:09.992][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:09.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:09.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:09.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:09.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:09.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:10.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:10.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:10.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:10.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:10.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:10.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:10.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:10.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:10.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:10.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:10.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:10.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:10.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:10.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:10.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:10.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:10.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.087][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:10.088][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.090][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:10.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.112][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:10.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:10.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.117][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:10.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:10.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.121][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:10.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:10.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.126][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:10.128][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:10.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.130][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.131][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:10.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:10.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.146][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:10.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:10.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.151][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:10.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:10.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.156][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:10.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:10.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.161][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:10.162][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:10.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.164][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.165][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:10.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:10.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.180][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:10.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:10.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.185][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:10.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:10.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.190][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:10.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:10.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.194][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:10.196][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:10.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.198][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.199][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:10.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:10.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:10.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:10.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:10.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:10.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:10.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:10.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.234][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:10.235][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:10.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.237][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:10.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:10.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.253][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:10.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:10.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.258][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:10.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:10.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.263][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:10.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:10.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.268][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:10.269][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:10.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.271][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.272][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:10.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:10.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.287][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:10.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:10.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.292][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:10.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:10.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.297][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:10.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:10.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.302][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:10.303][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:10.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.305][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.306][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:10.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:10.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.321][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:10.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:10.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.326][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:10.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:10.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.335][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:10.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:10.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.341][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:10.342][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:10.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.345][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.346][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:10.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:10.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.360][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:10.362][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:10.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.364][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.371][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:10.373][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:10.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.375][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.382][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:10.383][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.386][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.393][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:10.394][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:10.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.396][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.403][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:10.405][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:10.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.407][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.414][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:10.416][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:10.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.418][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.425][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:10.426][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:10.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.429][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.436][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:10.437][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:10.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.440][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.458][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2025-02-08 16:04:10.460][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:04:10.462][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-08 16:04:10.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:10.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:10.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:10.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:10.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:10.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:10.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:10.494][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:10.496][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.498][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:10.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.506][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:10.507][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:10.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.509][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.512][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:10.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:10.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.517][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:10.518][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:10.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.520][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.523][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:10.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:10.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.528][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:10.529][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:10.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.531][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.534][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:10.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:10.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.538][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:10.540][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:10.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.542][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.544][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:10.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:10.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.549][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:10.550][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:10.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.553][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.556][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:10.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:10.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:10.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:10.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:10.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:10.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:10.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:10.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:10.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:10.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:10.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:10.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:10.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:10.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:10.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:10.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:10.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:10.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:10.625][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2025-02-08 16:04:10.628][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:10.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:10.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.632][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:10.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:10.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:10.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:10.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:10.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:10.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:10.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:10.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:10.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:10.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:10.652][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-08 16:04:10.653][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2025-02-08 16:04:10.692][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:04:10.712][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2025-02-08 16:04:10.714][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-08 16:04:10.715][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:04:10.716][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:04:10.718][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-08 16:04:10.719][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:04:10.720][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-08 16:04:10.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:10.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:10.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:10.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:10.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:10.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:10.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:10.747][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2025-02-08 16:04:10.750][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:04:10.751][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:04:10.752][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2025-02-08 16:04:12.355][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2025-02-08 16:04:13.705][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:04:13.708][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2025-02-08 16:04:13.714][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2025-02-08 16:04:13.717][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2025-02-08 16:04:13.720][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:04:13.721][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:04:13.723][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-08 16:04:13.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:13.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:13.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:13.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:13.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:13.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:13.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:13.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:13.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:13.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.764][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:13.765][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:13.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.767][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.769][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:13.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:13.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:13.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:13.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:13.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:13.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:13.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:13.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:13.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:13.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:13.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:13.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:13.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:13.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:13.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:13.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:13.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:13.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:13.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:13.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:13.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:13.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:13.823][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2025-02-08 16:04:13.831][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:13.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:13.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.836][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:13.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:13.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.841][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:13.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:13.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.846][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:13.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:13.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.851][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:13.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:13.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.856][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:13.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:13.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.860][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:13.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:13.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:13.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:13.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:13.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:13.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:13.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:13.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:13.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:13.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:13.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:13.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:13.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:13.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:13.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:13.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:13.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:13.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:13.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:13.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:13.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:13.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:13.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:13.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:13.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:13.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:13.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:13.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:13.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:13.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.962][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:13.963][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:13.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.965][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:13.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:13.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.981][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:13.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:13.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.986][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:13.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:13.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:13.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:13.997][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:13.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:13.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.001][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:14.003][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:14.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.005][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.006][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:14.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:14.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.021][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:14.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:14.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.026][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:14.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:14.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.031][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:14.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:14.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.035][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:14.037][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:14.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.039][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.040][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:14.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:14.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.054][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.059][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.064][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.069][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.070][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.072][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.074][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.102][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.103][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.111][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.127][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:14.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:14.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.132][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:14.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:14.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.136][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:14.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:14.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.141][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:14.142][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:14.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.145][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.146][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:14.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:14.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.160][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:14.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:14.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:14.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:14.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:14.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:14.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.175][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:14.176][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:14.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.178][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.180][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:14.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:14.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.194][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:14.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:14.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.199][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:14.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:14.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.204][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:14.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:14.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.208][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:14.210][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:14.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.212][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.213][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:14.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:14.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.233][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:14.235][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:14.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.237][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.244][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:14.245][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:14.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.247][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.254][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.255][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.258][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.264][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:14.266][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:14.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.268][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.274][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:14.276][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:14.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.278][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.284][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:14.286][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:14.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.288][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.294][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.296][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.298][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.305][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.306][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.308][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.332][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2025-02-08 16:04:14.334][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:04:14.335][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-08 16:04:14.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:14.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:14.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:14.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:14.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:14.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:14.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:14.370][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.372][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.374][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.382][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:14.383][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:14.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.391][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.394][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:14.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:14.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.399][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:14.401][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:14.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.403][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.406][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:14.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:14.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.411][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:14.412][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:14.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.414][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.418][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:14.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:14.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.423][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:14.424][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:14.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.426][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.429][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:14.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:14.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.434][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.436][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.438][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.443][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:14.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:14.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:14.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:14.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:14.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:14.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:14.507][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2025-02-08 16:04:14.509][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:14.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:14.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.514][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:14.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:14.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.529][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:14.539][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-08 16:04:14.540][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2025-02-08 16:04:14.541][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:04:14.543][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2025-02-08 16:04:14.545][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:04:14.548][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2025-02-08 16:04:14.549][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:04:14.551][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:04:14.552][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-08 16:04:14.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:14.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:14.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:14.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:14.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:14.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:14.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:14.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.582][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:14.583][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:14.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.586][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.587][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:14.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:14.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:14.646][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2025-02-08 16:04:14.647][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:14.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:14.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.652][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:14.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:14.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.657][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:14.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:14.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.662][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:14.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:14.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.667][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:14.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:14.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.671][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:14.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:14.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.676][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:14.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:14.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:14.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:14.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:14.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:14.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:14.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:14.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:14.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:14.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.782][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.783][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.786][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:14.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:14.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.802][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:14.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:14.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.807][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:14.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:14.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.812][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:14.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:14.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.816][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:14.818][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:14.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.820][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.821][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:14.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:14.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.835][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:14.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:14.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.840][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:14.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:14.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.845][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:14.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:14.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.850][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:14.851][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:14.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.853][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.854][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:14.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:14.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.869][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.874][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.884][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.890][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.891][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.893][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.895][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:14.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.924][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.925][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.927][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.928][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:14.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.943][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:14.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:14.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.948][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:14.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:14.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.955][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:14.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:14.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.960][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:14.961][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:14.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.964][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.965][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:14.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:14.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.979][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:14.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:14.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:14.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:14.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:14.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:14.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.994][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:14.995][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:14.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:14.998][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:14.999][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:15.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:15.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.020][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:15.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:15.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.025][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:15.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:15.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.030][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:15.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:15.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.035][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:15.036][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:15.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.038][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.040][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:15.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:15.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.055][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:15.056][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:15.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.058][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.065][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:15.067][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:15.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.069][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.076][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:15.077][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:15.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.080][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.087][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:15.088][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:15.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.090][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.097][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:15.099][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:15.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.101][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.108][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:15.109][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:15.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.111][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.118][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:15.119][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:15.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.122][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.128][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:15.135][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:15.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.138][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.158][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2025-02-08 16:04:15.160][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:04:15.161][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-08 16:04:15.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:15.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:15.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:15.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:15.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:15.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:15.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:15.191][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:15.192][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:15.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.195][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:15.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:15.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.202][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:15.204][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:15.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.206][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.208][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:15.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:15.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.213][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:15.215][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:15.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.220][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:15.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:15.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.224][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:15.226][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:15.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.228][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.231][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:15.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:15.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.236][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:15.237][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:15.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.239][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.242][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:15.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:15.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.247][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:15.248][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:15.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.250][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.254][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:15.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:15.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:15.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:15.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:15.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:15.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:15.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:15.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:15.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:15.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:15.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:15.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:15.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:15.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:15.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:15.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:15.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:15.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:15.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:15.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:15.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:15.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:15.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:15.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:15.478][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2025-02-08 16:04:15.480][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:15.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:15.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.485][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:15.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:15.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:15.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:15.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:15.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:15.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:15.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:15.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:15.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:15.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:15.504][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-08 16:04:15.505][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2025-02-08 16:04:15.506][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:04:15.508][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2025-02-08 16:04:15.509][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-08 16:04:15.511][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:04:15.512][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:04:15.513][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-08 16:04:15.515][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:04:15.516][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-08 16:04:15.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:15.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:15.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:15.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:15.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:15.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:15.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:15.533][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2025-02-08 16:04:15.536][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:04:15.537][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:04:15.538][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2025-02-08 16:04:16.925][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2025-02-08 16:04:18.359][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:04:18.362][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2025-02-08 16:04:18.367][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2025-02-08 16:04:18.371][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2025-02-08 16:04:18.374][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:04:18.375][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:04:18.377][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-08 16:04:18.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:18.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:18.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:18.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:18.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:18.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:18.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:18.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:18.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:18.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.411][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:18.412][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:18.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.414][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.416][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:18.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:18.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:18.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:18.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:18.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:18.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:18.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:18.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:18.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:18.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:18.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:18.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:18.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:18.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:18.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:18.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:18.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:18.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:18.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:18.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:18.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:18.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:18.474][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2025-02-08 16:04:18.476][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:18.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:18.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.481][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:18.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:18.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.487][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:18.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:18.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.492][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:18.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:18.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.497][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:18.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:18.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.502][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:18.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:18.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.507][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:18.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:18.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:18.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:18.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.525][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:18.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:18.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:18.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:18.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:18.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:18.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:18.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:18.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:18.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:18.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:18.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:18.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:18.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:18.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:18.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:18.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:18.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:18.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:18.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:18.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:18.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:18.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:18.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:18.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:18.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:18.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.611][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:18.612][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:18.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.615][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:18.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:18.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.632][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:18.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:18.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.638][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:18.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:18.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.643][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:18.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:18.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.648][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:18.649][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:18.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.652][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.653][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:18.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:18.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.669][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:18.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:18.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.675][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:18.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:18.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.680][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:18.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:18.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.685][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:18.687][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:18.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.689][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.690][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:18.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:18.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.706][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:18.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:18.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.712][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:18.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:18.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.717][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:18.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:18.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.722][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:18.724][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:18.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.726][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.727][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:18.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:18.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:18.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:18.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:18.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:18.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.760][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:18.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:18.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.764][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:18.766][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:18.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.768][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:18.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:18.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.783][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:18.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:18.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.788][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:18.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:18.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.793][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:18.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:18.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.798][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:18.799][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:18.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.801][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.802][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:18.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:18.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.816][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:18.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:18.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:18.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:18.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.826][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:18.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:18.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.830][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:18.831][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:18.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.834][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.835][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:18.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:18.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.849][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:18.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:18.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.854][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:18.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:18.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.858][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:18.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:18.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.863][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:18.864][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:18.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.866][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.868][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:18.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:18.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.882][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:18.883][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:18.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.886][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.892][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:18.894][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:18.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.896][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.903][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:18.904][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:18.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.906][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.913][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:18.914][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:18.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.917][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.923][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:18.925][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:18.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.927][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.934][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:18.935][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:18.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.938][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.944][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:18.946][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:18.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.948][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.955][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:18.956][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:18.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:18.958][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:18.994][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2025-02-08 16:04:18.996][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:04:18.997][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-08 16:04:18.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:19.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:19.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:19.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:19.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:19.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:19.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:19.044][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:19.045][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:19.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.048][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:19.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:19.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.057][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:19.058][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:19.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.060][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.064][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:19.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:19.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.069][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:19.070][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:19.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.073][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.077][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:19.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:19.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.082][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:19.083][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:19.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.085][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.089][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:19.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:19.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.094][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:19.095][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:19.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.098][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.102][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:19.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:19.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.107][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:19.108][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:19.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.110][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.118][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:19.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:19.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:19.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:19.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:19.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:19.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:19.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:19.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:19.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:19.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:19.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:19.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:19.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:19.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:19.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:19.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:19.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:19.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:19.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:19.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:19.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:19.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:19.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:19.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:19.181][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2025-02-08 16:04:19.183][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:19.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:19.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.188][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:19.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:19.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:19.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:19.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:19.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:19.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:19.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:19.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:19.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:19.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:19.207][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-08 16:04:19.208][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2025-02-08 16:04:19.209][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:04:19.211][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2025-02-08 16:04:19.213][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-08 16:04:19.215][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:04:19.216][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:04:19.217][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-08 16:04:19.219][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:04:19.220][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-08 16:04:19.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:19.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:19.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:19.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:19.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:19.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:19.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:19.237][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2025-02-08 16:04:19.240][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:04:19.241][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:04:19.243][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2025-02-08 16:04:20.716][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2025-02-08 16:04:22.333][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:04:22.336][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2025-02-08 16:04:22.342][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2025-02-08 16:04:22.345][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2025-02-08 16:04:22.348][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:04:22.350][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:04:22.351][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-08 16:04:22.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:22.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:22.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:22.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:22.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:22.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:22.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:22.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.398][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:22.399][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:22.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.402][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.404][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:22.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:22.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:22.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:22.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:22.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:22.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:22.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:22.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:22.458][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2025-02-08 16:04:22.459][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:22.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:22.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.464][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:22.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:22.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.469][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:22.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:22.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.474][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:22.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:22.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.478][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:22.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:22.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.483][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:22.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:22.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.488][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:22.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:22.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:22.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:22.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:22.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:22.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:22.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:22.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:22.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:22.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.587][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.588][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.590][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.606][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:22.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:22.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.610][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:22.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:22.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.615][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:22.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:22.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.620][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:22.621][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:22.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.623][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.624][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:22.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:22.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.639][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:22.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:22.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.643][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:22.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:22.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.648][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:22.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:22.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.653][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:22.654][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:22.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.656][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.657][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:22.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:22.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.671][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:22.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:22.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.676][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:22.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:22.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.681][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:22.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:22.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.685][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:22.687][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:22.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.689][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.690][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:22.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:22.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:22.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:22.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:22.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:22.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:22.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:22.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.719][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:22.720][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:22.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.722][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:22.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:22.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.737][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:22.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:22.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.742][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:22.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:22.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.747][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:22.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:22.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.752][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:22.753][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:22.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.755][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.756][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:22.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:22.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.770][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:22.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:22.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:22.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:22.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.780][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:22.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:22.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.784][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:22.785][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:22.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.788][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.789][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:22.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:22.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.803][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:22.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:22.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.808][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:22.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:22.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.812][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:22.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:22.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.817][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:22.818][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:22.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.821][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.822][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:22.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:22.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.841][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:22.842][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:22.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.844][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.851][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:22.852][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:22.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.854][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.860][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.862][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.864][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.870][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:22.871][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:22.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.874][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.880][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:22.881][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:22.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.884][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.890][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:22.891][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:22.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.893][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.900][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:22.901][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:22.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.903][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.909][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:22.911][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:22.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.913][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.928][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2025-02-08 16:04:22.930][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:04:22.931][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-08 16:04:22.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:22.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:22.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:22.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:22.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:22.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:22.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:22.956][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.958][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.960][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:22.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:22.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.967][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:22.968][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:22.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.970][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.972][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:22.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:22.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.977][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:22.978][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:22.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.981][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.983][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:22.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:22.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.988][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:22.989][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:22.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.991][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.993][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:22.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:22.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:22.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:22.998][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:22.999][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:23.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:23.002][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:23.004][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:23.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:23.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:23.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:23.009][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:23.010][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:23.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:23.012][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:23.016][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:23.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:23.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:23.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:23.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:23.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:23.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:23.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:23.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:23.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:23.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:23.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:23.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:23.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:23.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:23.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:23.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:23.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:23.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:23.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:23.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:23.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:23.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:23.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:23.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:23.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:23.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:23.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:23.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:23.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:23.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:23.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:23.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:23.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:23.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:23.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:23.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:23.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:23.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:23.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:23.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:23.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:23.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:23.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:23.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:23.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:23.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:23.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:23.074][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2025-02-08 16:04:23.076][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:23.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:23.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:23.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:23.081][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:23.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:23.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:23.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:23.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:23.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:23.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:23.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:23.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:23.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:23.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:23.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:23.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:23.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:23.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:23.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:23.100][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-08 16:04:23.101][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2025-02-08 16:04:23.102][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:04:23.104][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2025-02-08 16:04:23.106][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-08 16:04:23.107][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:04:23.108][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:04:23.109][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-08 16:04:23.111][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:04:23.112][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-08 16:04:23.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:23.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:23.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:23.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:23.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:23.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:23.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:23.129][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2025-02-08 16:04:23.132][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:04:23.133][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:04:23.134][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2025-02-08 16:04:24.547][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2025-02-08 16:04:25.886][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:04:25.888][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2025-02-08 16:04:25.894][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2025-02-08 16:04:25.898][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2025-02-08 16:04:25.902][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:04:25.903][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:04:25.905][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-08 16:04:25.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:25.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:25.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:25.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:25.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:25.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:25.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:25.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:25.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:25.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:25.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:25.943][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:25.945][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:25.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:25.947][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:25.949][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:25.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:25.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:25.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:25.954][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:25.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:25.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:25.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:25.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:25.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:25.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:25.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:25.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:25.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:25.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:25.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:25.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:25.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:25.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:25.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:25.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:25.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:25.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:25.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:25.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:25.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:25.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:25.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:25.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:25.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:25.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:25.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:25.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:25.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:25.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:25.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:25.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:25.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:25.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:25.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:25.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:25.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:25.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:26.001][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2025-02-08 16:04:26.003][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:26.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:26.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.007][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:26.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:26.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.012][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:26.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:26.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.017][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:26.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:26.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.022][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:26.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:26.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.026][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:26.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:26.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.031][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:26.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:26.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:26.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:26.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:26.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:26.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:26.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:26.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:26.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:26.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.131][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.133][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.135][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.150][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:26.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:26.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.155][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:26.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:26.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.160][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:26.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:26.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.165][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:26.166][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:26.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.168][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.169][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:26.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:26.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.184][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:26.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:26.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.189][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:26.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:26.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.194][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:26.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:26.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.198][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:26.200][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:26.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.202][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.203][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:26.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:26.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.218][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:26.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:26.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.223][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:26.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:26.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.228][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:26.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:26.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.232][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:26.234][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:26.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.236][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.237][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:26.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:26.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:26.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:26.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:26.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:26.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:26.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:26.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.266][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:26.267][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:26.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.269][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:26.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:26.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.284][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:26.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:26.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.289][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:26.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:26.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.294][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:26.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:26.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.299][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:26.300][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:26.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.302][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.303][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:26.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:26.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.317][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:26.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:26.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:26.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:26.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:26.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:26.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.332][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:26.333][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:26.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.335][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.336][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:26.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:26.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.350][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:26.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:26.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.355][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:26.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:26.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.360][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:26.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:26.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.364][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:26.366][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:26.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.368][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.369][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:26.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:26.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.383][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:26.385][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:26.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.387][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.393][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:26.395][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:26.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.397][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.403][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.405][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.407][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.413][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:26.415][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:26.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.417][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.423][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:26.425][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:26.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.427][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.434][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:26.435][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:26.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.437][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.444][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:26.445][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:26.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.447][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.455][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:26.457][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:26.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.459][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.474][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2025-02-08 16:04:26.476][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:04:26.477][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-08 16:04:26.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:26.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:26.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:26.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:26.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:26.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:26.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:26.502][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.503][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.506][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.512][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:26.514][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:26.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.516][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.518][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:26.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:26.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.523][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:26.524][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:26.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.526][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.528][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:26.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:26.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.539][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:26.540][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:26.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.542][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.544][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:26.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:26.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.549][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:26.550][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:26.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.552][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.554][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:26.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:26.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.559][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:26.560][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:26.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.562][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.565][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:26.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:26.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:26.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:26.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:26.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:26.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:26.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:26.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.590][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:26.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:26.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:26.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:26.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:26.623][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2025-02-08 16:04:26.625][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:26.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:26.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.630][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:26.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:26.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:26.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:26.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:26.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:26.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:26.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:26.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:26.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:26.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:26.649][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-08 16:04:26.650][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2025-02-08 16:04:26.651][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:04:26.653][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2025-02-08 16:04:26.655][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-08 16:04:26.656][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:04:26.657][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:04:26.658][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-08 16:04:26.660][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:04:26.661][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-08 16:04:26.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:26.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:26.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:26.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:26.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:26.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:26.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:26.678][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2025-02-08 16:04:26.681][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:04:26.682][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:04:26.684][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2025-02-08 16:04:28.036][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2025-02-08 16:04:29.388][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:04:29.391][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2025-02-08 16:04:29.396][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2025-02-08 16:04:29.399][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2025-02-08 16:04:29.402][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:04:29.404][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:04:29.405][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-08 16:04:29.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:29.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:29.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:29.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:29.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:29.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:29.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:29.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.439][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:29.441][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:29.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.444][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.446][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:29.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:29.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:29.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:29.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:29.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:29.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.466][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:29.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:29.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:29.500][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2025-02-08 16:04:29.501][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:29.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:29.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.506][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:29.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:29.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.510][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:29.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:29.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.515][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:29.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:29.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.520][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:29.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:29.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.525][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:29.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:29.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.530][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:29.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:29.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:29.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:29.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:29.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:29.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:29.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:29.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:29.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:29.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.626][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.627][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.629][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.645][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:29.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:29.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.650][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:29.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:29.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.655][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:29.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:29.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.659][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:29.661][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:29.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.663][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.664][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:29.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:29.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.679][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:29.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:29.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.684][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:29.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:29.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.696][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:29.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:29.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.701][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:29.702][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:29.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.704][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.705][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:29.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:29.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.719][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:29.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:29.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.724][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:29.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:29.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.729][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:29.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:29.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.734][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:29.735][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:29.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.737][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.738][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:29.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:29.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:29.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:29.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:29.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:29.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:29.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:29.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.767][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:29.768][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:29.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.771][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:29.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:29.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.786][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:29.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:29.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.791][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:29.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:29.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.796][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:29.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:29.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.801][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:29.802][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:29.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.804][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.805][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:29.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:29.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:29.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:29.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:29.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:29.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:29.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:29.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.834][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:29.836][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:29.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.838][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:29.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:29.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.854][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:29.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:29.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.859][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:29.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:29.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.863][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:29.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:29.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.868][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:29.870][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:29.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.872][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.873][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:04:29.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:29.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.888][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:29.889][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:29.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.892][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.898][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:29.899][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:29.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.902][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.908][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.910][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.912][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.919][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:29.920][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:29.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.922][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.929][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:29.930][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:29.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.932][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.939][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:29.940][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:29.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.942][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.949][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:29.950][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:29.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.953][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.962][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:29.964][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:29.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.966][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.974][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2025-02-08 16:04:29.976][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:04:29.977][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-08 16:04:29.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:29.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:29.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:29.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:29.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:29.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:29.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:29.994][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:29.995][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:29.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:29.997][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:29.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:30.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:30.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.004][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:30.005][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:30.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.007][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.009][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:30.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:30.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.013][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:30.015][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:30.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.017][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.018][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:30.020][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:30.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.022][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.023][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:30.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:30.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.028][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:30.029][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:30.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.032][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.033][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:30.034][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:30.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.036][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:30.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:30.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.043][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:30.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:30.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:30.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:30.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:30.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:30.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:30.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:30.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:30.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:30.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:30.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:30.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:30.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:30.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:30.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:30.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:30.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:30.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:30.086][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2025-02-08 16:04:30.089][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:30.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:30.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.094][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:30.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:30.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:30.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:30.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.103][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:30.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:30.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.108][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:30.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:30.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.113][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:30.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:30.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.118][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:30.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:30.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:30.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:30.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:30.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:30.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:30.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:30.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:30.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:30.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:30.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:30.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:30.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:30.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:30.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:30.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:30.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:30.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:30.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:30.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:30.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:30.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:30.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:30.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:30.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:30.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:30.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:30.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:30.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:30.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.217][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:30.219][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:30.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.221][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:30.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:30.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.237][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:30.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:30.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.241][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:30.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:30.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.246][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:30.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:30.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.251][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:30.252][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:30.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.254][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.256][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:30.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:30.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.271][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:30.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:30.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.276][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:30.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:30.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.280][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:30.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:30.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.285][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:30.286][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:30.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.289][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.290][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:30.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:30.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.305][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:30.306][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:30.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.308][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.315][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:30.316][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:30.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.318][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:30.325][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:30.326][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:30.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:30.328][ef$get] fields variable is a list.
biodb.INFO [2025-02-08 16:04:30.340][biodb::testThat]
biodb.INFO [2025-02-08 16:04:30.341][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-08 16:04:30.343][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:30.344][biodb::testThat]
biodb.DEBUG[2025-02-08 16:04:30.347][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2025-02-08 16:04:30.348][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2025-02-08 16:04:30.350][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.INFO [2025-02-08 16:04:30.351][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8" for "ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8".
biodb.TRACE[2025-02-08 16:04:30.354][cch$loadFileContent] file.exist = [8]: "FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE".
biodb.TRACE[2025-02-08 16:04:30.355][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:04:30.356][conn$getEntryContent] 0 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:04:30.357][conn$getEntryContent] 8 entry content(s) need to be fetched from NCBI Gene database "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:04:30.359][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:04:30.360][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-08 16:04:30.361][private$retrieveContents] Get entry content(s) for 8 id(s)...
biodb.DEBUG[2025-02-08 16:04:30.368][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml".
biodb.DEBUG[2025-02-08 16:04:30.370][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:04:30.371][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:04:30.372][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml".
biodb.TRACE[2025-02-08 16:04:30.466][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml does not exist.
biodb.TRACE[2025-02-08 16:04:30.467][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:04:30.468][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:04:30.470][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml).
biodb.TRACE[2025-02-08 16:04:31.341][private$doSaveContentToFile] Saving to cache [8]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml"
biodb.DEBUG[2025-02-08 16:04:31.421][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:04:31.423][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2025-02-08 16:04:31.425][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2025-02-08 16:04:31.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:31.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:31.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:31.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:31.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:31.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:31.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:31.453][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.455][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.458][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.468][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:31.470][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:31.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.473][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.477][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:31.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:31.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.483][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:31.485][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:31.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.488][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.492][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:31.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:31.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.498][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:31.500][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:31.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.503][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.506][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:31.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:31.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.511][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:31.512][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:31.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.514][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.517][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:31.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:31.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.522][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:31.523][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:31.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.525][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.529][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:31.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:31.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:31.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:31.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:31.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:31.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:31.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:31.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:31.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:31.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:31.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:31.599][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.600][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.603][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.610][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:31.611][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:31.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.613][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.616][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:31.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:31.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.620][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:31.622][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:31.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.624][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.626][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:31.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:31.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.631][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:31.632][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:31.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.635][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.637][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:31.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:31.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.642][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:31.643][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:31.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.645][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.648][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:31.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:31.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.653][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:31.654][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:31.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.656][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.660][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:31.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:31.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:31.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:31.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:31.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:31.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:31.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:31.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:31.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:31.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:31.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:31.740][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.741][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.743][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.752][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:31.753][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:31.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.755][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.758][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:31.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:31.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.763][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:31.765][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:31.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.767][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.770][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:31.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:31.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.775][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:31.776][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:31.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.779][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.782][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:31.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:31.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.787][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:31.788][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:31.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.791][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.794][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:31.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:31.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.799][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:31.800][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:31.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.802][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.808][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:31.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:31.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:31.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:31.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.827][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:31.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:31.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:31.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:31.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:31.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:31.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:31.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:31.884][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.885][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.888][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.895][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:31.897][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:31.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.899][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.901][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:31.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:31.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.906][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:31.908][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:31.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.910][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.912][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:31.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:31.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.917][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:31.919][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:31.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.921][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.923][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:31.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:31.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.928][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:31.930][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:31.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.932][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.934][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:31.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:31.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.939][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:31.941][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:31.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.943][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.947][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:31.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:31.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:31.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:31.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:31.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:31.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:31.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:31.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:31.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:31.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:31.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:32.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:32.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:32.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:32.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:32.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:32.042][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.044][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.046][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.055][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:32.057][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:32.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.059][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.063][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:32.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:32.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.068][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:32.070][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:32.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.072][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.076][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:32.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:32.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.081][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:32.082][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:32.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.085][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.089][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:32.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:32.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.094][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:32.095][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:32.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.097][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.102][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:32.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:32.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.106][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:32.108][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:32.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.110][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.118][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:32.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:32.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.129][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:32.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:32.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:32.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:32.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:32.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:32.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:32.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:32.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:32.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:32.191][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.192][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.195][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.202][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:32.203][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:32.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.205][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.208][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:32.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:32.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.212][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:32.214][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:32.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.216][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.218][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:32.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:32.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.223][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:32.224][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:32.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.227][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.229][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:32.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:32.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.234][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:32.235][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:32.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.237][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.239][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:32.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:32.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.244][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:32.245][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:32.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.247][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.251][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:32.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:32.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:32.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:32.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:32.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:32.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:32.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:32.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:32.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:32.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:32.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:32.318][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.320][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.322][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.329][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:32.330][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:32.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.333][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.335][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:32.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:32.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.340][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:32.341][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:32.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.343][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.345][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:32.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:32.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.350][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:32.352][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:32.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.354][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.356][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:32.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:32.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.361][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:32.362][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:32.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.364][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.367][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:32.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:32.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.371][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:32.373][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:32.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.375][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.378][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:32.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:32.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:32.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:32.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.390][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.404][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:32.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:32.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:32.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:32.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:32.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:32.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:32.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:32.438][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.439][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.441][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.448][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:32.449][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:32.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.453][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.455][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:04:32.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:04:32.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.462][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:04:32.464][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:04:32.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.467][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.469][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:32.471][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:32.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.473][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.474][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:04:32.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:04:32.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.479][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:04:32.480][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:32.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.483][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.484][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:32.485][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:04:32.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.487][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:04:32.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:32.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:32.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:32.638][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2025-02-08 16:04:32.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:32.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:32.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:32.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:32.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:32.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:32.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:32.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:32.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:32.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:32.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:32.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:32.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:32.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:32.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:32.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:32.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:32.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:32.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:32.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:32.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:32.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:32.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:32.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:32.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:32.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:32.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:32.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:32.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:32.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:32.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:32.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:32.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:32.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:32.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:32.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:32.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:32.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:32.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:32.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:32.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:32.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:32.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:32.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:32.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:32.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:32.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:32.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:32.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:04:32.807][biodb::testThat]
biodb.INFO [2025-02-08 16:04:32.809][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-08 16:04:32.810][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:32.811][biodb::testThat]
biodb.TRACE[2025-02-08 16:04:32.814][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:32.816][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:32.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.818][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:32.820][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2025-02-08 16:04:32.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:32.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:32.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.842][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:32.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:32.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:32.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:32.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:32.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:32.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:32.854][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2025-02-08 16:04:32.860][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2025-02-08 16:04:32.864][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:04:32.865][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:04:32.867][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1".
biodb.TRACE[2025-02-08 16:04:32.943][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1 does not exist.
biodb.TRACE[2025-02-08 16:04:32.944][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:04:32.946][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:04:32.947][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1).
biodb.DEBUG[2025-02-08 16:04:33.009][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:04:33.012][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content"
biodb.TRACE[2025-02-08 16:04:33.017][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.request"
biodb.DEBUG[2025-02-08 16:04:33.019][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2025-02-08 16:04:33.042][biodb::testThat]
biodb.INFO [2025-02-08 16:04:33.044][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-02-08 16:04:33.045][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:33.046][biodb::testThat]
biodb.TRACE[2025-02-08 16:04:33.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:33.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:33.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:33.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:33.066][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:33.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:33.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:33.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:33.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:33.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:33.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:33.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:33.108][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2025-02-08 16:04:33.112][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:04:33.114][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2025-02-08 16:04:33.115][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:04:33.120][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2025-02-08 16:04:33.143][biodb::testThat]
biodb.INFO [2025-02-08 16:04:33.145][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-02-08 16:04:33.146][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:33.147][biodb::testThat]
biodb.TRACE[2025-02-08 16:04:33.160][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:33.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:33.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:33.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:33.165][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:33.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:33.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:33.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:33.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:33.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:33.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:33.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:33.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:33.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:33.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:33.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:33.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:33.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:33.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:33.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:33.184][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2025-02-08 16:04:33.185][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:33.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:33.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:33.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:33.190][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:33.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:33.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:33.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:33.195][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:33.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:33.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:33.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:33.199][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:33.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:33.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:33.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:33.204][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:33.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:33.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:33.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:33.209][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:33.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:33.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:33.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:33.214][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:33.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:33.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:33.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:33.220][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:33.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:33.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:33.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:33.225][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:33.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:33.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:33.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:33.230][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:33.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:33.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:33.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:33.234][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:33.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:33.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:33.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:33.239][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:33.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:33.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:33.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:33.244][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:33.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:33.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:33.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:04:33.256][biodb::testThat]
biodb.INFO [2025-02-08 16:04:33.258][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-08 16:04:33.259][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:33.260][biodb::testThat]
biodb.INFO [2025-02-08 16:04:33.274][biodb::testThat]
biodb.INFO [2025-02-08 16:04:33.275][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-08 16:04:33.277][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:33.278][biodb::testThat]
biodb.INFO [2025-02-08 16:04:33.288][biodb::testThat]
biodb.INFO [2025-02-08 16:04:33.289][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-08 16:04:33.291][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:33.292][biodb::testThat]
biodb.DEBUG[2025-02-08 16:04:33.296][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2025-02-08 16:04:40.762][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2025-02-08 16:04:50.913][biodb::testThat]
biodb.INFO [2025-02-08 16:04:50.914][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-08 16:04:50.915][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:50.916][biodb::testThat]
biodb.INFO [2025-02-08 16:04:50.926][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-08 16:04:50.927][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2025-02-08 16:04:50.928][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2025-02-08 16:04:50.930][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2025-02-08 16:04:50.937][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2025-02-08 16:04:50.938][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-08 16:04:50.939][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:50.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:50.941][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:50.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:50.943][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:50.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-08 16:04:50.950][biodb::testContext]
biodb.INFO [2025-02-08 16:04:50.951][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-08 16:04:50.952][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2025-02-08 16:04:50.953][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-08 16:04:50.954][biodb::testContext]
biodb.INFO [2025-02-08 16:04:50.957][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-08 16:04:50.959][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-08 16:04:50.964][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:04:50.966][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-08 16:04:50.967][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-08 16:04:50.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:50.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:50.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:50.971][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-08 16:04:50.972][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-08 16:04:50.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:50.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:50.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:50.977][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-08 16:04:50.978][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-08 16:04:50.979][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:50.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:50.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:50.982][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-08 16:04:50.983][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-08 16:04:50.985][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-08 16:04:50.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:50.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:50.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:50.989][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-08 16:04:50.990][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-08 16:04:50.991][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-08 16:04:50.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:50.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:50.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:50.996][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-08 16:04:50.997][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-08 16:04:50.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:50.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.001][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-08 16:04:51.002][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-08 16:04:51.004][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-08 16:04:51.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.008][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-08 16:04:51.009][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-08 16:04:51.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.013][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-08 16:04:51.015][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-08 16:04:51.016][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-08 16:04:51.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.020][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-08 16:04:51.021][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-08 16:04:51.023][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-08 16:04:51.024][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-08 16:04:51.025][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-08 16:04:51.026][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-08 16:04:51.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.030][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-08 16:04:51.032][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-08 16:04:51.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.036][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-08 16:04:51.037][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-08 16:04:51.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.041][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-08 16:04:51.043][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-08 16:04:51.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.047][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-08 16:04:51.048][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-08 16:04:51.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.053][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-08 16:04:51.054][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-08 16:04:51.055][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.058][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-08 16:04:51.059][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-08 16:04:51.063][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-08 16:04:51.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.067][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-08 16:04:51.068][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-08 16:04:51.069][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-08 16:04:51.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.074][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-08 16:04:51.076][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:51.077][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-08 16:04:51.078][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.080][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:04:51.081][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.082][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.083][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:51.084][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.086][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-08 16:04:51.087][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:04:51.088][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.089][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-08 16:04:51.090][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:04:51.092][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:51.093][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.094][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:04:51.094][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:04:51.094][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:04:51.094][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-08 16:04:51.094][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-08 16:04:51.095][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:04:51.096][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:51.098][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:51.099][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:04:51.100][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:51.101][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:51.102][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.103][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:51.105][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:04:51.106][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:04:51.107][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:51.108][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:51.109][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-08 16:04:51.111][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:51.112][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-08 16:04:51.114][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.115][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:04:51.116][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.117][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.118][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:51.120][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.130][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-08 16:04:51.131][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:04:51.133][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.134][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-08 16:04:51.136][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:04:51.137][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:51.138][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.139][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:04:51.139][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:04:51.139][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:04:51.139][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-08 16:04:51.139][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-08 16:04:51.140][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:04:51.142][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:51.143][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:51.144][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:04:51.145][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:51.146][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:51.147][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.148][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:51.149][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:04:51.150][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:04:51.151][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:51.153][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:51.154][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-08 16:04:51.156][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.157][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-08 16:04:51.158][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.159][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:04:51.160][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.161][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.163][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:51.164][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.165][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-08 16:04:51.166][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:04:51.167][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:51.168][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-08 16:04:51.170][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:04:51.171][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:51.172][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.173][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:51.174][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:04:51.175][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:51.176][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:51.177][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:04:51.178][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:51.179][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:51.181][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.182][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:51.183][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:04:51.184][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:04:51.185][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:51.186][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:51.187][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-08 16:04:51.189][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.190][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-08 16:04:51.192][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.193][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:04:51.194][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.195][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.196][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:51.197][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.199][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-08 16:04:51.200][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:04:51.201][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:51.202][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-08 16:04:51.203][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:04:51.204][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:51.206][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.207][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:51.208][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:04:51.209][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:51.210][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:51.211][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:04:51.212][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:51.213][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:51.214][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.216][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:51.217][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:04:51.218][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:04:51.219][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:51.220][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:51.222][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:04:51.223][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.273][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.316][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-08 16:04:51.317][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-08 16:04:51.319][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-08 16:04:51.320][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-08 16:04:51.322][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-08 16:04:51.323][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-08 16:04:51.325][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-08 16:04:51.326][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-08 16:04:51.328][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-08 16:04:51.329][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-08 16:04:51.331][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-08 16:04:51.332][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-08 16:04:51.334][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-08 16:04:51.335][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-08 16:04:51.337][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-08 16:04:51.338][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-08 16:04:51.340][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-08 16:04:51.342][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-08 16:04:51.343][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-08 16:04:51.345][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-08 16:04:51.346][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-08 16:04:51.348][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-08 16:04:51.349][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-08 16:04:51.351][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-08 16:04:51.352][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-08 16:04:51.354][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-08 16:04:51.355][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-08 16:04:51.357][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-08 16:04:51.358][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-08 16:04:51.360][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-08 16:04:51.361][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-08 16:04:51.363][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-08 16:04:51.364][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-08 16:04:51.366][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-08 16:04:51.367][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-08 16:04:51.369][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-08 16:04:51.370][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-08 16:04:51.372][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-08 16:04:51.373][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-08 16:04:51.375][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-08 16:04:51.376][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-08 16:04:51.378][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-08 16:04:51.380][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-08 16:04:51.381][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-08 16:04:51.383][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-08 16:04:51.384][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-08 16:04:51.386][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-08 16:04:51.387][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-08 16:04:51.389][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-08 16:04:51.390][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-08 16:04:51.392][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-08 16:04:51.393][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-08 16:04:51.395][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-08 16:04:51.396][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-08 16:04:51.398][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-08 16:04:51.399][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-08 16:04:51.401][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-08 16:04:51.403][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-08 16:04:51.404][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-08 16:04:51.406][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-08 16:04:51.407][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-08 16:04:51.409][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-08 16:04:51.410][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-08 16:04:51.412][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-08 16:04:51.413][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-08 16:04:51.415][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-08 16:04:51.416][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-08 16:04:51.418][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-08 16:04:51.419][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-08 16:04:51.421][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-08 16:04:51.422][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-08 16:04:51.424][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-08 16:04:51.425][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-08 16:04:51.427][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-08 16:04:51.428][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-08 16:04:51.430][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-08 16:04:51.431][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-08 16:04:51.433][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-08 16:04:51.435][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-08 16:04:51.436][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-08 16:04:51.438][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-08 16:04:51.439][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-08 16:04:51.441][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-08 16:04:51.442][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-08 16:04:51.445][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-08 16:04:51.447][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:04:51.448][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.452][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:51.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:51.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:51.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:51.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:51.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:51.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:51.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:51.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:51.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:51.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.500][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:51.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:51.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:51.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:51.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:51.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:51.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:51.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:51.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:51.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:51.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:51.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:51.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:51.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:51.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:51.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:51.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:51.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:51.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:51.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:51.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:51.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:51.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:04:51.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:51.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:51.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:51.597][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-02-08 16:04:51.599][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-02-08 16:04:51.601][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.602][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-02-08 16:04:51.603][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.604][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:04:51.606][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.607][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.608][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.609][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.610][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-02-08 16:04:51.611][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:04:51.613][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.614][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-02-08 16:04:51.615][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:04:51.616][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-02-08 16:04:51.616][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-02-08 16:04:51.617][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:51.618][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:51.620][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-08 16:04:51.621][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:51.622][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:51.623][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:04:51.624][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:51.625][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:51.626][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.627][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-08 16:04:51.627][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-02-08 16:04:51.629][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:04:51.630][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:04:51.631][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.632][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:51.633][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-02-08 16:04:51.635][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.636][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-02-08 16:04:51.638][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.639][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:04:51.640][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.641][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.642][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.643][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.645][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:04:51.646][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:04:51.647][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.648][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-02-08 16:04:51.649][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:04:51.650][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-02-08 16:04:51.650][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-02-08 16:04:51.650][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-02-08 16:04:51.650][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-02-08 16:04:51.650][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-02-08 16:04:51.650][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-02-08 16:04:51.652][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:51.653][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:04:51.654][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-08 16:04:51.655][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:51.656][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:51.657][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:04:51.658][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:51.660][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:51.661][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.662][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:04:51.662][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:04:51.663][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:04:51.664][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:04:51.665][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.666][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:51.668][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-08 16:04:51.670][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:51.671][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-02-08 16:04:51.672][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.674][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:04:51.675][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.676][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.677][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.678][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.679][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:04:51.681][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:04:51.682][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.683][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-02-08 16:04:51.684][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:04:51.685][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-08 16:04:51.685][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:51.685][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:51.685][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:51.685][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:51.685][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:51.685][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:51.685][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:51.685][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:51.685][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:51.685][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-02-08 16:04:51.685][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:51.685][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:51.685][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:04:51.687][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:51.688][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:04:51.688][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:04:51.688][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:04:51.689][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-08 16:04:51.690][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:51.691][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:51.692][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:04:51.694][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:51.695][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:51.696][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.697][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:04:51.697][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:04:51.697][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-08 16:04:51.698][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:04:51.699][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:04:51.700][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.701][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-08 16:04:51.703][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-08 16:04:51.705][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.706][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-02-08 16:04:51.707][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.708][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:04:51.710][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.711][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.712][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.713][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.714][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:04:51.715][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:04:51.716][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.718][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-02-08 16:04:51.719][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:04:51.720][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-02-08 16:04:51.720][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-08 16:04:51.721][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:04:51.722][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:04:51.723][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-08 16:04:51.725][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:51.726][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:51.727][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:04:51.728][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:04:51.729][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:04:51.730][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:04:51.731][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:04:51.731][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:04:51.731][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-08 16:04:51.732][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:04:51.733][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:04:51.735][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:04:51.736][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-08 16:04:51.737][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-02-08 16:04:51.739][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-08 16:04:51.741][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-08 16:04:51.742][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-02-08 16:04:51.744][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-08 16:04:51.745][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-02-08 16:04:51.752][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-08 16:04:51.753][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2025-02-08 16:04:51.755][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-08 16:04:51.757][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2025-02-08 16:04:51.758][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-08 16:04:51.759][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-08 16:04:51.761][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2025-02-08 16:04:51.762][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-08 16:04:51.763][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-08 16:04:51.765][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-08 16:04:51.770][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2025-02-08 16:04:51.775][biodb::testThat]
biodb.INFO [2025-02-08 16:04:51.776][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-02-08 16:04:51.778][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:51.779][biodb::testThat]
biodb.TRACE[2025-02-08 16:04:51.783][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2025-02-08 16:04:51.784][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:04:51.788][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:04:51.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:51.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:51.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:51.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:51.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:51.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:51.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:51.806][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:51.807][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:51.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.809][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:51.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:51.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.815][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:51.817][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:51.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.819][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:51.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:51.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.825][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:51.827][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:51.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.829][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:51.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:51.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.835][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:51.836][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:51.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.839][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:51.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:51.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.845][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:51.846][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:51.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.848][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:51.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:51.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.855][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:51.856][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:51.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.858][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:51.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:51.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.864][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:51.866][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:51.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.868][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.869][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:51.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:51.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.874][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:51.875][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:51.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.878][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.879][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:51.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:51.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.884][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:51.885][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:51.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.887][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:51.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:51.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.894][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:51.895][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:51.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.897][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:51.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:51.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.904][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:51.905][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:51.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.907][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.909][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:51.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:51.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.913][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:51.915][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:51.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.917][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:51.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:51.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.923][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:51.925][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:51.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.927][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.928][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:51.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:51.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.933][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:51.934][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:51.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.937][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:51.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:51.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.943][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:04:51.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:51.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:51.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:51.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:51.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:51.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.965][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:04:51.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:51.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:51.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:51.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:51.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:51.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.979][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:04:51.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:51.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:51.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:51.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:51.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:51.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.993][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:04:51.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:51.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:51.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:51.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:51.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:52.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:52.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:52.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.007][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:04:52.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:52.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:52.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:52.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:52.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:52.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:52.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:52.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:52.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:52.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:52.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:52.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:52.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:52.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:52.072][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2025-02-08 16:04:52.075][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:52.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:52.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.080][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:52.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:52.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:52.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:52.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.090][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:52.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:52.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.094][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:52.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:52.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.099][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:52.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:52.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.104][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:52.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:52.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:52.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:52.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:52.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:52.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:52.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:52.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:52.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:52.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.197][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.198][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.200][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.216][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:52.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:52.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:52.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:52.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:52.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:52.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.230][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:52.231][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:52.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.234][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.235][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:52.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:52.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:52.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:52.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:52.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:52.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:52.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:52.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.263][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:52.264][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:52.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.267][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:52.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:52.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.282][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:52.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:52.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.287][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:52.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:52.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:52.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:52.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.296][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:52.297][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:52.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.299][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.301][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:52.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:52.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.315][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:52.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:52.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.319][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:52.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:52.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.324][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:52.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:52.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.329][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:52.330][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:52.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.332][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.334][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:52.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:52.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.348][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:52.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:52.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.353][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:52.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:52.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.357][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:52.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:52.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.362][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:52.363][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:52.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.366][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:52.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:52.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:52.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:52.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:52.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:52.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.396][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:52.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:52.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.400][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:52.402][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:52.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.404][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:52.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:52.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:52.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:52.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:52.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:52.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:52.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:52.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.432][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:52.434][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:52.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.436][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:52.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:52.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:52.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:52.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:52.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:52.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:52.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:52.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.469][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:52.470][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:52.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.472][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:52.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:52.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:52.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:52.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:52.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:52.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:52.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:52.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.502][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:52.503][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:52.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.505][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:52.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:52.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:52.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:52.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:52.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:52.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:52.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:52.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.535][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:52.536][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:52.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.539][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:52.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:52.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:52.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:52.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:52.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:52.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:52.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:52.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.568][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:52.570][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:52.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.572][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:52.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:52.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:52.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:52.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:52.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:52.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:52.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:52.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.602][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:52.603][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:52.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.605][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.606][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:52.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:52.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:52.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:52.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:52.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:52.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:52.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:52.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.635][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:52.636][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:52.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.638][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:52.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:52.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:52.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:52.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:52.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:52.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:52.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:52.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.667][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:52.668][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:52.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.671][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:52.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:52.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.686][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.687][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.689][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.696][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:52.697][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:52.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.699][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.705][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:52.707][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:52.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.709][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.715][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:52.716][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:52.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.719][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.725][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:52.726][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:52.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.728][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.735][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:52.736][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:52.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.738][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.744][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:52.746][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:52.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.748][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.754][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:52.755][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:52.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.758][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.764][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:52.766][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:52.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.768][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.774][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:52.776][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:52.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.778][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.784][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:52.786][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:52.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.788][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.794][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:52.795][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:52.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.798][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.810][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:52.812][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:52.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.814][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.820][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:52.821][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:52.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.823][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.830][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:52.831][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:52.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.833][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.841][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2025-02-08 16:04:52.843][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:04:52.844][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:04:52.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:52.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:52.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:52.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:52.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:52.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:52.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:52.861][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.862][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.864][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:52.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:52.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.870][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:52.872][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:52.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.874][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:52.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:52.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.880][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:52.882][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:52.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.884][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:52.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:52.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.890][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:52.891][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:52.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.894][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:52.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:52.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.900][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:52.901][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:52.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.903][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:52.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:52.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.910][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:52.911][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:52.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.913][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:52.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:52.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.920][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:52.921][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:52.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.923][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.925][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:52.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:52.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.930][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:52.931][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:52.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.933][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.935][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:52.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:52.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.939][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:52.941][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:52.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.943][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:52.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:52.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.949][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:52.951][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:52.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.953][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:52.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:52.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.959][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:52.960][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:52.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.963][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.964][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:52.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:52.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.969][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:52.970][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:52.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.972][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:52.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:52.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.979][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:52.980][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:52.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.982][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:52.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:52.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.989][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:52.990][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:52.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.992][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:52.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:52.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:52.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:52.998][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:04:53.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:53.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:53.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:53.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:53.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:53.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.012][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:04:53.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:53.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:53.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:53.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:53.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:53.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.026][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:04:53.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:53.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:53.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:53.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:53.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:53.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.041][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:04:53.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:53.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:53.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:53.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:53.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:53.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.055][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:04:53.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:53.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:53.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:53.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:53.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:53.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.069][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:53.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:53.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:53.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:53.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:53.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:53.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:53.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:53.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:53.121][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2025-02-08 16:04:53.123][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:53.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:53.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.128][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:53.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:53.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:53.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:53.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.137][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:53.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:53.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.142][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:53.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:53.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.147][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:53.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:53.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.151][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:53.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:53.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:53.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:53.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:53.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:53.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:53.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:53.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:53.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.250][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.252][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.254][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:53.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:53.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:53.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:53.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:53.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:53.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.283][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:53.284][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:53.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.286][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:53.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:53.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:53.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:53.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:53.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:53.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:53.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:53.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.316][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:53.317][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:53.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.320][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:53.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:53.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:53.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:53.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.340][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:53.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:53.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.345][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:53.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:53.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.350][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:53.351][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:53.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.353][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:53.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:53.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.373][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:53.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:53.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.378][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:53.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:53.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.382][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:53.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:53.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.387][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:53.388][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:53.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.391][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.392][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:53.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:53.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.406][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:53.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:53.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.411][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:53.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:53.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.416][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:53.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:53.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.421][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:53.422][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:53.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.424][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.426][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:53.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:53.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:53.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:53.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:53.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:53.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:53.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:53.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.456][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:53.457][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:53.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.459][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.460][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:53.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:53.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:53.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:53.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:53.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:53.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:53.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:53.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.489][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:53.490][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:53.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.493][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:53.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:53.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:53.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:53.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:53.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:53.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:53.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:53.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.522][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:53.523][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:53.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.526][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:53.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:53.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:53.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:53.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:53.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:53.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:53.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:53.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.555][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:53.556][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:53.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.559][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:53.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:53.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:53.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:53.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:53.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:53.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:53.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:53.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.588][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:53.589][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:53.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.591][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:53.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:53.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:53.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:53.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:53.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:53.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:53.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:53.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.621][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:53.623][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:53.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.625][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:53.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:53.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:53.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:53.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:53.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:53.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:53.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:53.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.661][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:53.662][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:53.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.665][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:53.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:53.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:53.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:53.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:53.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:53.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:53.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:53.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.694][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:53.695][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:53.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.698][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:53.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:53.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:53.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:53.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:53.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:53.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.722][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:53.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:53.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.727][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:53.728][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:53.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.731][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:53.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:53.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.746][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.747][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.750][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.757][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:53.758][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:53.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.760][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.767][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:53.768][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:53.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.770][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.777][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:53.778][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:53.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.780][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.787][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:53.788][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:53.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.791][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.798][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:53.799][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:53.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.801][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.808][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:53.809][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:53.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.812][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.819][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:53.820][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:53.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.822][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:53.830][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:53.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.832][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.839][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:53.840][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:53.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.842][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.849][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:53.850][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:53.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.852][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.859][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:53.860][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:53.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.862][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.868][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:53.870][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:53.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.872][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.878][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:53.879][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:53.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.882][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.888][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:53.889][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:53.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.892][ef$get] fields variable is a list.
biodb.INFO [2025-02-08 16:04:53.903][biodb::testThat]
biodb.INFO [2025-02-08 16:04:53.904][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-08 16:04:53.906][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:53.907][biodb::testThat]
biodb.DEBUG[2025-02-08 16:04:53.910][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2025-02-08 16:04:53.911][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-08 16:04:53.915][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2025-02-08 16:04:53.918][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2025-02-08 16:04:53.949][loadFileContents] Loaded 2 files from cache: [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2025-02-08 16:04:53.951][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:04:53.953][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-08 16:04:53.955][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:04:53.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:53.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:53.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:53.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:53.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:53.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:53.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:53.972][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.974][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.976][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:53.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:53.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.982][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:53.984][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:53.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.986][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:53.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:53.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.992][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:53.994][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:53.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:53.996][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:53.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:53.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:54.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.002][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:54.004][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:54.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.006][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:54.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:54.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.012][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:54.014][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:54.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.016][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:54.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:54.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.022][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:54.024][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:54.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.026][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:54.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:54.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.032][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:54.033][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:54.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.036][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.037][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:54.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:54.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.042][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:54.043][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:54.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.046][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.047][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:54.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:54.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.052][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:54.053][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:54.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.055][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:54.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:54.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.062][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:54.063][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:54.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.065][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:54.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:54.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.072][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:54.073][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:54.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.075][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.077][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:54.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:54.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.082][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:54.083][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:54.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.085][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:54.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:54.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.091][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:54.093][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:54.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.095][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:54.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:54.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.101][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:54.102][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:54.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.105][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.106][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:54.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:54.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.111][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:04:54.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:54.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:54.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:54.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:54.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:54.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.131][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:04:54.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:54.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:54.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:54.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:54.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:54.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.145][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:04:54.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:54.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:54.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:54.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:54.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:54.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.159][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:04:54.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:54.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:54.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:54.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:54.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:54.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.173][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:04:54.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:54.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:54.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:54.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:54.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:54.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:54.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:54.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:54.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:54.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:54.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:54.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:54.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:54.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:54.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:54.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:54.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:54.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:54.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:54.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:54.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:54.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:54.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:54.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:54.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:54.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:54.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:54.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:54.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:54.240][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:54.242][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:54.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.244][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:54.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:54.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.250][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:54.251][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:54.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.254][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:54.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:54.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.260][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:54.262][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:54.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.264][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:54.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:54.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.270][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:54.272][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:54.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.274][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:54.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:54.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.280][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:54.282][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:54.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.284][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:54.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:54.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.290][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:54.291][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:54.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.294][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:54.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:54.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.300][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:54.301][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:54.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.304][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.305][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:54.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:54.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.310][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:54.311][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:54.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.314][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.315][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:54.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:54.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.320][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:54.321][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:54.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.323][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:54.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:54.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.330][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:54.331][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:54.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.333][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:54.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:54.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.340][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:54.341][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:54.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.343][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.345][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:54.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:54.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.350][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:54.351][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:54.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.353][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:54.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:54.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.360][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:54.361][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:54.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.363][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:54.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:54.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.369][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:54.371][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:54.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.373][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:54.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:54.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.379][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:04:54.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:54.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:54.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:54.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:54.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:54.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.394][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:04:54.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:54.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:54.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:54.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:54.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:54.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.408][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:04:54.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:54.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:54.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:54.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:54.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:54.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.422][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:04:54.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:54.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:54.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:54.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:54.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:54.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.436][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:04:54.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:54.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:54.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:54.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:54.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:54.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.450][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:54.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:54.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:54.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:54.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:54.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:54.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:54.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:54.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:54.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:54.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:54.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:54.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:54.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:54.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:54.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:54.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:54.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:54.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:54.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:54.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:54.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:54.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:54.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:54.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:54.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:54.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:54.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:54.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:54.517][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2025-02-08 16:04:54.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:54.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:54.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:54.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:54.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:54.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:54.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:54.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:04:54.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:54.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:04:54.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:54.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:04:54.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:04:54.569][biodb::testThat]
biodb.INFO [2025-02-08 16:04:54.570][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-08 16:04:54.572][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:54.573][biodb::testThat]
biodb.TRACE[2025-02-08 16:04:54.576][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:54.577][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:54.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.579][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:54.581][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2025-02-08 16:04:54.598][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:54.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:54.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.603][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:54.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:54.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.608][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:54.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:54.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:54.615][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2025-02-08 16:04:54.622][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-02-08 16:04:54.626][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:04:54.627][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-02-08 16:04:54.629][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:04:54.644][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2025-02-08 16:04:54.647][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2025-02-08 16:04:54.664][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:54.666][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:54.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.668][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.669][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:54.671][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:54.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.673][ef$get] fields variable is a list.
biodb.INFO [2025-02-08 16:04:54.679][biodb::testThat]
biodb.INFO [2025-02-08 16:04:54.681][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-02-08 16:04:54.682][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:54.683][biodb::testThat]
biodb.TRACE[2025-02-08 16:04:54.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:54.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:54.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:54.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:54.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:54.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:54.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:54.739][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-02-08 16:04:54.743][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:04:54.745][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-02-08 16:04:54.746][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:04:54.749][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2025-02-08 16:04:54.772][biodb::testThat]
biodb.INFO [2025-02-08 16:04:54.773][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-02-08 16:04:54.774][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:54.775][biodb::testThat]
biodb.TRACE[2025-02-08 16:04:54.788][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:54.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:54.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.792][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:54.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:54.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:54.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:54.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.802][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:54.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:54.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.807][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:54.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:54.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.811][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:54.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:54.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.816][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:54.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:54.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.822][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:54.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:54.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.827][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:04:54.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:04:54.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:54.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:04:54.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.837][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:54.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:54.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.841][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:04:54.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:04:54.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.846][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:54.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:04:54.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:54.851][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:54.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:04:54.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:54.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:04:54.864][biodb::testThat]
biodb.INFO [2025-02-08 16:04:54.865][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-08 16:04:54.866][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:54.867][biodb::testThat]
biodb.INFO [2025-02-08 16:04:54.878][biodb::testThat]
biodb.INFO [2025-02-08 16:04:54.879][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-08 16:04:54.880][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:54.881][biodb::testThat]
biodb.INFO [2025-02-08 16:04:54.893][biodb::testThat]
biodb.INFO [2025-02-08 16:04:54.894][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-08 16:04:54.895][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:54.896][biodb::testThat]
biodb.DEBUG[2025-02-08 16:04:54.900][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2025-02-08 16:04:55.071][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2025-02-08 16:04:55.231][biodb::testThat]
biodb.INFO [2025-02-08 16:04:55.232][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-08 16:04:55.233][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:55.234][biodb::testThat]
biodb.DEBUG[2025-02-08 16:04:55.309][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2025-02-08 16:04:55.380][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:55.381][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:55.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:55.384][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:55.385][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:55.386][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:55.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:55.389][ef$get] fields variable is a list.
biodb.INFO [2025-02-08 16:04:55.391][biodb::testThat]
biodb.INFO [2025-02-08 16:04:55.392][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-02-08 16:04:55.393][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:55.394][biodb::testThat]
biodb.TRACE[2025-02-08 16:04:55.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:55.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:55.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:55.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:55.414][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:55.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:55.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:55.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:55.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:55.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:55.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:55.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:55.562][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-02-08 16:04:55.566][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:04:55.567][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-02-08 16:04:55.569][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:04:55.571][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2025-02-08 16:04:55.642][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-02-08 16:04:55.646][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:04:55.647][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-02-08 16:04:55.649][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:04:55.651][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2025-02-08 16:04:55.670][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:04:55.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:04:55.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:55.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:55.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:55.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:55.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:55.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:55.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:55.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:55.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:55.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:55.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:55.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:55.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:55.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:55.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:55.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:55.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:55.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:55.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:55.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:55.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:55.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:55.713][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:04:55.716][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:04:55.718][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-08 16:04:55.719][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:04:55.736][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-08 16:04:55.755][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-02-08 16:04:55.759][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:04:55.760][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2025-02-08 16:04:55.762][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:04:55.792][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2025-02-08 16:04:56.087][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-02-08 16:04:56.090][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:04:56.092][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2025-02-08 16:04:56.094][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:04:56.109][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2025-02-08 16:04:56.138][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-02-08 16:04:56.142][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:04:56.143][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2025-02-08 16:04:56.145][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:04:56.160][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2025-02-08 16:04:56.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:56.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:56.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:56.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:56.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:56.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:56.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:56.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:56.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:56.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:56.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:56.213][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:04:56.217][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:04:56.218][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2025-02-08 16:04:56.220][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:04:56.235][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2025-02-08 16:04:56.254][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-02-08 16:04:56.258][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:04:56.259][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2025-02-08 16:04:56.261][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:04:56.278][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2025-02-08 16:04:56.299][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-02-08 16:04:56.303][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:04:56.304][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2025-02-08 16:04:56.306][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:04:56.322][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2025-02-08 16:04:56.351][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-02-08 16:04:56.354][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:04:56.356][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2025-02-08 16:04:56.358][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:04:56.362][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2025-02-08 16:04:56.386][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:04:56.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:04:56.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:04:56.402][biodb::testThat]
biodb.INFO [2025-02-08 16:04:56.404][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-02-08 16:04:56.405][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:04:56.406][biodb::testThat]
biodb.TRACE[2025-02-08 16:04:56.410][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:04:56.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:04:56.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.414][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:04:56.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:04:56.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:56.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:56.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:56.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:56.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:56.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:56.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:56.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:56.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:56.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:56.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:56.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:56.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:56.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:56.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:56.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:56.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:56.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:56.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:56.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:56.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:56.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:56.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:56.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:56.480][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:04:56.483][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:04:56.485][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-08 16:04:56.487][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:04:56.489][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-08 16:04:56.491][private$loadEntries] Creating entries from ids [3]: "172631573, 172608227, 172593299".
biodb.DEBUG[2025-02-08 16:04:56.492][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-08 16:04:56.494][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172631573, 172608227, 172593299".
biodb.TRACE[2025-02-08 16:04:56.496][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2025-02-08 16:04:56.541][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172631573.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172608227.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172593299.xml".
biodb.DEBUG[2025-02-08 16:04:56.543][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:04:56.545][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-08 16:04:56.547][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:04:56.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:56.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:56.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:56.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:56.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:56.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:56.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:56.564][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:56.565][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:56.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.568][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:56.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:56.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.574][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:56.575][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:56.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.577][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:56.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:56.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.584][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:56.585][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:56.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.588][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:56.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:56.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.594][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:56.595][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:56.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.598][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:56.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:56.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.604][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:56.606][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:56.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.608][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:56.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:56.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.614][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:56.616][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:56.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.618][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:56.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:56.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.632][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:56.634][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:56.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.636][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.638][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:56.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:56.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.643][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:56.644][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:56.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.646][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.648][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:56.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:56.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.653][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:56.654][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:56.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.656][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:56.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:56.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.662][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:56.664][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:56.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.666][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:56.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:56.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.672][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:56.673][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:56.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.676][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.677][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:56.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:56.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.682][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:56.683][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:56.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.685][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:56.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:56.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.692][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:56.693][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:56.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.695][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.697][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:56.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:56.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.702][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:56.703][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:56.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.705][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.707][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:56.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:56.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.712][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:04:56.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:56.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:56.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:56.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:56.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:56.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.726][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:04:56.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:56.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:56.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:56.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:56.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:56.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.740][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:04:56.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:56.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:56.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:56.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:56.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:56.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.754][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:04:56.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:56.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:56.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:56.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:56.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:56.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.768][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:04:56.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:56.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:56.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:56.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:56.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:56.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.782][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:56.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:56.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:56.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:56.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:56.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:56.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:56.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:56.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:56.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:56.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:56.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:56.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:56.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:56.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:56.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:56.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:56.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:56.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:56.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:56.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:56.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:56.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:56.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:56.836][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:56.837][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:56.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.839][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:56.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:56.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.846][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:56.847][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:56.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.849][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:56.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:56.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.856][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:56.857][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:56.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.859][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:56.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:56.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.866][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:56.867][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:56.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.869][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:56.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:56.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.876][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:56.877][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:56.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.879][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:56.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:56.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.886][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:56.887][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:56.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.889][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:56.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:56.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.896][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:56.897][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:56.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.899][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.901][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:56.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:56.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.905][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:56.907][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:56.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.909][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.911][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:56.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:56.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.915][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:56.917][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:56.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.919][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:56.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:56.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.925][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:56.927][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:56.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.929][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:56.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:56.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.935][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:56.936][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:56.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.939][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.940][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:56.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:56.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.945][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:56.946][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:56.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.949][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:56.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:56.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.955][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:56.956][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:56.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.959][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.960][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:56.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:56.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.965][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:56.966][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:56.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.969][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.970][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:56.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:56.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.975][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:04:56.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:56.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:56.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:56.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:56.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:56.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.989][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:04:56.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:56.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:56.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:56.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:56.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:56.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:57.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:57.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.004][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:04:57.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:57.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:57.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:57.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:57.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:57.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.018][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:04:57.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:57.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:57.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:57.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:57.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:57.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.039][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:04:57.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:57.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:57.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:57.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:57.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:57.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:57.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:57.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:57.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:57.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:57.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:57.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:57.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:57.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:57.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:57.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:57.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:57.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:57.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:57.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:57.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:57.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:57.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:57.106][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:57.108][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:57.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.110][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:57.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:57.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.116][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:57.117][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:57.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.120][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:57.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:57.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.126][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:57.127][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:57.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.129][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:57.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:57.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.136][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:57.137][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:57.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.139][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:57.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:57.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.146][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:57.147][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:57.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.149][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:57.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:57.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.155][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:57.157][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:57.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.159][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:57.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:57.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.165][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:57.167][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:57.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.169][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.170][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:57.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:57.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.175][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:57.177][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:57.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.179][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.180][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:57.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:57.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.185][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:57.187][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:57.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.189][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:57.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:57.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.195][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:57.196][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:57.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.199][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:57.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:57.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.205][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:57.206][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:57.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.209][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.210][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:57.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:57.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.215][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:57.216][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:57.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.219][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:57.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:57.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.225][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:57.226][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:57.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.228][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.230][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:57.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:57.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.235][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:57.236][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:57.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.238][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:57.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:57.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.245][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:04:57.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:57.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:57.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:57.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:57.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:57.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.259][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:04:57.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:57.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:57.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:57.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:57.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:57.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.273][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:04:57.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:57.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:57.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:57.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:57.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:57.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.288][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:04:57.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:57.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:57.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:57.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:57.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:57.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.302][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:04:57.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:57.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:57.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:57.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:57.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:57.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:57.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:57.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:57.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:57.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:57.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:57.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:57.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:57.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:57.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:57.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:57.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:57.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:57.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:57.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:57.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:57.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:57.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:57.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:57.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:57.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:57.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:57.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:57.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:57.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:57.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:57.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:57.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:57.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:57.397][self$createEntryFromContent] Accession numbers: 172631573, 172608227, 172593299.
biodb.DEBUG[2025-02-08 16:04:57.398][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:04:57.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:57.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:57.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:57.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:57.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:57.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:57.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:57.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.424][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:57.425][private$selectFields]
biodb.TRACE[2025-02-08 16:04:57.426][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:04:57.427][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:04:57.428][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:57.429][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.431][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.440][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.441][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.443][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.445][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.446][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:57.448][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:57.449][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.450][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.452][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.454][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:04:57.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.476][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-08 16:04:57.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:57.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:57.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:57.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:57.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:57.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:57.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:57.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.501][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:57.502][private$selectFields]
biodb.TRACE[2025-02-08 16:04:57.503][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:04:57.505][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:04:57.506][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:57.507][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.508][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.510][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.512][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.513][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.515][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.516][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:57.517][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:57.519][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.520][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.522][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.523][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:04:57.525][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.529][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.539][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-02-08 16:04:57.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:57.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:57.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:57.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:57.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:57.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:57.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:57.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.564][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:57.565][private$selectFields]
biodb.TRACE[2025-02-08 16:04:57.566][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:04:57.567][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:04:57.568][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:57.569][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.571][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.573][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.574][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.575][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.578][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.579][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:57.580][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:57.581][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.582][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.585][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.586][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:04:57.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:57.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:57.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:57.602][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172593299].
biodb.DEBUG[2025-02-08 16:04:57.603][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:04:57.604][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:04:57.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:57.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:57.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:57.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:57.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:57.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:57.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:57.626][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:04:57.630][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:04:57.631][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:04:57.633][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-08 16:04:57.701][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:04:57.702][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:04:57.704][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:04:57.705][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:04:57.774][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:04:57.777][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2025-02-08 16:04:57.781][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2025-02-08 16:04:57.784][private$loadEntries] Creating entries from ids [3]: "172642450, 172529292, 172529260".
biodb.DEBUG[2025-02-08 16:04:57.785][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-08 16:04:57.787][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172642450, 172529292, 172529260".
biodb.TRACE[2025-02-08 16:04:57.789][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-02-08 16:04:57.790][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:04:57.791][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:04:57.793][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:04:57.794][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:04:57.795][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-08 16:04:57.796][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-02-08 16:04:57.798][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172642450,172529292,172529260/XML".
biodb.DEBUG[2025-02-08 16:04:57.801][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:04:57.802][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:04:57.803][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172642450,172529292,172529260/XML".
biodb.TRACE[2025-02-08 16:04:58.111][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172642450,172529292,172529260/XML).
biodb.TRACE[2025-02-08 16:04:58.388][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172642450.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172529292.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172529260.xml"
biodb.DEBUG[2025-02-08 16:04:58.393][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:04:58.394][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-08 16:04:58.396][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:04:58.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:58.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:58.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:58.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:58.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:58.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:58.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:58.413][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:58.414][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:58.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.416][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:58.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:58.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.422][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.424][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.426][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.432][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.433][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.436][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.442][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.443][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.445][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.454][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.455][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.457][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.463][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:58.465][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:58.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.467][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:58.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:58.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.473][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:58.474][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:58.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.477][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.478][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:58.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:58.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.483][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:58.484][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:58.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.486][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.488][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:58.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:58.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.493][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:58.494][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:58.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.496][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:58.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:58.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.502][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:58.504][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:58.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.506][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:58.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:58.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.512][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:58.513][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:58.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.516][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.517][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:58.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:58.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.522][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:58.523][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:58.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.525][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:58.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:58.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.532][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:58.533][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:58.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.535][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.537][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:58.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:58.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.541][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:58.543][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:58.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.545][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.546][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:58.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:58.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.562][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:04:58.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.576][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:04:58.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.589][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:04:58.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:58.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:58.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:58.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:58.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:58.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.603][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:04:58.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.617][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:04:58.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.631][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:58.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:58.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:58.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:58.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:58.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:58.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:58.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:58.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:58.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:58.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:58.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:58.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:58.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:58.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:58.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:58.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:58.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:58.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:58.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:58.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:58.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:58.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:58.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:58.684][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:58.686][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:58.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.688][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:58.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:58.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.694][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.695][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.698][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.704][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.705][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.707][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.714][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.715][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.717][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.723][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.725][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.727][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.733][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:58.734][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:58.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.737][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:58.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:58.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.743][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:58.744][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:58.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.746][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.748][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:58.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:58.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.752][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:58.754][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:58.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.756][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.757][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:58.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:58.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.762][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:58.763][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:58.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.766][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:58.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:58.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.772][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:58.773][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:58.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.775][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:58.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:58.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.781][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:58.783][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:58.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.785][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.786][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:58.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:58.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.791][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:58.792][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:58.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.794][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:58.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:58.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.801][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:58.802][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:58.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.804][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:58.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:58.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.810][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:58.812][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:58.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.814][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:58.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:58.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.820][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:04:58.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.834][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:04:58.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.848][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:04:58.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:58.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:58.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:58.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:58.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:58.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.862][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:04:58.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.876][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:04:58.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:58.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:58.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:58.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:58.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:58.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:58.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:58.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:58.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:58.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:58.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:58.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:58.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:58.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:58.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:58.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:58.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:58.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:58.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:58.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:58.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:58.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:58.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:58.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:58.943][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:58.945][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:58.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.954][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:58.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:58.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.961][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.962][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.964][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:58.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.971][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.972][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.974][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:58.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.980][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.982][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.984][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:58.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.990][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.991][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.993][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:58.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:58.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:58.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.000][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:59.001][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:59.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.003][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:59.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:59.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.009][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:59.011][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:59.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.013][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.014][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:59.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:59.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.019][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:59.021][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:59.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.023][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.024][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:59.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:59.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.029][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:59.030][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:59.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.032][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:59.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:59.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.039][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:59.040][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:59.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.042][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:59.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:59.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.048][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:59.050][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:59.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.052][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.053][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:59.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:59.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.058][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:59.059][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:59.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.062][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:59.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:59.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.068][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:59.069][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:59.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.071][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:59.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:59.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.078][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:59.079][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:59.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.081][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.083][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:59.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:59.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.088][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:04:59.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:59.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:59.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:59.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:59.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:59.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.102][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:04:59.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:59.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:59.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:59.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:59.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:59.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.116][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:04:59.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:59.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:59.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:59.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:59.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:59.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.130][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:04:59.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:59.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:59.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:59.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:59.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:59.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.144][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:04:59.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:59.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:59.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:59.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:59.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:59.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:59.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:59.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:59.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:59.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:59.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:59.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:59.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:59.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:59.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:59.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:59.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:59.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:59.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:59.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:59.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:59.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:59.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:59.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:59.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:59.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:59.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:59.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:59.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:59.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:59.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:59.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:59.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:59.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:59.237][self$createEntryFromContent] Accession numbers: 172642450, 172529292, 172529260.
biodb.DEBUG[2025-02-08 16:04:59.258][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:04:59.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:59.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:59.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:59.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:59.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:59.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:59.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:59.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.302][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:59.303][private$selectFields]
biodb.TRACE[2025-02-08 16:04:59.304][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:04:59.305][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:04:59.307][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:59.308][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.309][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.318][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.320][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.321][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.323][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.324][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:59.325][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:59.326][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.328][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.330][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.331][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:04:59.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.346][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:04:59.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:59.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:59.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:59.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:59.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:59.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:59.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:59.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.370][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:59.371][private$selectFields]
biodb.TRACE[2025-02-08 16:04:59.372][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:04:59.374][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:04:59.375][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:59.376][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.377][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.379][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.380][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.382][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.384][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.385][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:59.386][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:59.387][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.389][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.391][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.392][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:04:59.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.407][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2025-02-08 16:04:59.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:59.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:59.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:59.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:59.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:59.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:59.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:59.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.432][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:59.433][private$selectFields]
biodb.TRACE[2025-02-08 16:04:59.434][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:04:59.435][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:04:59.436][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:59.437][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.439][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.441][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.442][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.443][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.446][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.447][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:59.448][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:04:59.449][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.451][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.455][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.456][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:04:59.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.472][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2025-02-08 16:04:59.473][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:04:59.474][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-08 16:04:59.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:59.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:59.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:59.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:59.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:59.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:59.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:59.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:59.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:59.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:59.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:59.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:59.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:59.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:59.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:59.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:59.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:59.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:59.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:59.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:59.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:59.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:59.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:59.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:04:59.586][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:04:59.590][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:04:59.591][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-08 16:04:59.593][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:04:59.609][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-08 16:04:59.611][private$loadEntries] Creating entries from ids [3]: "172623142, 172622621, 172602027".
biodb.DEBUG[2025-02-08 16:04:59.613][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-08 16:04:59.615][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172623142, 172622621, 172602027".
biodb.TRACE[2025-02-08 16:04:59.616][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2025-02-08 16:04:59.662][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172623142.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172622621.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172602027.xml".
biodb.DEBUG[2025-02-08 16:04:59.664][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:04:59.666][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-08 16:04:59.668][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:04:59.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:59.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:59.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:59.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:59.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:59.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:59.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:59.686][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:59.687][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:59.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.689][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:59.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:59.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.695][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:59.697][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:59.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.699][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:59.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:59.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.705][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:59.706][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:59.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.709][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:59.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:59.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.715][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:59.716][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:59.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.718][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:59.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:59.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.725][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:59.726][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:59.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.728][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:59.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:59.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.735][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:59.736][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:59.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.745][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:59.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:59.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.752][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:59.753][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:59.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.755][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.757][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:04:59.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:04:59.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.762][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:59.763][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:59.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.765][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.767][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:04:59.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:04:59.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.771][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:59.773][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:59.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.775][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:04:59.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:04:59.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.781][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:59.782][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:59.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.785][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:04:59.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:04:59.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.791][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:59.792][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:59.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.794][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.796][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:04:59.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:04:59.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.801][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:59.802][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:59.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.804][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:04:59.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:04:59.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.810][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:59.812][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:59.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.814][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:59.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:04:59.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.820][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:59.821][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:59.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.823][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:59.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:04:59.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.830][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:04:59.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:59.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:59.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:59.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:59.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:59.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.844][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:04:59.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:59.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:59.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:59.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:59.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:59.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.858][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:04:59.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:59.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:59.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:59.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:59.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:04:59.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.872][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:04:59.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:59.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:59.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:59.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:59.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:59.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.886][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:04:59.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:59.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:59.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:59.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:59.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:59.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:04:59.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:04:59.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:59.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:59.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:04:59.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:59.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:59.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:59.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:59.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:59.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:59.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:04:59.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:04:59.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:04:59.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:04:59.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:04:59.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:04:59.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:04:59.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:04:59.953][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:59.954][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:59.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.956][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:04:59.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:04:59.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.962][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:59.964][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:59.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.966][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:59.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:04:59.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.972][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:59.973][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:59.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.976][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:59.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:04:59.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.982][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:59.983][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:59.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.985][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:59.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:04:59.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.992][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:59.993][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:59.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:04:59.995][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:04:59.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:59.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:04:59.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.001][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:00.003][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:00.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.005][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:00.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:00.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.011][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:00.012][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:00.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.014][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.016][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:00.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:00.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.021][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:00.022][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:00.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.024][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.026][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:00.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:00.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.031][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:00.032][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:00.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.034][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.036][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:00.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:00.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.040][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:00.042][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:00.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.044][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:00.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:00.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.050][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:00.051][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:00.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.054][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.055][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:00.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:00.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.060][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:00.061][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:00.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.064][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:00.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:00.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.070][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:00.071][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:00.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.073][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.075][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:00.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:00.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.080][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:00.081][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:00.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.083][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:00.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:00.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.090][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:00.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:00.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:00.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:00.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:00.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:00.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.104][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:00.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:00.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:00.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:00.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:00.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:00.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.118][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:00.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:00.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:00.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:00.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:00.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:00.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.139][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:00.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:00.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:00.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:00.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:00.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:00.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.154][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:00.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:00.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:00.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:00.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:00.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:00.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:00.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:00.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:00.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:00.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:00.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:00.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:00.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:00.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:00.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:00.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:00.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:00.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:00.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:00.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:00.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:00.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:00.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:00.221][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:00.222][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:00.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.224][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:00.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:00.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.230][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:00.232][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:00.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.234][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:00.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:00.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.240][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:00.241][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:00.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.244][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:00.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:00.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.250][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:00.251][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:00.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.253][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:00.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:00.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.260][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:00.261][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:00.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.263][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:00.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:00.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.269][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:00.271][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:00.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.273][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:00.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:00.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.279][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:00.280][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:00.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.283][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.284][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:00.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:00.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.289][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:00.290][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:00.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.292][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.294][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:00.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:00.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.299][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:00.300][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:00.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.302][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:00.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:00.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.308][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:00.309][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:00.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.312][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:00.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:00.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.318][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:00.319][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:00.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.321][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.323][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:00.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:00.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.328][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:00.329][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:00.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.331][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:00.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:00.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.337][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:00.339][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:00.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.341][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:00.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:00.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.347][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:00.348][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:00.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.350][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:00.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:00.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.357][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:00.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:00.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:00.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:00.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:00.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:00.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.371][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:00.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:00.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:00.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:00.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:00.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:00.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.385][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:00.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:00.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:00.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:00.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:00.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:00.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.399][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:00.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:00.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:00.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:00.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:00.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:00.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.413][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:00.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:00.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:00.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:00.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:00.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:00.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.427][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:00.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:00.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:00.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:00.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.446][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:00.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:00.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:00.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:00.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:00.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:00.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:00.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:00.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:00.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:00.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:00.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:00.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:00.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:00.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:00.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:00.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:00.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:00.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:00.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:00.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:00.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:00.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:00.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:00.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:00.507][self$createEntryFromContent] Accession numbers: 172623142, 172622621, 172602027.
biodb.DEBUG[2025-02-08 16:05:00.508][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:00.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:00.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:00.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:00.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:00.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:00.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:00.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:00.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.540][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:00.541][private$selectFields]
biodb.TRACE[2025-02-08 16:05:00.542][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:00.543][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:00.545][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:00.546][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.547][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.549][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.550][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.552][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.554][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.555][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:00.556][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:00.557][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.558][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.561][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.562][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:00.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.567][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.577][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-02-08 16:05:00.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:00.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:00.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:00.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:00.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:00.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:00.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:00.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.601][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:00.603][private$selectFields]
biodb.TRACE[2025-02-08 16:05:00.604][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:00.605][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:00.606][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:00.607][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.608][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.612][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.614][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.615][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.617][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.618][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:00.620][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:00.621][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.622][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.624][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.625][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:00.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.641][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622621].
biodb.DEBUG[2025-02-08 16:05:00.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:00.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:00.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:00.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:00.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:00.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:00.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:00.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.666][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:00.667][private$selectFields]
biodb.TRACE[2025-02-08 16:05:00.668][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:00.669][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:00.670][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:00.672][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.673][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.675][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.676][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.677][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.680][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.681][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:00.682][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:00.683][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.684][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.687][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.688][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:00.689][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:00.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:00.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:00.703][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172602027].
biodb.DEBUG[2025-02-08 16:05:00.705][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:00.706][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:00.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:00.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:00.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:00.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:00.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:00.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:00.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:00.727][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:00.731][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:05:00.732][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:05:00.734][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-08 16:05:00.802][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:05:00.803][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:05:00.805][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:05:00.807][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:05:00.858][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:05:00.861][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2025-02-08 16:05:00.867][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2025-02-08 16:05:00.870][private$loadEntries] Creating entries from ids [2]: "172641880, 172634706".
biodb.DEBUG[2025-02-08 16:05:00.871][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-08 16:05:00.873][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172641880, 172634706".
biodb.TRACE[2025-02-08 16:05:00.874][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-02-08 16:05:00.876][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:05:00.877][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:05:00.878][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:05:00.880][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:05:00.881][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-08 16:05:00.895][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-02-08 16:05:00.898][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172641880,172634706/XML".
biodb.DEBUG[2025-02-08 16:05:00.900][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:05:00.901][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:05:00.903][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172641880,172634706/XML".
biodb.TRACE[2025-02-08 16:05:01.018][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172641880,172634706/XML).
biodb.TRACE[2025-02-08 16:05:01.162][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172641880.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172634706.xml"
biodb.DEBUG[2025-02-08 16:05:01.165][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:05:01.167][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-08 16:05:01.169][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:05:01.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:01.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:01.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:01.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:01.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:01.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:01.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:01.186][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:01.187][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:01.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.190][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:01.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:01.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.196][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:01.197][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:01.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.199][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:01.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:01.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.206][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:01.207][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:01.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.210][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:01.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:01.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.216][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:01.217][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:01.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.219][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:01.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:01.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.226][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:01.227][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:01.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.229][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:01.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:01.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.236][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:01.237][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:01.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.239][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:01.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:01.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.246][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:01.247][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:01.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.249][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.251][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:01.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:01.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.255][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:01.257][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:01.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.259][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:01.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:01.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.265][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:01.266][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:01.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.269][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:01.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:01.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.275][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:01.276][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:01.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.278][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:01.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:01.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.285][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:01.286][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:01.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.288][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.290][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:01.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:01.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.305][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:01.307][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:01.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.309][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:01.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:01.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.315][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:01.317][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:01.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.319][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.320][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:01.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:01.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.325][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:01.327][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:01.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.329][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.330][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:01.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:01.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.335][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:01.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:01.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:01.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:01.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:01.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:01.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.349][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:01.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:01.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:01.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:01.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:01.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:01.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.364][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:01.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:01.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:01.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:01.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:01.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:01.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.378][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:01.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:01.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:01.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:01.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:01.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:01.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.392][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:01.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:01.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:01.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:01.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:01.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:01.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.407][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:01.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:01.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:01.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:01.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.426][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:01.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:01.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:01.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:01.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:01.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:01.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:01.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:01.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:01.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:01.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:01.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:01.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:01.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:01.463][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:01.465][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:01.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.467][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:01.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:01.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.473][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:01.475][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:01.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.477][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:01.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:01.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.483][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:01.485][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:01.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.487][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:01.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:01.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.493][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:01.495][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:01.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.497][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:01.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:01.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.503][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:01.505][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:01.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.507][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:01.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:01.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.513][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:01.514][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:01.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.517][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:01.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:01.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.523][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:01.524][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:01.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.527][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.528][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:01.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:01.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.533][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:01.534][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:01.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.537][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:01.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:01.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.543][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:01.544][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:01.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.546][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:01.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:01.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.553][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:01.554][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:01.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.556][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:01.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:01.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.563][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:01.564][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:01.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.566][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.568][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:01.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:01.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.573][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:01.574][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:01.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.576][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:01.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:01.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.583][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:01.584][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:01.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.586][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:01.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:01.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.593][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:01.594][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:01.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.596][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.598][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:01.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:01.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.603][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:01.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:01.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:01.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:01.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:01.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:01.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.617][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:01.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:01.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:01.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:01.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:01.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:01.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.631][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:01.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:01.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:01.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:01.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:01.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:01.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.646][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:01.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:01.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:01.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:01.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:01.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:01.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.660][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:01.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:01.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:01.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:01.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:01.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:01.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:01.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:01.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:01.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:01.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:01.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:01.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:01.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:01.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:01.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:01.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:01.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:01.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:01.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:01.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:01.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:01.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:01.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:01.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:01.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:01.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:01.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:01.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:01.771][self$createEntryFromContent] Accession numbers: 172641880, 172634706.
biodb.DEBUG[2025-02-08 16:05:01.772][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:01.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:01.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:01.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:01.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:01.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:01.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:01.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:01.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.845][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:01.847][private$selectFields]
biodb.TRACE[2025-02-08 16:05:01.848][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:01.849][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:01.850][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:01.851][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.853][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.855][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.856][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.857][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.860][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.861][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:01.870][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:01.871][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.873][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.875][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.876][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:01.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.892][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:05:01.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:01.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:01.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:01.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:01.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:01.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:01.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:01.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.917][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:01.918][private$selectFields]
biodb.TRACE[2025-02-08 16:05:01.919][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:01.920][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:01.921][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:01.922][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.924][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.926][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.927][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.928][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.931][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.932][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:01.933][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:01.934][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.935][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.938][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.939][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:01.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.962][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-08 16:05:01.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:01.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:01.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:01.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:01.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:01.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:01.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:01.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.987][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:01.988][private$selectFields]
biodb.TRACE[2025-02-08 16:05:01.989][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:01.990][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:01.992][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:01.993][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.994][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:01.996][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:01.997][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:01.999][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.001][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.002][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:02.003][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:02.004][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.006][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.008][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.009][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:02.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.025][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-02-08 16:05:02.026][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:02.028][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-08 16:05:02.038][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:05:02.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:05:02.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.043][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:05:02.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:05:02.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:05:02.054][biodb::testThat]
biodb.INFO [2025-02-08 16:05:02.055][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-02-08 16:05:02.056][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:05:02.057][biodb::testThat]
biodb.TRACE[2025-02-08 16:05:02.061][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:05:02.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:05:02.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.066][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:05:02.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:05:02.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:02.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:02.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:02.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:02.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:02.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:02.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:02.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:02.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:02.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:02.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:02.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:02.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:02.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:02.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:02.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:02.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:02.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:02.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:02.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:02.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:02.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:02.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:02.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:02.139][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:02.142][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:02.144][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2025-02-08 16:05:02.146][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:02.162][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2025-02-08 16:05:02.164][private$loadEntries] Creating entries from ids [1]: "172574413".
biodb.DEBUG[2025-02-08 16:05:02.166][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:05:02.167][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172574413".
biodb.TRACE[2025-02-08 16:05:02.169][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:02.185][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172574413.xml".
biodb.DEBUG[2025-02-08 16:05:02.187][conn$getEntryContent] 1 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:05:02.188][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:05:02.190][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:05:02.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:02.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:02.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:02.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:02.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:02.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:02.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:02.207][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:02.209][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:02.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.211][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:02.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:02.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.217][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:02.218][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:02.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.221][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:02.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:02.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.227][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:02.228][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:02.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.231][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:02.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:02.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.237][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:02.238][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:02.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.243][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:02.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:02.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.249][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:02.251][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:02.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.253][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:02.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:02.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.259][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:02.261][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:02.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.263][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:02.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:02.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.269][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:02.271][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:02.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.273][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.274][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:02.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:02.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.279][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:02.280][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:02.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.283][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:02.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:02.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.289][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:02.290][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:02.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.292][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:02.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:02.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.299][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:02.300][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:02.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.302][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:02.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:02.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.308][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:02.310][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:02.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.312][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.313][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:02.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:02.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.318][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:02.319][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:02.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.322][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:02.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:02.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.328][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:02.329][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:02.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.331][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.333][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:02.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:02.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.338][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:02.339][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:02.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.341][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.343][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:02.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:02.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.347][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:02.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:02.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:02.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:02.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:02.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:02.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.361][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:02.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:02.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:02.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:02.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:02.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:02.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.375][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:02.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:02.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:02.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:02.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:02.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:02.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.390][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:02.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:02.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:02.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:02.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:02.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:02.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.404][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:02.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:02.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:02.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:02.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:02.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:02.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.418][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:02.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:02.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:02.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:02.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:02.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:02.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:02.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:02.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:02.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:02.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:02.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:02.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:02.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:02.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:02.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:02.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:02.471][self$createEntryFromContent] Accession numbers: 172574413.
biodb.DEBUG[2025-02-08 16:05:02.472][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:02.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:02.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:02.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:02.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:02.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:02.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:02.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:02.506][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.522][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:02.523][private$selectFields]
biodb.TRACE[2025-02-08 16:05:02.524][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:02.526][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:02.527][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:02.528][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.529][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.531][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.533][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.534][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.536][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.537][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:02.538][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:02.540][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.541][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.543][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.544][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:02.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.560][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-08 16:05:02.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:02.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:02.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:02.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:02.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:02.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:02.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:02.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.584][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:02.586][private$selectFields]
biodb.TRACE[2025-02-08 16:05:02.587][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:02.588][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:02.589][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:02.590][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.591][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.594][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.595][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.596][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.598][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.599][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:02.601][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:02.602][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.603][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.605][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.606][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:02.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.622][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-02-08 16:05:02.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:02.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:02.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:02.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:02.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:02.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:02.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:02.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.646][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:02.647][private$selectFields]
biodb.TRACE[2025-02-08 16:05:02.648][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:02.649][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:02.650][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:02.652][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.653][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.655][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.656][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.658][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.660][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.661][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:02.662][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:02.663][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.664][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.667][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.668][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:02.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:02.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:02.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:02.691][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172574413].
biodb.DEBUG[2025-02-08 16:05:02.692][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:02.693][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:02.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:02.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:02.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:02.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:02.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:02.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:02.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:02.714][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:02.718][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:05:02.719][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:05:02.721][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-08 16:05:02.797][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:05:02.799][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:05:02.800][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:05:02.802][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:05:02.968][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:05:02.971][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2025-02-08 16:05:02.976][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2025-02-08 16:05:02.979][private$loadEntries] Creating entries from ids [2]: "172524779, 172415476".
biodb.DEBUG[2025-02-08 16:05:02.980][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-08 16:05:02.982][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172524779, 172415476".
biodb.TRACE[2025-02-08 16:05:02.984][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-02-08 16:05:02.985][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:05:02.986][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:05:02.988][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:05:02.989][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:05:02.990][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-08 16:05:02.991][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-02-08 16:05:02.993][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172524779,172415476/XML".
biodb.DEBUG[2025-02-08 16:05:02.996][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:05:02.997][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:05:02.998][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172524779,172415476/XML".
biodb.TRACE[2025-02-08 16:05:03.112][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172524779,172415476/XML).
biodb.TRACE[2025-02-08 16:05:03.296][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172524779.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172415476.xml"
biodb.DEBUG[2025-02-08 16:05:03.299][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:05:03.301][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-08 16:05:03.303][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:05:03.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:03.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:03.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:03.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:03.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:03.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:03.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:03.319][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:03.321][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:03.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.323][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:03.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:03.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.329][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:03.330][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:03.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.333][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:03.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:03.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.339][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:03.340][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:03.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.342][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:03.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:03.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.349][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:03.350][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:03.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.352][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:03.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:03.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.358][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:03.360][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:03.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.362][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:03.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:03.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.368][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:03.369][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:03.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.372][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:03.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:03.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.378][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:03.379][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:03.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.381][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.383][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:03.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:03.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.388][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:03.389][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:03.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.391][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.393][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:03.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:03.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.397][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:03.399][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:03.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.401][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:03.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:03.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.407][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:03.408][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:03.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.410][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:03.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:03.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.417][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:03.418][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:03.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.420][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.422][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:03.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:03.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.426][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:03.428][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:03.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.430][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:03.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:03.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.436][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:03.437][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:03.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.440][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:03.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:03.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.461][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:03.463][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:03.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.467][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.469][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:03.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:03.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.478][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:03.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:03.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:03.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:03.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:03.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:03.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.502][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:03.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:03.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:03.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:03.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:03.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:03.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.525][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:03.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:03.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:03.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:03.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:03.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:03.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.546][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:03.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:03.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:03.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:03.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:03.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:03.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.568][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:03.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:03.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:03.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:03.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:03.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:03.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:03.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:03.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:03.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:03.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:03.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:03.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:03.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:03.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:03.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:03.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:03.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:03.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:03.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:03.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:03.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:03.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:03.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:03.638][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:03.639][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:03.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.642][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:03.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:03.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.648][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:03.649][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:03.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.652][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:03.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:03.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.658][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:03.659][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:03.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.662][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:03.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:03.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.668][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:03.670][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:03.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.672][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:03.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:03.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.678][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:03.680][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:03.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.682][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:03.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:03.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.688][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:03.690][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:03.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.692][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:03.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:03.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.698][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:03.699][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:03.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.702][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.703][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:03.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:03.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.708][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:03.709][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:03.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.712][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.713][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:03.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:03.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.718][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:03.719][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:03.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.722][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:03.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:03.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.728][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:03.729][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:03.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.731][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:03.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:03.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.738][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:03.739][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:03.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.741][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.743][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:03.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:03.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.748][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:03.749][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:03.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.751][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:03.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:03.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.758][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:03.759][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:03.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.761][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:03.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:03.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.768][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:03.769][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:03.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.771][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:03.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:03.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.778][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:03.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:03.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:03.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:03.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:03.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:03.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.792][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:03.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:03.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:03.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:03.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:03.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:03.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.807][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:03.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:03.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:03.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:03.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:03.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:03.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.821][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:03.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:03.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:03.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:03.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:03.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:03.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.835][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:03.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:03.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:03.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:03.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:03.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:03.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.849][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:03.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:03.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:03.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:03.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:03.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:03.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:03.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:03.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:03.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:03.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:03.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:03.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:03.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:03.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:03.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:03.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:03.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:03.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:03.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:03.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:03.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:03.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:03.924][self$createEntryFromContent] Accession numbers: 172524779, 172415476.
biodb.DEBUG[2025-02-08 16:05:03.925][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:03.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:03.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:03.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:03.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:03.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:03.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:03.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:03.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.951][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:03.952][private$selectFields]
biodb.TRACE[2025-02-08 16:05:03.953][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:03.955][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:03.956][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:03.957][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.958][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.960][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.962][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.963][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.965][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.966][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:03.968][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:03.969][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.970][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.972][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.973][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:03.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:03.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:03.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:03.989][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:05:03.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:03.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:03.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:04.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:04.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:04.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:04.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:04.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.009][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.014][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:04.015][private$selectFields]
biodb.TRACE[2025-02-08 16:05:04.016][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:04.017][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:04.019][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:04.020][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.021][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.023][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.025][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.026][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.028][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.029][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:04.030][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:04.032][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.033][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.035][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.036][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:04.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.052][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172524779].
biodb.DEBUG[2025-02-08 16:05:04.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:04.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:04.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:04.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:04.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:04.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:04.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:04.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.077][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:04.079][private$selectFields]
biodb.TRACE[2025-02-08 16:05:04.080][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:04.081][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:04.082][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:04.083][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.085][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.087][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.088][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.089][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.091][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.093][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:04.094][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:04.095][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.096][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.099][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.100][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:04.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.116][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172415476].
biodb.DEBUG[2025-02-08 16:05:04.117][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:04.118][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-08 16:05:04.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:04.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:04.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:04.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:04.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:04.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:04.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:04.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:04.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:04.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:04.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:04.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:04.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:04.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:04.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:04.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:04.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:04.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:04.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:04.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:04.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:04.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:04.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:04.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:04.189][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:04.193][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:04.195][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2025-02-08 16:05:04.196][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:04.211][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2025-02-08 16:05:04.213][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:04.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:04.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:04.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:04.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:04.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:04.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:04.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:04.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.260][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:04.261][private$selectFields]
biodb.TRACE[2025-02-08 16:05:04.262][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:04.263][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:04.265][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:04.266][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.267][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.269][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.270][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.272][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.274][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.275][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:04.276][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:04.278][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.279][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.281][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.282][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:04.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.298][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-02-08 16:05:04.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:04.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:04.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:04.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:04.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:04.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:04.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:04.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.331][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:04.332][private$selectFields]
biodb.TRACE[2025-02-08 16:05:04.333][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:04.334][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:04.336][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:04.337][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.338][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.340][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.342][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.343][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.345][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.347][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:04.348][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:04.349][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.350][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.353][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.354][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:04.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.370][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622621].
biodb.DEBUG[2025-02-08 16:05:04.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:04.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:04.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:04.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:04.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:04.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:04.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:04.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.390][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.395][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:04.396][private$selectFields]
biodb.TRACE[2025-02-08 16:05:04.398][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:04.399][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:04.400][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:04.401][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.402][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.405][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.406][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.407][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.409][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.411][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:04.412][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:04.413][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.414][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.416][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.418][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:04.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:04.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.434][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172602027].
biodb.DEBUG[2025-02-08 16:05:04.435][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:04.436][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:04.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:04.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:04.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:04.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:04.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:04.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:04.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:04.463][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:04.468][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:05:04.470][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:05:04.472][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-08 16:05:04.550][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:05:04.552][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:05:04.554][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:05:04.555][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:05:04.605][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:05:04.609][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2025-02-08 16:05:04.614][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2025-02-08 16:05:04.617][private$loadEntries] Creating entries from ids [2]: "172583683, 172561660".
biodb.DEBUG[2025-02-08 16:05:04.618][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-08 16:05:04.620][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172583683, 172561660".
biodb.TRACE[2025-02-08 16:05:04.622][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-02-08 16:05:04.623][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:05:04.625][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:05:04.626][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:05:04.627][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:05:04.628][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-08 16:05:04.630][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-02-08 16:05:04.632][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172583683,172561660/XML".
biodb.DEBUG[2025-02-08 16:05:04.634][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:05:04.635][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:05:04.637][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172583683,172561660/XML".
biodb.TRACE[2025-02-08 16:05:04.736][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172583683,172561660/XML).
biodb.TRACE[2025-02-08 16:05:04.865][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172583683.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172561660.xml"
biodb.DEBUG[2025-02-08 16:05:04.868][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:05:04.870][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-08 16:05:04.871][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:05:04.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:04.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:04.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:04.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:04.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:04.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:04.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:04.889][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:04.890][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:04.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.892][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:04.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:04.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.899][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:04.900][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:04.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.902][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:04.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:04.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.908][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:04.910][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:04.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.912][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:04.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:04.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.918][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:04.919][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:04.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.922][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:04.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:04.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.928][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:04.929][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:04.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.931][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:04.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:04.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.938][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:04.939][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:04.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.941][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:04.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:04.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.948][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:04.949][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:04.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.951][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.953][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:04.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:04.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.957][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:04.959][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:04.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.961][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.962][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:04.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:04.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.967][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:04.969][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:04.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.971][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:04.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:04.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.977][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:04.978][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:04.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.981][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:04.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:04.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.987][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:04.988][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:04.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.991][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.992][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:04.993][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:04.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:04.996][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:04.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:04.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:04.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.002][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:05.003][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:05.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.005][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:05.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:05.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.012][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:05.013][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:05.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.015][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.017][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:05.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:05.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.022][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:05.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:05.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:05.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:05.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:05.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:05.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.036][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:05.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:05.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:05.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:05.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:05.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:05.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.050][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:05.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:05.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:05.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:05.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:05.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:05.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.064][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:05.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:05.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:05.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:05.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:05.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:05.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.079][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:05.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:05.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:05.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:05.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:05.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:05.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:05.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:05.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.113][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:05.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:05.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:05.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:05.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:05.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:05.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:05.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:05.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:05.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:05.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:05.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:05.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:05.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:05.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:05.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:05.158][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:05.160][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:05.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.162][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:05.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:05.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.168][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:05.169][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:05.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.172][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:05.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:05.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.178][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:05.179][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:05.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.182][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:05.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:05.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.188][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:05.189][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:05.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.191][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:05.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:05.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.198][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:05.199][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:05.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.201][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:05.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:05.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.208][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:05.209][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:05.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.211][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:05.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:05.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.218][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:05.219][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:05.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.221][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.223][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:05.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:05.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.228][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:05.229][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:05.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.231][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:05.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:05.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.238][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:05.239][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:05.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.241][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:05.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:05.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.247][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:05.249][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:05.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.251][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:05.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:05.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.257][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:05.259][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:05.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.261][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.262][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:05.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:05.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.267][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:05.268][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:05.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.271][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:05.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:05.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.277][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:05.278][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:05.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.281][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.282][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:05.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:05.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.287][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:05.288][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:05.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.290][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.292][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:05.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:05.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.297][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:05.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:05.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:05.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:05.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:05.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:05.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.311][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:05.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:05.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:05.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:05.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:05.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:05.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.325][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:05.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:05.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:05.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:05.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:05.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:05.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.339][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:05.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:05.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:05.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:05.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:05.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:05.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.353][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:05.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:05.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:05.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:05.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:05.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:05.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.367][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:05.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:05.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:05.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:05.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:05.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:05.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:05.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:05.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:05.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:05.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:05.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:05.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:05.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:05.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:05.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:05.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:05.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:05.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:05.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:05.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:05.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:05.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:05.434][self$createEntryFromContent] Accession numbers: 172583683, 172561660.
biodb.DEBUG[2025-02-08 16:05:05.435][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:05.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:05.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:05.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:05.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:05.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:05.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:05.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:05.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.461][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:05.462][private$selectFields]
biodb.TRACE[2025-02-08 16:05:05.463][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:05.465][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:05.466][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:05.467][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.468][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.470][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.472][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.473][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.475][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.476][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:05.477][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:05.479][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.480][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.482][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.483][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:05.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.499][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:05:05.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:05.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:05.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:05.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:05.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:05.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:05.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:05.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.533][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:05.534][private$selectFields]
biodb.TRACE[2025-02-08 16:05:05.536][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:05.537][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:05.538][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:05.539][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.540][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.543][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.544][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.545][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.548][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.549][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:05.550][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:05.551][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.552][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.555][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.556][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:05.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.567][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.579][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172583683].
biodb.DEBUG[2025-02-08 16:05:05.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:05.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:05.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:05.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:05.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:05.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:05.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:05.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.604][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:05.605][private$selectFields]
biodb.TRACE[2025-02-08 16:05:05.606][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:05.607][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:05.608][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:05.609][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.611][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.613][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.614][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.615][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.618][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.619][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:05.620][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:05.621][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.622][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.625][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.626][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:05.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.641][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172561660].
biodb.DEBUG[2025-02-08 16:05:05.643][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:05.644][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-08 16:05:05.654][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:05:05.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:05:05.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.659][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:05:05.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:05:05.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:05:05.669][biodb::testThat]
biodb.INFO [2025-02-08 16:05:05.671][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-02-08 16:05:05.672][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:05:05.673][biodb::testThat]
biodb.TRACE[2025-02-08 16:05:05.677][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:05:05.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:05:05.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.681][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:05:05.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:05:05.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:05.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:05.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:05.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:05.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:05.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:05.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:05.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:05.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:05.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:05.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:05.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:05.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:05.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:05.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:05.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:05.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:05.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:05.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:05.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:05.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:05.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:05.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:05.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:05.752][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:05.755][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:05.757][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-08 16:05:05.758][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:05.761][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-08 16:05:05.763][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:05.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:05.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:05.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:05.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:05.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:05.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:05.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:05.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.788][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:05.789][private$selectFields]
biodb.TRACE[2025-02-08 16:05:05.790][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:05.791][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:05.792][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:05.794][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.795][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.797][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.798][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.800][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.802][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.803][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:05.804][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:05.805][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.807][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.809][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.810][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:05.811][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.826][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-08 16:05:05.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:05.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:05.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:05.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:05.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:05.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:05.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:05.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.851][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:05.852][private$selectFields]
biodb.TRACE[2025-02-08 16:05:05.853][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:05.854][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:05.855][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:05.856][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.858][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.860][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.861][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.862][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.864][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.866][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:05.867][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:05.868][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.869][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.871][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.873][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:05.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:05.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:05.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:05.888][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-02-08 16:05:05.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:05.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:05.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:05.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:05.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:05.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:05.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:06.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.111][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.112][private$selectFields]
biodb.TRACE[2025-02-08 16:05:06.113][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:06.114][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:06.115][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.116][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.118][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.120][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.121][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.122][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.124][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.126][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.127][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.128][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.129][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.131][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.132][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:06.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.148][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172593299].
biodb.DEBUG[2025-02-08 16:05:06.149][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:06.150][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:06.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:06.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:06.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:06.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:06.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:06.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:06.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:06.171][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:06.174][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:06.176][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-02-08 16:05:06.177][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:06.180][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-02-08 16:05:06.182][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:06.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:06.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:06.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:06.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:06.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:06.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:06.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:06.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.206][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.207][private$selectFields]
biodb.TRACE[2025-02-08 16:05:06.208][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:06.210][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:06.211][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.212][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.213][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.215][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.216][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.218][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.220][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.221][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.222][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.223][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.225][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.227][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.228][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:06.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.243][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:05:06.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:06.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:06.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:06.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:06.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:06.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:06.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:06.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.268][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.269][private$selectFields]
biodb.TRACE[2025-02-08 16:05:06.270][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:06.271][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:06.272][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.273][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.274][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.277][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.278][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.279][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.281][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.282][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.284][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.285][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.286][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.288][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.289][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:06.291][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.305][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2025-02-08 16:05:06.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:06.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:06.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:06.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:06.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:06.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:06.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:06.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.329][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.331][private$selectFields]
biodb.TRACE[2025-02-08 16:05:06.332][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:06.333][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:06.334][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.335][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.336][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.339][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.340][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.341][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.343][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.344][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.345][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.347][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.348][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.350][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.351][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:06.352][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.367][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2025-02-08 16:05:06.368][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:06.369][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-08 16:05:06.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:06.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:06.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:06.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:06.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:06.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:06.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:06.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:06.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:06.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:06.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:06.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:06.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:06.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:06.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:06.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:06.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:06.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:06.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:06.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:06.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:06.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:06.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:06.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:06.458][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:06.462][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:06.463][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-08 16:05:06.465][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:06.467][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-08 16:05:06.469][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:06.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:06.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:06.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:06.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:06.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:06.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:06.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:06.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.494][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.495][private$selectFields]
biodb.TRACE[2025-02-08 16:05:06.501][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:06.503][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:06.504][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.505][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.506][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.508][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.510][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.511][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.513][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.514][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.515][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.517][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.518][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.520][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.521][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:06.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.537][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-02-08 16:05:06.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:06.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:06.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:06.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:06.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:06.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:06.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:06.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.561][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.562][private$selectFields]
biodb.TRACE[2025-02-08 16:05:06.563][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:06.565][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:06.566][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.567][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.568][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.570][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.571][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.573][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.575][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.576][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.577][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.578][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.580][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.582][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.583][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:06.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.589][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.598][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622621].
biodb.DEBUG[2025-02-08 16:05:06.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:06.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:06.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:06.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:06.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:06.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:06.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:06.613][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.623][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.624][private$selectFields]
biodb.TRACE[2025-02-08 16:05:06.625][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:06.626][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:06.627][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.628][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.630][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.632][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.633][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.634][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.636][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.638][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.639][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.640][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.641][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.643][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.644][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:06.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.660][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172602027].
biodb.DEBUG[2025-02-08 16:05:06.661][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:06.662][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:06.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:06.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:06.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:06.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:06.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:06.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:06.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:06.684][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:06.688][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:06.689][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-02-08 16:05:06.691][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:06.693][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-02-08 16:05:06.695][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:06.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:06.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:06.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:06.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:06.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:06.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:06.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:06.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.720][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.721][private$selectFields]
biodb.TRACE[2025-02-08 16:05:06.722][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:06.724][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:06.725][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.726][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.727][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.729][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.730][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.732][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.734][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.735][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.736][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.737][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.739][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.741][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.742][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:06.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.758][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:05:06.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:06.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:06.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:06.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:06.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:06.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:06.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:06.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.782][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.783][private$selectFields]
biodb.TRACE[2025-02-08 16:05:06.784][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:06.786][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:06.787][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.788][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.789][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.791][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.793][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.794][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.796][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.797][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.798][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.800][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.801][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.803][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.804][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:06.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-08 16:05:06.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:06.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:06.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:06.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:06.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:06.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:06.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:06.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.844][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.845][private$selectFields]
biodb.TRACE[2025-02-08 16:05:06.846][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:06.847][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:06.848][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.849][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.851][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.853][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.854][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.855][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.857][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.859][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.860][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:06.861][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.862][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.865][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.866][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:06.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.876][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:06.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.881][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-02-08 16:05:06.882][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:06.884][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-08 16:05:06.909][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:05:06.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:05:06.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.914][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:05:06.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:05:06.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.928][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:06.929][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:06.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.932][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.933][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:06.934][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:06.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.936][ef$get] fields variable is a list.
biodb.INFO [2025-02-08 16:05:06.938][biodb::testThat]
biodb.INFO [2025-02-08 16:05:06.939][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-02-08 16:05:06.941][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:05:06.942][biodb::testThat]
biodb.TRACE[2025-02-08 16:05:06.945][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:05:06.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:05:06.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.950][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:05:06.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:05:06.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:06.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:06.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:06.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:06.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:06.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:06.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:06.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:06.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:06.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:06.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:06.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:06.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:06.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:06.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:06.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:06.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:06.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:06.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:06.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:06.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:06.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:07.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:07.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:07.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:07.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:07.013][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:07.017][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:05:07.018][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:05:07.020][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-08 16:05:07.086][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:05:07.088][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:05:07.089][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:05:07.091][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:05:07.239][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:05:07.242][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2025-02-08 16:05:07.246][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2025-02-08 16:05:07.249][private$loadEntries] Creating entries from ids [3]: "172645658, 75629699, 172639225".
biodb.DEBUG[2025-02-08 16:05:07.251][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-08 16:05:07.252][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172645658, 75629699, 172639225".
biodb.TRACE[2025-02-08 16:05:07.254][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-02-08 16:05:07.256][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:05:07.257][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:05:07.258][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:05:07.259][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:05:07.260][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-08 16:05:07.262][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-02-08 16:05:07.264][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172645658,75629699,172639225/XML".
biodb.DEBUG[2025-02-08 16:05:07.266][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:05:07.267][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:05:07.269][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172645658,75629699,172639225/XML".
biodb.TRACE[2025-02-08 16:05:07.497][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172645658,75629699,172639225/XML).
biodb.TRACE[2025-02-08 16:05:07.713][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172645658.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/75629699.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172639225.xml"
biodb.DEBUG[2025-02-08 16:05:07.717][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:05:07.719][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-08 16:05:07.720][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:05:07.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:07.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:07.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:07.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:07.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:07.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:07.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:07.737][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:07.738][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:07.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.741][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:07.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:07.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.747][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:07.748][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:07.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.750][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:07.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:07.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.757][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:07.758][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:07.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.760][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:07.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:07.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.767][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:07.768][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:07.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.770][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:07.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:07.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.777][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:07.778][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:07.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.780][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:07.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:07.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.786][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:07.787][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:07.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.790][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:07.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:07.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.796][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:07.797][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:07.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.799][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.801][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:07.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:07.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.806][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:07.807][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:07.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.809][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:07.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:07.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.815][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:07.816][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:07.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.819][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:07.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:07.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.825][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:07.826][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:07.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.828][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:07.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:07.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.834][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:07.836][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:07.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.838][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.839][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:07.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:07.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.844][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:07.845][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:07.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.847][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:07.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:07.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.854][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:07.855][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:07.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.857][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.859][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:07.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:07.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.863][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:07.865][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:07.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.867][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.868][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:07.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:07.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.873][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:07.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:07.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:07.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:07.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:07.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:07.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.887][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:07.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:07.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:07.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:07.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:07.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:07.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.901][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:07.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:07.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:07.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:07.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:07.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:07.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.915][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:07.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:07.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:07.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:07.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:07.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:07.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.929][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:07.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:07.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:07.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:07.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.938][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:07.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:07.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:07.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:07.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:07.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:07.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:07.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:07.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:07.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:07.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:07.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:07.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:07.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:07.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:07.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:07.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:07.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:07.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:07.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:07.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:07.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:07.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:07.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:07.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:08.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:08.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:08.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:08.006][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:08.007][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:08.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.009][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:08.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:08.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.015][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:08.016][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:08.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.019][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:08.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:08.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.025][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:08.026][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:08.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.028][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:08.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:08.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.035][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:08.036][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:08.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.038][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:08.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:08.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.044][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:08.046][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:08.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.048][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:08.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:08.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.054][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:08.055][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:08.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.058][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:08.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:08.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.064][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:08.065][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:08.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.067][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.069][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:08.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:08.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.074][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:08.075][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:08.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.077][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.079][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:08.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:08.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.083][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:08.085][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:08.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.087][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:08.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:08.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.093][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:08.094][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:08.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.096][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:08.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:08.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.103][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:08.104][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:08.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.106][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.108][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:08.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:08.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.113][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:08.114][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:08.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.116][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:08.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:08.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.122][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:08.123][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:08.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.126][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:08.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:08.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.132][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:08.133][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:08.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.135][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:08.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:08.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.142][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:08.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:08.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:08.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:08.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:08.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:08.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.156][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:08.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:08.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:08.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:08.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:08.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:08.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.170][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:08.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:08.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:08.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:08.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:08.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:08.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.184][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:08.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:08.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:08.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:08.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:08.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:08.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.198][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:08.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:08.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:08.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:08.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:08.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:08.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:08.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:08.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.217][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:08.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:08.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:08.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:08.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:08.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:08.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:08.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:08.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:08.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:08.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:08.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:08.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:08.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:08.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:08.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:08.264][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:08.266][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:08.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.268][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:08.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:08.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.274][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:08.275][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:08.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.277][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:08.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:08.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.283][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:08.285][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:08.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.287][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:08.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:08.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.293][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:08.294][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:08.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.296][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:08.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:08.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.303][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:08.304][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:08.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.306][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:08.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:08.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.312][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:08.313][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:08.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.316][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:08.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:08.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.322][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:08.323][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:08.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.325][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.327][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:08.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:08.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.331][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:08.332][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:08.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.335][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:08.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:08.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.341][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:08.342][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:08.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.344][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:08.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:08.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.350][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:08.352][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:08.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.354][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:08.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:08.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.360][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:08.361][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:08.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.364][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.365][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:08.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:08.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.370][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:08.371][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:08.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.373][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:08.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:08.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.380][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:08.381][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:08.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.383][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:08.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:08.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.389][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:08.391][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:08.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.393][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.394][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:08.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:08.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.404][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:08.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:08.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:08.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:08.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:08.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:08.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.418][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:08.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:08.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:08.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:08.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:08.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:08.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.432][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:08.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:08.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:08.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:08.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:08.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:08.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.447][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:08.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:08.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:08.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:08.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:08.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:08.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.461][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:08.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:08.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:08.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:08.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:08.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:08.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:08.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:08.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.479][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:08.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:08.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:08.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:08.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:08.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:08.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:08.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:08.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:08.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:08.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:08.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:08.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:08.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:08.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:08.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:08.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:08.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:08.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:08.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:08.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:08.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:08.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:08.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:08.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:08.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:08.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:08.553][self$createEntryFromContent] Accession numbers: 172645658, 75629699, 172639225.
biodb.DEBUG[2025-02-08 16:05:08.554][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:08.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:08.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:08.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:08.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:08.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:08.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:08.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:08.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.579][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:08.580][private$selectFields]
biodb.TRACE[2025-02-08 16:05:08.582][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:08.583][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:08.584][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:08.585][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.586][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.588][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.589][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.591][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.593][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.594][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:08.595][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:08.596][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.598][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.600][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.601][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:08.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.623][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645658].
biodb.DEBUG[2025-02-08 16:05:08.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:08.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:08.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:08.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:08.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:08.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:08.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:08.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.643][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.648][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:08.649][private$selectFields]
biodb.TRACE[2025-02-08 16:05:08.650][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:08.651][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:08.652][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:08.653][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.654][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.657][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.658][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.659][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.661][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.662][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:08.664][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:08.665][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.666][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.668][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.669][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:08.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.685][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [75629699].
biodb.DEBUG[2025-02-08 16:05:08.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:08.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:08.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:08.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:08.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:08.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:08.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:08.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.709][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:08.710][private$selectFields]
biodb.TRACE[2025-02-08 16:05:08.711][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:08.713][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:08.714][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:08.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.716][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.718][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.719][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.721][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.723][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.724][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:08.725][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:08.727][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.728][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.730][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.731][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:08.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:08.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:08.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:08.747][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639225].
biodb.DEBUG[2025-02-08 16:05:08.748][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:08.749][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:08.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:08.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:08.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:08.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:08.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:08.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:08.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:08.770][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:08.773][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:05:08.774][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:05:08.776][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-08 16:05:08.857][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:05:08.859][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:05:08.860][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:05:08.862][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:05:08.922][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:05:08.925][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2025-02-08 16:05:08.929][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2025-02-08 16:05:08.932][private$loadEntries] Creating entries from ids [3]: "172645198, 172645159, 172645048".
biodb.DEBUG[2025-02-08 16:05:08.934][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-08 16:05:08.936][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172645198, 172645159, 172645048".
biodb.TRACE[2025-02-08 16:05:08.937][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-02-08 16:05:08.939][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:05:08.946][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:05:08.948][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:05:08.949][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:05:08.950][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-08 16:05:08.951][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-02-08 16:05:08.953][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172645198,172645159,172645048/XML".
biodb.DEBUG[2025-02-08 16:05:08.956][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:05:08.957][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:05:08.958][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172645198,172645159,172645048/XML".
biodb.TRACE[2025-02-08 16:05:09.072][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172645198,172645159,172645048/XML).
biodb.TRACE[2025-02-08 16:05:09.189][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172645198.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172645159.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172645048.xml"
biodb.DEBUG[2025-02-08 16:05:09.194][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:05:09.195][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-08 16:05:09.197][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:05:09.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:09.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:09.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:09.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:09.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:09.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:09.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:09.214][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.223][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.225][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.227][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.233][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.234][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.236][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.243][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.244][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.246][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.252][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.254][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.256][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.262][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.263][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.265][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.272][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:09.273][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:09.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.275][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.277][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:09.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:09.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.282][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:09.283][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:09.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.285][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.287][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:09.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:09.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.292][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:09.293][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:09.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.295][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:09.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:09.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.301][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:09.303][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:09.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.305][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:09.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:09.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.311][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:09.312][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:09.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.315][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.316][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:09.317][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:09.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.319][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:09.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:09.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.326][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:09.327][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:09.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.329][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:09.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:09.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.336][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:09.337][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:09.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.339][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.341][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:09.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:09.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.346][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:09.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.360][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:09.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.375][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:09.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.389][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:09.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.403][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:09.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.417][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:09.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:09.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:09.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:09.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.426][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:09.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:09.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:09.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:09.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:09.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:09.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:09.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:09.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:09.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:09.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:09.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:09.471][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.472][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.474][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.480][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.482][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.484][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.490][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.491][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.494][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.500][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.501][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.503][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.510][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.511][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.513][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.520][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.521][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.523][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.530][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:09.531][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:09.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.533][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.535][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:09.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:09.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.539][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:09.541][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:09.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.543][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.544][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:09.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:09.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.549][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:09.550][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:09.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.553][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:09.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:09.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.559][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:09.560][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:09.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.563][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:09.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:09.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.569][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:09.570][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:09.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.573][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.574][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:09.575][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:09.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.578][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:09.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:09.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.591][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:09.593][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:09.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.595][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:09.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:09.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.601][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:09.602][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:09.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.605][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.606][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:09.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:09.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.611][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:09.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.625][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:09.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.639][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:09.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.653][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:09.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.667][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:09.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.681][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:09.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:09.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:09.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:09.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:09.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:09.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:09.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:09.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:09.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:09.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:09.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:09.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:09.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:09.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:09.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:09.734][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.735][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.738][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.744][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.745][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.747][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.754][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.755][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.757][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.764][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.765][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.767][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.773][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.775][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.777][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.783][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.784][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.787][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.793][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:09.794][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:09.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.796][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.798][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:09.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:09.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.803][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:09.804][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:09.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.806][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.808][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:09.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:09.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.812][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:09.814][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:09.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.816][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:09.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:09.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.822][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:09.823][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:09.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.825][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:09.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:09.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.832][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:09.833][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:09.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.835][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.837][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:09.838][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:09.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.840][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:09.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:09.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.846][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:09.847][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:09.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.850][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:09.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:09.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.856][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:09.857][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:09.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.859][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:09.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:09.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.866][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:09.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:09.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.880][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:09.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:09.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.894][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:09.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:09.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.908][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:09.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:09.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.922][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:09.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:09.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.936][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:09.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:09.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:09.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:09.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:09.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:09.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:09.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:09.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:09.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:09.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:09.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:09.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:10.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:10.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:10.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:10.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:10.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:10.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:10.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:10.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:10.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:10.021][self$createEntryFromContent] Accession numbers: 172645198, 172645159, 172645048.
biodb.DEBUG[2025-02-08 16:05:10.022][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:10.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:10.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:10.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:10.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:10.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:10.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:10.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:10.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.046][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.047][private$selectFields]
biodb.TRACE[2025-02-08 16:05:10.049][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:10.050][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:10.051][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.052][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.053][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.055][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.056][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.058][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.060][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.061][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.062][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.063][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.064][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.067][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.068][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:10.069][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.083][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645198].
biodb.DEBUG[2025-02-08 16:05:10.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:10.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:10.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:10.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:10.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:10.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:10.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:10.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.107][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.108][private$selectFields]
biodb.TRACE[2025-02-08 16:05:10.109][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:10.111][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:10.112][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.113][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.114][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.116][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.117][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.119][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.121][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.122][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.123][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.124][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.125][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.128][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.129][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:10.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.144][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645159].
biodb.DEBUG[2025-02-08 16:05:10.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:10.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:10.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:10.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:10.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:10.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:10.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:10.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.169][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.170][private$selectFields]
biodb.TRACE[2025-02-08 16:05:10.171][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:10.172][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:10.174][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.175][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.176][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.178][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.180][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.181][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.183][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.184][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.185][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.186][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.188][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.190][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.191][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:10.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.207][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645048].
biodb.DEBUG[2025-02-08 16:05:10.208][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:10.209][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:10.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:10.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:10.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:10.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:10.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:10.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:10.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:10.255][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:10.259][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:10.260][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-08 16:05:10.262][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:10.264][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-08 16:05:10.267][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:10.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:10.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:10.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:10.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:10.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:10.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:10.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:10.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.292][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.293][private$selectFields]
biodb.TRACE[2025-02-08 16:05:10.294][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:10.295][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:10.296][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.297][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.298][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.301][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.302][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.303][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.305][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.306][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.308][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.309][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.310][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.312][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.313][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:10.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.329][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-08 16:05:10.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:10.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:10.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:10.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:10.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:10.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:10.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:10.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.353][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.354][private$selectFields]
biodb.TRACE[2025-02-08 16:05:10.355][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:10.357][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:10.358][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.359][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.360][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.362][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.364][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.365][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.367][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.368][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.370][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.371][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.372][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.374][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.375][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:10.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.391][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-02-08 16:05:10.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:10.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:10.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:10.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:10.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:10.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:10.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:10.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.422][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.423][private$selectFields]
biodb.TRACE[2025-02-08 16:05:10.424][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:10.425][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:10.426][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.427][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.429][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.431][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.432][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.433][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.436][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.437][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.438][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.439][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.440][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.443][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.444][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:10.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.461][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172593299].
biodb.DEBUG[2025-02-08 16:05:10.462][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:10.463][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:10.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:10.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:10.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:10.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:10.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:10.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:10.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:10.485][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:10.488][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:10.490][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-02-08 16:05:10.491][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:10.494][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-02-08 16:05:10.496][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:10.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:10.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:10.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:10.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:10.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:10.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:10.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:10.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.520][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.521][private$selectFields]
biodb.TRACE[2025-02-08 16:05:10.522][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:10.524][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:10.525][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.526][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.527][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.529][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.531][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.532][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.534][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.535][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.536][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.538][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.539][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.541][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.542][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:10.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.553][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.558][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:05:10.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:10.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:10.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:10.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:10.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:10.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:10.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:10.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.582][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.583][private$selectFields]
biodb.TRACE[2025-02-08 16:05:10.584][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:10.585][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:10.586][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.588][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.589][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.591][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.592][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.594][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.596][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.597][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.598][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.599][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.601][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.603][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.604][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:10.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.620][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2025-02-08 16:05:10.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:10.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:10.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:10.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:10.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:10.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:10.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:10.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.644][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.645][private$selectFields]
biodb.TRACE[2025-02-08 16:05:10.646][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:10.647][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:10.648][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.650][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.651][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.653][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.654][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.656][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.658][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.659][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.660][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:10.661][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.663][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.665][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.666][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:10.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:10.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:10.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:10.682][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2025-02-08 16:05:10.683][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:10.684][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:10.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:10.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:10.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:10.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:10.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:10.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:10.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:10.731][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:10.734][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:05:10.736][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:05:10.738][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-08 16:05:10.816][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:05:10.817][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:05:10.819][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:05:10.820][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:05:10.871][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:05:10.873][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2025-02-08 16:05:10.878][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2025-02-08 16:05:10.881][private$loadEntries] Creating entries from ids [3]: "130004307, 172638764, 172638763".
biodb.DEBUG[2025-02-08 16:05:10.882][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-08 16:05:10.884][cch$loadFileContent] Trying to load 3 files from cache: [3]: "130004307, 172638764, 172638763".
biodb.TRACE[2025-02-08 16:05:10.885][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-02-08 16:05:10.887][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:05:10.888][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:05:10.889][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:05:10.890][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:05:10.891][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-08 16:05:10.893][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-02-08 16:05:10.895][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/130004307,172638764,172638763/XML".
biodb.DEBUG[2025-02-08 16:05:10.897][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:05:10.898][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:05:10.900][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/130004307,172638764,172638763/XML".
biodb.TRACE[2025-02-08 16:05:11.012][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/130004307,172638764,172638763/XML).
biodb.TRACE[2025-02-08 16:05:11.117][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/130004307.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172638764.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172638763.xml"
biodb.DEBUG[2025-02-08 16:05:11.122][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:05:11.123][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-08 16:05:11.125][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:05:11.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:11.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:11.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:11.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:11.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:11.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:11.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:11.142][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.143][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.145][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.152][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.153][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.155][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.162][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.163][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.165][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.171][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.173][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.175][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.189][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.191][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.193][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.199][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.201][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.203][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.209][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:11.211][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:11.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.213][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.214][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:11.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:11.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.219][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:11.220][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:11.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.223][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.224][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:11.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:11.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.229][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:11.230][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:11.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.233][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:11.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:11.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.239][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:11.240][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:11.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.242][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:11.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:11.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.249][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:11.250][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:11.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.252][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.254][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:11.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:11.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.258][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:11.260][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:11.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.262][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:11.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:11.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.268][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:11.270][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:11.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.272][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.273][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:11.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:11.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.278][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:11.279][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:11.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.281][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.283][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:11.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:11.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.288][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:11.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.302][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:11.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.316][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:11.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.330][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:11.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.344][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:11.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:11.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:11.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:11.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:11.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:11.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:11.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:11.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:11.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:11.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:11.413][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.414][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.416][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.422][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.424][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.426][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.432][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.433][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.436][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.442][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.443][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.445][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.453][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.455][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.457][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.463][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.464][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.467][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.473][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:11.474][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:11.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.476][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.478][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:11.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:11.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.483][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:11.484][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:11.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.486][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.488][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:11.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:11.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.492][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:11.494][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:11.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.496][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:11.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:11.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.502][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:11.503][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:11.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.506][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:11.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:11.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.512][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:11.513][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:11.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.515][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.517][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:11.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:11.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.522][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:11.523][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:11.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.525][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:11.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:11.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.532][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:11.533][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:11.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.535][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.537][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:11.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:11.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.542][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:11.543][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:11.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.545][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:11.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:11.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.551][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:11.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.566][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:11.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.580][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:11.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.600][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:11.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.614][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:11.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.628][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:11.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:11.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:11.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:11.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:11.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:11.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:11.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:11.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:11.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:11.681][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.682][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.685][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.691][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.692][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.694][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.701][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.702][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.704][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.711][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.712][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.714][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.721][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.722][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.724][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.730][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.732][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.734][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.740][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:11.741][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:11.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.744][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.745][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:11.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:11.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.750][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:11.751][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:11.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.753][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:11.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:11.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.760][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:11.761][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:11.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.763][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:11.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:11.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.770][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:11.771][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:11.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.773][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:11.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:11.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.780][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:11.781][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:11.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.783][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.785][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:11.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:11.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.789][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:11.791][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:11.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.793][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:11.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:11.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.799][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:11.800][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:11.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.802][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:11.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:11.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.809][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:11.810][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:11.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.812][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.814][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:11.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:11.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.819][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:11.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:11.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.833][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:11.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:11.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.849][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:11.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:11.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.863][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:11.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:11.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.877][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:11.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:11.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:11.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:11.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.910][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:11.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:11.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:11.972][self$createEntryFromContent] Accession numbers: 130004307, 172638764, 172638763.
biodb.DEBUG[2025-02-08 16:05:11.974][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:11.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:11.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:11.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:11.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:11.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:11.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:11.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:11.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:11.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:11.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:11.998][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:11.999][private$selectFields]
biodb.TRACE[2025-02-08 16:05:12.000][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:12.002][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:12.003][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:12.004][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.005][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.013][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.014][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.015][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.017][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.018][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:12.019][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:12.021][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.022][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.024][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.025][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:12.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.041][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130004307].
biodb.DEBUG[2025-02-08 16:05:12.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:12.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:12.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:12.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:12.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:12.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:12.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:12.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.065][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:12.066][private$selectFields]
biodb.TRACE[2025-02-08 16:05:12.067][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:12.068][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:12.069][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:12.071][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.072][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.074][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.075][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.076][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.079][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.080][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:12.081][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:12.082][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.083][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.085][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.087][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:12.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.102][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638764].
biodb.DEBUG[2025-02-08 16:05:12.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:12.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:12.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:12.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:12.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:12.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:12.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:12.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.126][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:12.127][private$selectFields]
biodb.TRACE[2025-02-08 16:05:12.128][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:12.129][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:12.131][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:12.132][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.133][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.135][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.136][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.138][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.140][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.141][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:12.142][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:12.143][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.144][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.147][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.148][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:12.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.164][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638763].
biodb.DEBUG[2025-02-08 16:05:12.165][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:12.166][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:12.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:12.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:12.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:12.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:12.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:12.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:12.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:12.187][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:12.191][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:05:12.192][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:05:12.194][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-08 16:05:12.269][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:05:12.271][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:05:12.272][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:05:12.274][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:05:12.327][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:05:12.330][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2025-02-08 16:05:12.334][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2025-02-08 16:05:12.337][private$loadEntries] Creating entries from ids [1]: "172643109".
biodb.DEBUG[2025-02-08 16:05:12.338][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:05:12.340][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172643109".
biodb.TRACE[2025-02-08 16:05:12.341][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-08 16:05:12.343][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:05:12.344][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:05:12.345][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:05:12.346][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:05:12.348][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-08 16:05:12.349][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-08 16:05:12.351][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172643109/XML".
biodb.DEBUG[2025-02-08 16:05:12.353][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:05:12.354][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:05:12.356][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172643109/XML".
biodb.TRACE[2025-02-08 16:05:12.470][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172643109/XML).
biodb.TRACE[2025-02-08 16:05:12.553][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172643109.xml"
biodb.DEBUG[2025-02-08 16:05:12.556][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:05:12.557][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:05:12.559][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:05:12.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:12.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:12.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:12.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:12.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:12.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:12.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:12.576][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:12.577][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:12.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.579][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:12.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:12.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.586][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:12.587][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:12.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.589][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:12.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:12.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.595][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:12.597][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:12.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.599][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:12.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:12.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.605][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:12.606][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:12.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.609][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:12.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:12.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.615][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:12.616][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:12.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.618][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:12.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:12.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.625][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:12.626][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:12.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.628][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:12.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:12.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.634][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:12.636][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:12.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.638][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.639][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:12.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:12.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.644][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:12.645][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:12.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.648][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.649][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:12.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:12.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.654][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:12.655][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:12.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.657][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:12.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:12.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.664][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:12.665][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:12.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.667][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:12.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:12.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.673][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:12.675][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:12.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.677][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.678][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:12.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:12.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.683][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:12.684][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:12.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.687][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:12.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:12.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.693][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:12.694][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:12.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.697][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:12.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:12.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.703][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:12.704][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:12.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.706][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.708][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:12.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:12.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.713][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:12.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:12.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:12.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:12.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:12.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:12.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.727][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:12.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:12.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:12.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:12.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:12.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:12.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.750][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:12.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:12.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:12.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:12.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:12.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:12.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.764][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:12.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:12.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:12.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:12.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:12.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:12.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.778][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:12.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:12.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:12.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:12.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:12.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:12.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.792][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:12.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:12.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:12.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:12.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:12.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:12.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:12.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:12.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:12.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:12.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:12.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:12.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:12.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:12.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:12.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:12.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:12.842][self$createEntryFromContent] Accession numbers: 172643109.
biodb.DEBUG[2025-02-08 16:05:12.844][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:12.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:12.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:12.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:12.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:12.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:12.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:12.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:12.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.868][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:12.869][private$selectFields]
biodb.TRACE[2025-02-08 16:05:12.870][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:12.871][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:12.872][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:12.873][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.874][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.877][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.878][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.879][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.881][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.882][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:12.883][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:12.885][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.886][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.888][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.889][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:12.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.904][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172643109].
biodb.DEBUG[2025-02-08 16:05:12.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:12.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:12.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:12.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:12.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:12.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:12.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:12.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.928][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:12.930][private$selectFields]
biodb.TRACE[2025-02-08 16:05:12.931][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:12.932][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:12.933][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:12.934][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.935][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.937][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.939][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.940][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.942][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.943][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:12.944][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:12.945][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.947][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.949][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.950][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:12.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.965][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:05:12.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:12.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:12.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:12.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:12.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:12.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:12.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:12.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.989][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:12.990][private$selectFields]
biodb.TRACE[2025-02-08 16:05:12.991][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:12.992][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:12.993][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:12.995][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.996][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:12.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:12.998][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:12.999][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.000][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.003][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.004][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.005][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.006][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.007][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.009][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.011][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:13.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.026][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-08 16:05:13.027][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:13.028][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:13.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:13.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:13.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:13.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:13.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:13.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:13.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:13.074][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:13.077][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:13.078][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2025-02-08 16:05:13.080][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:13.082][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2025-02-08 16:05:13.084][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:13.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:13.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:13.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:13.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:13.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:13.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:13.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:13.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.127][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.128][private$selectFields]
biodb.TRACE[2025-02-08 16:05:13.134][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:13.136][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:13.137][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.138][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.139][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.141][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.143][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.144][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.146][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.147][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.148][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.149][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.151][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.153][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.154][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:13.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.169][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645658].
biodb.DEBUG[2025-02-08 16:05:13.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:13.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:13.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:13.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:13.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:13.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:13.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:13.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.193][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.194][private$selectFields]
biodb.TRACE[2025-02-08 16:05:13.195][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:13.196][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:13.197][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.198][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.199][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.201][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.202][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.204][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.206][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.207][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.208][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.209][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.210][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.212][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.214][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:13.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.229][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [75629699].
biodb.DEBUG[2025-02-08 16:05:13.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:13.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:13.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:13.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:13.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:13.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:13.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:13.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.254][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.256][private$selectFields]
biodb.TRACE[2025-02-08 16:05:13.257][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:13.258][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:13.259][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.260][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.261][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.264][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.265][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.266][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.268][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.269][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.271][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.272][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.273][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.275][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.276][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:13.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.292][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639225].
biodb.DEBUG[2025-02-08 16:05:13.293][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:13.294][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:13.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:13.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:13.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:13.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:13.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:13.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:13.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:13.315][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:13.318][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:13.320][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2025-02-08 16:05:13.321][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:13.324][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2025-02-08 16:05:13.326][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:13.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:13.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:13.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:13.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:13.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:13.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:13.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:13.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.351][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.352][private$selectFields]
biodb.TRACE[2025-02-08 16:05:13.353][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:13.354][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:13.355][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.356][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.359][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.361][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.362][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.364][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.365][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.366][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.367][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.369][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.371][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.372][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:13.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.388][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645198].
biodb.DEBUG[2025-02-08 16:05:13.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:13.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:13.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:13.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:13.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:13.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:13.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:13.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.412][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.413][private$selectFields]
biodb.TRACE[2025-02-08 16:05:13.414][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:13.415][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:13.416][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.417][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.418][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.420][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.422][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.423][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.425][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.426][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.427][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.428][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.430][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.432][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.433][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:13.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.448][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645159].
biodb.DEBUG[2025-02-08 16:05:13.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:13.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:13.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:13.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:13.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:13.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:13.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:13.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.472][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.473][private$selectFields]
biodb.TRACE[2025-02-08 16:05:13.474][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:13.476][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:13.477][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.478][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.479][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.481][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.482][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.484][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.487][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.488][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.490][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.492][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.493][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.495][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.497][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:13.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.512][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645048].
biodb.DEBUG[2025-02-08 16:05:13.514][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:13.515][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:13.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:13.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:13.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:13.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:13.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:13.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:13.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:13.564][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:13.567][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:13.569][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-08 16:05:13.570][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:13.573][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-08 16:05:13.575][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:13.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:13.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:13.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:13.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:13.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:13.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:13.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:13.590][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.599][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.600][private$selectFields]
biodb.TRACE[2025-02-08 16:05:13.601][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:13.602][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:13.603][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.604][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.606][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.608][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.609][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.610][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.612][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.614][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.615][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.616][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.617][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.619][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.620][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:13.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.636][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-08 16:05:13.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:13.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:13.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:13.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:13.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:13.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:13.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:13.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.660][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.661][private$selectFields]
biodb.TRACE[2025-02-08 16:05:13.662][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:13.663][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:13.664][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.665][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.667][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.669][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.670][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.671][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.673][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.675][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.676][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.677][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.678][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.680][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.681][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:13.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.697][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-02-08 16:05:13.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:13.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:13.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:13.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:13.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:13.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:13.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:13.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.721][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.722][private$selectFields]
biodb.TRACE[2025-02-08 16:05:13.723][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:13.724][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:13.725][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.726][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.727][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.730][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.731][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.732][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.734][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.735][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.737][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.738][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.739][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.741][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.742][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:13.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.758][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172593299].
biodb.DEBUG[2025-02-08 16:05:13.759][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:13.760][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:13.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:13.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:13.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:13.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:13.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:13.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:13.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:13.781][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:13.784][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:13.785][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-02-08 16:05:13.787][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:13.789][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-02-08 16:05:13.791][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:13.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:13.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:13.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:13.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:13.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:13.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:13.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:13.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.811][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.815][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.816][private$selectFields]
biodb.TRACE[2025-02-08 16:05:13.817][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:13.819][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:13.820][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.821][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.822][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.824][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.825][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.827][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.829][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.830][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.831][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.832][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.833][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.836][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.837][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:13.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.852][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:05:13.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:13.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:13.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:13.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:13.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:13.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:13.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:13.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.871][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.876][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.877][private$selectFields]
biodb.TRACE[2025-02-08 16:05:13.878][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:13.879][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:13.880][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.882][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.883][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.885][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.886][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.887][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.889][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.891][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.892][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.893][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.894][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.896][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.897][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:13.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.913][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2025-02-08 16:05:13.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:13.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:13.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:13.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:13.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:13.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:13.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:13.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.937][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.938][private$selectFields]
biodb.TRACE[2025-02-08 16:05:13.939][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:13.940][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:13.941][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.942][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.944][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.946][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.947][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.948][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.951][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.952][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.958][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:13.959][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.961][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.963][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.964][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:13.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:13.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:13.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:13.979][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2025-02-08 16:05:13.980][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:13.981][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:14.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:14.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:14.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:14.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:14.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:14.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:14.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:14.026][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:14.029][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:14.031][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2025-02-08 16:05:14.033][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:14.035][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2025-02-08 16:05:14.037][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:14.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:14.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:14.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:14.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:14.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:14.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:14.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:14.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.061][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.062][private$selectFields]
biodb.TRACE[2025-02-08 16:05:14.063][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:14.064][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:14.065][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.066][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.068][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.070][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.071][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.072][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.074][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.076][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.077][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.078][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.079][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.081][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.082][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:14.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.098][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130004307].
biodb.DEBUG[2025-02-08 16:05:14.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:14.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:14.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:14.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:14.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:14.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:14.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:14.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.122][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.123][private$selectFields]
biodb.TRACE[2025-02-08 16:05:14.124][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:14.125][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:14.126][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.127][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.128][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.131][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.132][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.133][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.135][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.136][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.138][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.139][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.140][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.142][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.143][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:14.145][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.159][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638764].
biodb.DEBUG[2025-02-08 16:05:14.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:14.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:14.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:14.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:14.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:14.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:14.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:14.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.183][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.184][private$selectFields]
biodb.TRACE[2025-02-08 16:05:14.185][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:14.186][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:14.187][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.188][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.190][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.192][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.193][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.194][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.197][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.198][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.199][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.200][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.201][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.203][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.205][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:14.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.220][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638763].
biodb.DEBUG[2025-02-08 16:05:14.222][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:14.223][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:14.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:14.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:14.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:14.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:14.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:14.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:14.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:14.244][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:14.247][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:14.249][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2025-02-08 16:05:14.251][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:14.253][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2025-02-08 16:05:14.255][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:14.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:14.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:14.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:14.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:14.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:14.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:14.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:14.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.280][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.281][private$selectFields]
biodb.TRACE[2025-02-08 16:05:14.282][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:14.283][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:14.284][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.285][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.287][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.289][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.290][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.291][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.293][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.294][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.296][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.297][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.298][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.300][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.301][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:14.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.317][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172643109].
biodb.DEBUG[2025-02-08 16:05:14.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:14.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:14.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:14.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:14.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:14.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:14.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:14.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.336][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.340][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.342][private$selectFields]
biodb.TRACE[2025-02-08 16:05:14.343][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:14.344][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:14.345][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.346][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.347][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.349][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.351][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.352][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.354][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.355][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.356][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.357][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.359][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.361][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.362][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:14.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.383][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:05:14.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:14.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:14.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:14.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:14.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:14.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:14.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:14.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.407][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.408][private$selectFields]
biodb.TRACE[2025-02-08 16:05:14.409][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:14.410][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:14.411][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.412][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.413][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.416][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.417][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.418][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.420][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.421][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.422][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:14.423][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.425][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.427][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.428][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:14.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:14.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.443][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-08 16:05:14.444][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:14.445][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-08 16:05:14.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:14.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:14.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:14.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:14.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:14.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:14.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:14.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:14.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:14.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:14.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:14.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:14.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:14.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:14.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:14.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:14.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:14.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:14.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:14.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:14.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:14.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:14.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:14.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:14.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:14.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:14.543][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:14.547][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:05:14.548][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:05:14.550][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-08 16:05:14.857][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:05:14.859][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:05:14.861][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:05:14.863][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:05:14.920][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:05:14.923][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2025-02-08 16:05:14.929][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2025-02-08 16:05:14.932][private$loadEntries] Creating entries from ids [2]: "172645518, 172641159".
biodb.DEBUG[2025-02-08 16:05:14.933][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-08 16:05:14.935][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172645518, 172641159".
biodb.TRACE[2025-02-08 16:05:14.936][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-02-08 16:05:14.938][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:05:14.939][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:05:14.940][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:05:14.941][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:05:14.943][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-08 16:05:14.944][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-02-08 16:05:14.946][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172645518,172641159/XML".
biodb.DEBUG[2025-02-08 16:05:14.948][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:05:14.949][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:05:14.951][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172645518,172641159/XML".
biodb.TRACE[2025-02-08 16:05:15.030][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172645518,172641159/XML).
biodb.TRACE[2025-02-08 16:05:15.120][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172645518.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172641159.xml"
biodb.DEBUG[2025-02-08 16:05:15.124][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:05:15.126][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-08 16:05:15.127][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:05:15.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:15.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:15.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:15.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:15.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:15.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:15.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:15.145][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:15.146][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:15.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.148][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:15.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:15.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.155][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:15.156][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:15.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.158][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:15.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:15.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.164][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:15.166][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:15.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.168][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:15.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:15.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.174][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:15.175][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:15.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.178][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:15.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:15.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.184][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:15.185][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:15.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.187][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:15.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:15.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.194][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:15.195][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:15.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.197][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:15.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:15.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.203][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:15.205][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:15.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.207][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.208][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:15.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:15.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.213][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:15.214][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:15.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.218][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:15.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:15.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.223][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:15.224][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:15.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.226][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:15.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:15.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.233][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:15.234][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:15.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.236][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:15.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:15.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.242][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:15.244][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:15.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.246][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.247][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:15.248][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:15.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.251][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:15.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:15.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.257][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:15.258][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:15.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.260][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.262][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:15.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:15.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.267][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:15.268][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:15.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.270][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.272][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:15.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:15.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.277][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:15.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:15.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:15.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:15.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:15.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:15.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.291][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:15.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:15.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:15.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:15.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:15.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:15.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.305][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:15.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:15.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:15.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:15.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:15.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:15.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.319][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:15.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:15.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:15.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:15.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:15.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:15.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.343][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:15.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:15.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:15.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:15.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:15.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:15.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:15.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:15.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:15.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:15.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:15.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:15.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:15.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:15.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:15.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:15.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:15.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:15.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:15.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:15.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:15.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:15.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:15.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:15.411][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:15.412][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:15.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.414][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:15.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:15.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.421][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:15.422][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:15.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.424][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:15.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:15.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.431][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:15.432][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:15.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.434][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:15.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:15.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.440][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:15.442][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:15.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.444][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:15.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:15.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.450][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:15.451][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:15.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.453][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:15.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:15.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.460][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:15.461][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:15.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.463][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:15.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:15.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.469][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:15.471][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:15.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.473][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.474][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:15.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:15.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.479][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:15.480][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:15.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.483][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:15.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:15.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.489][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:15.491][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:15.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.494][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:15.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:15.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.500][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:15.501][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:15.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.503][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:15.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:15.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.510][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:15.511][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:15.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.513][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.515][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:15.516][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:15.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.518][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:15.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:15.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.524][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:15.526][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:15.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.528][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.529][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:15.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:15.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.534][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:15.535][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:15.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.538][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.539][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:15.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:15.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.544][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:15.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:15.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:15.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:15.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:15.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:15.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.558][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:15.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:15.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:15.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:15.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:15.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:15.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.572][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:15.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:15.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:15.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:15.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:15.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:15.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.586][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:15.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:15.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:15.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:15.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:15.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:15.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.600][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:15.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:15.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:15.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:15.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:15.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:15.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.614][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:15.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:15.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:15.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:15.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:15.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:15.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:15.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:15.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:15.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:15.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:15.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:15.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:15.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:15.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:15.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:15.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:15.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:15.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:15.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:15.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:15.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:15.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:15.680][self$createEntryFromContent] Accession numbers: 172645518, 172641159.
biodb.DEBUG[2025-02-08 16:05:15.681][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:15.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:15.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:15.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:15.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:15.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:15.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:15.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:15.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.706][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:15.707][private$selectFields]
biodb.TRACE[2025-02-08 16:05:15.708][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:15.709][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:15.710][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:15.711][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.713][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.715][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.716][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.717][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.720][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.721][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:15.722][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:15.723][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.724][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.727][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.728][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:15.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.734][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.749][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645658].
biodb.DEBUG[2025-02-08 16:05:15.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:15.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:15.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:15.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:15.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:15.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:15.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:15.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.772][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:15.774][private$selectFields]
biodb.TRACE[2025-02-08 16:05:15.775][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:15.776][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:15.777][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:15.778][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.779][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.781][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.783][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.784][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.786][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.787][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:15.788][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:15.789][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.791][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.793][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.794][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:15.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.816][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645518].
biodb.DEBUG[2025-02-08 16:05:15.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:15.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:15.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:15.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:15.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:15.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:15.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:15.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.841][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:15.842][private$selectFields]
biodb.TRACE[2025-02-08 16:05:15.843][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:15.844][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:15.845][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:15.846][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.848][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.850][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.851][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.852][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.854][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.856][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:15.857][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:15.858][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.859][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.861][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.862][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:15.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:15.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:15.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:15.878][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641159].
biodb.DEBUG[2025-02-08 16:05:15.879][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:15.880][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:15.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:15.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:15.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:15.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:15.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:15.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:15.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:15.901][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:15.905][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:05:15.906][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:05:15.908][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-08 16:05:15.981][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:05:15.982][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:05:15.984][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:05:15.986][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:05:16.036][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:05:16.039][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2025-02-08 16:05:16.045][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2025-02-08 16:05:16.049][private$loadEntries] Creating entries from ids [1]: "172643930".
biodb.DEBUG[2025-02-08 16:05:16.050][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:05:16.052][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172643930".
biodb.TRACE[2025-02-08 16:05:16.053][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-08 16:05:16.055][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:05:16.056][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:05:16.057][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:05:16.059][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:05:16.060][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-08 16:05:16.061][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-08 16:05:16.063][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172643930/XML".
biodb.DEBUG[2025-02-08 16:05:16.066][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:05:16.067][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:05:16.068][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172643930/XML".
biodb.TRACE[2025-02-08 16:05:16.145][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172643930/XML).
biodb.TRACE[2025-02-08 16:05:16.251][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172643930.xml"
biodb.DEBUG[2025-02-08 16:05:16.253][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:05:16.255][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:05:16.256][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:05:16.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:16.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:16.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:16.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:16.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:16.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:16.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:16.274][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:16.275][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:16.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.277][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:16.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:16.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.284][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:16.285][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:16.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.287][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:16.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:16.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.293][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:16.295][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:16.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.297][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:16.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:16.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.303][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:16.305][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:16.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.307][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:16.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:16.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.313][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:16.314][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:16.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.316][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:16.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:16.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.323][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:16.324][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:16.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.326][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:16.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:16.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.332][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:16.334][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:16.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.336][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.337][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:05:16.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:16.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.342][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:16.343][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:16.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.346][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.347][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:16.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:16.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.352][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:16.353][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:16.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.355][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:16.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:16.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.361][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:16.363][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:16.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.365][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:16.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:16.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.371][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:16.372][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:16.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.375][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.376][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:16.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:16.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.381][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:16.382][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:16.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.384][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:05:16.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:16.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.391][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:16.392][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:16.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.394][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.396][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:16.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:16.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.400][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:16.402][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:16.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.404][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:16.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:16.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.410][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:05:16.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:16.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:16.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:16.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:16.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:16.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.424][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:05:16.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:16.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:16.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:16.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:16.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:16.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.447][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:05:16.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:16.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:16.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:16.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:16.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:16.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.461][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:05:16.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:16.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:16.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:16.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:16.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:16.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.475][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:05:16.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:16.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:16.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:16.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:16.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:16.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:16.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:16.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:16.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:16.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:16.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:16.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:16.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:16.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:16.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:16.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:16.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:16.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:16.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:16.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:16.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:16.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:16.542][self$createEntryFromContent] Accession numbers: 172643930.
biodb.DEBUG[2025-02-08 16:05:16.543][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:16.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:16.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:16.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:16.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:16.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:16.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:16.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:16.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.567][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.568][private$selectFields]
biodb.TRACE[2025-02-08 16:05:16.570][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:16.571][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:16.572][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.573][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.574][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.576][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.577][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.579][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.581][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.582][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.583][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.584][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.585][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.588][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.589][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:16.590][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.604][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172643930].
biodb.DEBUG[2025-02-08 16:05:16.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:16.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:16.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:16.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:16.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:16.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:16.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:16.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.629][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.630][private$selectFields]
biodb.TRACE[2025-02-08 16:05:16.631][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:16.632][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:16.633][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.634][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.635][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.638][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.639][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.640][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.642][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.643][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.645][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.646][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.647][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.649][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.650][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:16.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.666][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:05:16.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:16.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:16.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:16.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:16.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:16.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:16.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:16.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.689][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.691][private$selectFields]
biodb.TRACE[2025-02-08 16:05:16.692][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:16.693][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:16.694][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.695][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.696][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.698][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.700][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.701][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.703][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.704][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.705][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.706][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.708][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.710][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.711][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:16.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.726][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-08 16:05:16.727][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:16.729][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:16.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:16.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:16.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:16.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:16.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:16.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:16.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:16.775][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:16.778][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:16.779][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-08 16:05:16.781][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:16.783][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-08 16:05:16.786][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:16.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:16.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:16.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:16.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:16.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:16.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:16.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:16.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.810][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.811][private$selectFields]
biodb.TRACE[2025-02-08 16:05:16.812][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:16.813][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:16.815][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.816][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.817][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.819][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.820][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.822][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.824][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.825][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.826][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.827][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.828][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.831][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.832][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:16.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.847][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-02-08 16:05:16.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:16.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:16.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:16.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:16.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:16.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:16.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:16.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.877][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.878][private$selectFields]
biodb.TRACE[2025-02-08 16:05:16.880][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:16.881][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:16.882][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.883][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.884][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.886][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.888][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.889][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.891][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.892][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.893][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.894][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.896][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.898][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.899][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:16.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.914][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622621].
biodb.DEBUG[2025-02-08 16:05:16.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:16.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:16.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:16.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:16.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:16.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:16.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:16.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.938][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.939][private$selectFields]
biodb.TRACE[2025-02-08 16:05:16.940][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:16.941][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:16.942][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.943][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.945][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.947][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.948][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.949][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.951][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.953][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.954][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:16.955][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.956][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.958][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.959][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:16.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:16.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:16.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:16.975][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172602027].
biodb.DEBUG[2025-02-08 16:05:16.976][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:16.977][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:16.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:16.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:16.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:16.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:16.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:16.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:16.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:16.998][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:17.001][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:17.003][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-02-08 16:05:17.004][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:17.007][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-02-08 16:05:17.009][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:17.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:17.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:17.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:17.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:17.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:17.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:17.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:17.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.033][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.034][private$selectFields]
biodb.TRACE[2025-02-08 16:05:17.036][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:17.037][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:17.038][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.039][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.040][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.042][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.044][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.045][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.047][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.048][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.049][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.050][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.052][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.054][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.055][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:17.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.071][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:05:17.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:17.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:17.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:17.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:17.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:17.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:17.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:17.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.095][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.096][private$selectFields]
biodb.TRACE[2025-02-08 16:05:17.097][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:17.098][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:17.099][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.100][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.101][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.103][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.105][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.106][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.108][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.109][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.110][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.111][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.113][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.115][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.116][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:17.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.122][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.131][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-08 16:05:17.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:17.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:17.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:17.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:17.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:17.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:17.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:17.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.151][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.156][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.157][private$selectFields]
biodb.TRACE[2025-02-08 16:05:17.158][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:17.159][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:17.160][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.161][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.162][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.165][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.166][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.167][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.169][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.170][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.171][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.173][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.174][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.176][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.177][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:17.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.192][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-02-08 16:05:17.194][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:17.195][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:17.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:17.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:17.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:17.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:17.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:17.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:17.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:17.239][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:17.243][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:05:17.244][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:05:17.246][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-08 16:05:17.312][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:05:17.313][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:05:17.315][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:05:17.316][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:05:17.378][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:05:17.381][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2025-02-08 16:05:17.387][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2025-02-08 16:05:17.397][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:17.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:17.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:17.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:17.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:17.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:17.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:17.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:17.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.421][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.422][private$selectFields]
biodb.TRACE[2025-02-08 16:05:17.423][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:17.424][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:17.425][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.426][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.428][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.430][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.431][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.432][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.435][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.436][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.437][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.438][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.439][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.441][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.442][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:17.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.458][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130004307].
biodb.DEBUG[2025-02-08 16:05:17.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:17.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:17.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:17.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:17.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:17.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:17.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:17.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.481][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.482][private$selectFields]
biodb.TRACE[2025-02-08 16:05:17.483][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:17.484][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:17.486][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.487][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.488][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.490][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.491][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.492][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.495][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.497][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.498][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.500][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.501][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.504][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.505][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:17.506][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.521][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638764].
biodb.DEBUG[2025-02-08 16:05:17.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:17.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:17.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:17.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:17.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:17.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:17.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:17.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.550][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.552][private$selectFields]
biodb.TRACE[2025-02-08 16:05:17.553][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:17.554][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:17.555][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.556][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.558][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.560][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.561][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.562][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.564][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.566][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.567][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.568][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.569][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.572][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.573][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:17.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.589][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638763].
biodb.DEBUG[2025-02-08 16:05:17.590][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:17.591][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:17.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:17.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:17.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:17.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:17.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:17.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:17.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:17.612][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:17.616][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:05:17.617][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:05:17.619][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-08 16:05:17.691][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:05:17.692][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:05:17.694][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:05:17.695][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:05:17.759][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:05:17.763][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2025-02-08 16:05:17.767][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2025-02-08 16:05:17.770][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:17.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:17.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:17.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:17.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:17.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:17.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:17.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:17.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.795][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.796][private$selectFields]
biodb.TRACE[2025-02-08 16:05:17.797][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:17.798][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:17.800][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.801][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.802][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.804][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.805][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.807][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.809][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.810][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.811][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.812][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.814][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.816][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.817][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:17.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.827][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.832][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645198].
biodb.DEBUG[2025-02-08 16:05:17.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:17.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:17.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:17.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:17.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:17.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:17.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:17.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.857][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.858][private$selectFields]
biodb.TRACE[2025-02-08 16:05:17.859][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:17.860][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:17.861][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.862][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.863][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.866][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.867][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.868][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.870][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.871][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.872][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.874][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.875][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.877][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.878][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:17.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.889][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.894][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645159].
biodb.DEBUG[2025-02-08 16:05:17.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:17.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:17.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:17.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:17.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:17.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:17.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:17.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.918][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.919][private$selectFields]
biodb.TRACE[2025-02-08 16:05:17.920][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:17.921][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:17.922][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.924][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.925][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.927][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.928][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.929][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.932][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.933][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.934][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:17.935][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.936][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.939][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.945][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:17.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:17.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:17.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:17.962][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645048].
biodb.DEBUG[2025-02-08 16:05:17.963][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:17.965][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:17.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:17.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:17.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:18.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:18.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:18.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:18.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:18.010][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:18.013][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:18.015][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2025-02-08 16:05:18.016][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:18.018][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2025-02-08 16:05:18.020][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:18.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:18.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:18.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:18.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:18.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:18.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:18.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:18.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.045][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.046][private$selectFields]
biodb.TRACE[2025-02-08 16:05:18.047][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:18.048][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:18.049][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.050][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.051][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.054][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.055][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.056][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.058][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.059][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.060][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.062][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.063][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.065][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.066][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:18.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.082][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645658].
biodb.DEBUG[2025-02-08 16:05:18.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:18.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:18.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:18.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:18.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:18.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:18.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:18.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.125][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.126][private$selectFields]
biodb.TRACE[2025-02-08 16:05:18.127][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:18.128][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:18.129][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.130][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.132][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.134][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.135][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.136][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.139][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.140][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.141][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.142][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.143][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.145][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.147][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:18.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.162][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645518].
biodb.DEBUG[2025-02-08 16:05:18.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:18.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:18.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:18.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:18.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:18.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:18.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:18.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.187][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.188][private$selectFields]
biodb.TRACE[2025-02-08 16:05:18.189][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:18.190][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:18.191][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.192][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.193][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.196][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.197][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.198][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.200][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.201][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.203][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.204][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.205][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.207][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.208][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:18.210][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.224][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641159].
biodb.DEBUG[2025-02-08 16:05:18.225][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:18.226][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:18.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:18.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:18.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:18.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:18.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:18.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:18.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:18.247][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:18.250][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:18.252][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2025-02-08 16:05:18.254][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:18.256][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2025-02-08 16:05:18.258][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:18.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:18.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:18.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:18.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:18.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:18.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:18.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:18.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.283][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.284][private$selectFields]
biodb.TRACE[2025-02-08 16:05:18.285][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:18.286][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:18.287][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.288][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.289][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.292][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.293][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.294][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.296][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.297][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.299][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.300][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.301][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.303][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.304][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:18.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.320][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172643930].
biodb.DEBUG[2025-02-08 16:05:18.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:18.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:18.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:18.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:18.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:18.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:18.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:18.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.350][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.351][private$selectFields]
biodb.TRACE[2025-02-08 16:05:18.352][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:18.353][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:18.354][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.355][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.356][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.359][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.360][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.361][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.363][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.364][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.366][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.367][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.368][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.370][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.371][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:18.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.387][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:05:18.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:18.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:18.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:18.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:18.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:18.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:18.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:18.401][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.410][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.412][private$selectFields]
biodb.TRACE[2025-02-08 16:05:18.413][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:18.414][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:18.415][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.416][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.417][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.419][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.421][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.422][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.424][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.425][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.426][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.427][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.429][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.431][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.432][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:18.433][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.447][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-08 16:05:18.448][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:18.450][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:18.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:18.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:18.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:18.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:18.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:18.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:18.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:18.495][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:18.499][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:18.501][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-08 16:05:18.503][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:18.506][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-08 16:05:18.508][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:18.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:18.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:18.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:18.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:18.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:18.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:18.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:18.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.533][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.534][private$selectFields]
biodb.TRACE[2025-02-08 16:05:18.535][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:18.536][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:18.537][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.538][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.539][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.542][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.543][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.544][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.546][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.548][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.549][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.550][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.551][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.553][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.554][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:18.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.570][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-02-08 16:05:18.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:18.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:18.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:18.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:18.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:18.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:18.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:18.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.589][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.594][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.595][private$selectFields]
biodb.TRACE[2025-02-08 16:05:18.596][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:18.597][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:18.599][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.600][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.601][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.603][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.604][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.606][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.608][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.609][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.610][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.611][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.613][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.615][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.616][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:18.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.631][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622621].
biodb.DEBUG[2025-02-08 16:05:18.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:18.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:18.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:18.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:18.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:18.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:18.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:18.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.656][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.657][private$selectFields]
biodb.TRACE[2025-02-08 16:05:18.658][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:18.659][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:18.660][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.661][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.662][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.665][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.666][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.667][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.669][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.670][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.672][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.673][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.674][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.676][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.677][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:18.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.693][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172602027].
biodb.DEBUG[2025-02-08 16:05:18.694][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:18.695][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:18.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:18.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:18.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:18.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:18.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:18.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:18.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:18.716][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:18.719][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:18.721][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-02-08 16:05:18.722][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:18.724][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-02-08 16:05:18.727][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:18.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:18.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:18.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:18.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:18.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:18.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:18.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:18.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.773][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.775][private$selectFields]
biodb.TRACE[2025-02-08 16:05:18.776][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:18.778][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:18.779][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.780][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.781][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.783][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.785][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.786][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.788][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.789][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.790][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.792][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.793][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.795][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.796][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:18.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.812][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:05:18.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:18.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:18.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:18.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:18.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:18.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:18.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:18.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.836][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.837][private$selectFields]
biodb.TRACE[2025-02-08 16:05:18.838][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:18.839][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:18.840][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.841][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.842][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.845][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.846][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.847][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.849][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.850][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.852][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.853][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.854][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.856][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.857][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:18.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.873][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-08 16:05:18.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:18.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:18.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:18.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:18.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:18.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:18.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:18.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.897][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.898][private$selectFields]
biodb.TRACE[2025-02-08 16:05:18.899][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:18.900][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:18.902][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.903][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.904][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.906][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.907][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.909][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.911][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.912][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.913][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:18.914][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.915][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.918][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.919][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:18.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:18.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:18.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:18.934][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-02-08 16:05:18.936][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:18.937][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:18.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:18.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:18.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:18.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:18.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:18.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:18.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:18.986][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:18.989][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:18.991][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2025-02-08 16:05:18.992][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:18.995][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2025-02-08 16:05:18.997][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:18.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:18.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:19.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:19.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:19.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:19.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:19.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:19.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.021][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.022][private$selectFields]
biodb.TRACE[2025-02-08 16:05:19.023][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:19.025][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:19.026][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.027][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.028][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.030][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.031][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.033][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.035][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.036][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.037][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.038][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.040][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.042][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.043][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:19.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.054][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.059][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130004307].
biodb.DEBUG[2025-02-08 16:05:19.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:19.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:19.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:19.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:19.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:19.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:19.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:19.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.083][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.084][private$selectFields]
biodb.TRACE[2025-02-08 16:05:19.085][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:19.086][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:19.087][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.088][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.090][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.092][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.093][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.094][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.096][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.098][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.099][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.100][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.101][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.103][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.105][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:19.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.120][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638764].
biodb.DEBUG[2025-02-08 16:05:19.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:19.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:19.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:19.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:19.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:19.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:19.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:19.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.144][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.145][private$selectFields]
biodb.TRACE[2025-02-08 16:05:19.146][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:19.147][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:19.149][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.150][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.151][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.153][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.154][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.156][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.158][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.159][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.160][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.161][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.163][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.165][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.166][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:19.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.182][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638763].
biodb.DEBUG[2025-02-08 16:05:19.183][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:19.184][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:19.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:19.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:19.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:19.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:19.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:19.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:19.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:19.211][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:19.214][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:19.215][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2025-02-08 16:05:19.217][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:19.219][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2025-02-08 16:05:19.221][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:19.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:19.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:19.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:19.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:19.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:19.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:19.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:19.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.246][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.247][private$selectFields]
biodb.TRACE[2025-02-08 16:05:19.248][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:19.249][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:19.250][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.251][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.253][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.255][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.256][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.257][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.259][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.260][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.262][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.263][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.264][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.266][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.267][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:19.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.283][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645198].
biodb.DEBUG[2025-02-08 16:05:19.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:19.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:19.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:19.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:19.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:19.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:19.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:19.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.307][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.308][private$selectFields]
biodb.TRACE[2025-02-08 16:05:19.309][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:19.310][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:19.311][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.312][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.313][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.316][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.317][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.318][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.320][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.321][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.322][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.324][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.325][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.327][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.328][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:19.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.344][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645159].
biodb.DEBUG[2025-02-08 16:05:19.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:19.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:19.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:19.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:19.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:19.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:19.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:19.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.368][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.369][private$selectFields]
biodb.TRACE[2025-02-08 16:05:19.370][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:19.372][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:19.373][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.374][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.375][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.377][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.379][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.380][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.382][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.383][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.384][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:05:19.386][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.387][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.389][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.390][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:05:19.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.401][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.406][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645048].
biodb.DEBUG[2025-02-08 16:05:19.407][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:19.408][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-08 16:05:19.433][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:05:19.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:05:19.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.438][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:05:19.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:05:19.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:05:19.448][biodb::testThat]
biodb.INFO [2025-02-08 16:05:19.450][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-02-08 16:05:19.451][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:05:19.452][biodb::testThat]
biodb.TRACE[2025-02-08 16:05:19.456][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:05:19.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:05:19.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.461][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:05:19.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:05:19.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:19.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:19.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:19.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:19.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:19.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:19.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:19.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:19.526][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:19.529][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:19.531][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-08 16:05:19.532][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:19.534][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-08 16:05:19.537][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:19.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:19.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:19.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:19.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:19.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:19.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:19.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:19.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:19.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:19.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:19.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:19.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:19.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:19.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:19.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:19.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:19.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:19.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:19.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:19.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:19.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:19.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:19.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:19.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:19.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:19.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:19.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:19.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:19.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:19.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:19.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:19.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.608][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:19.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:19.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.619][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:19.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:19.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:19.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:19.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:19.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:19.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:19.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:19.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:19.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:19.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.642][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:19.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:19.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.647][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:19.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:19.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:19.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:19.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:19.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:19.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.670][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:19.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:19.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:19.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:19.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.689][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:19.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:19.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.693][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:19.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:19.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:19.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:19.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.702][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:19.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:19.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.707][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:19.708][private$selectFields]
biodb.TRACE[2025-02-08 16:05:19.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:19.710][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:19.711][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:19.713][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:19.714][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:19.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.716][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.717][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:19.719][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:19.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.721][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.722][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:19.723][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:19.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.726][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.727][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:19.728][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:19.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.730][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.731][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:19.733][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:19.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.735][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.736][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:19.737][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:19.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.740][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.741][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:19.742][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:19.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.744][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.745][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:19.747][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:19.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.749][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.750][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:19.751][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:19.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.753][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.755][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:19.756][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:19.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.758][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.759][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.760][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.763][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.764][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:19.765][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:19.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.767][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.768][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:19.770][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:19.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.772][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.773][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.774][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.777][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.778][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:19.779][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:19.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.781][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.783][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:19.784][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:19.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.786][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.787][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:19.789][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:19.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.791][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.792][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:19.793][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:19.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.795][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.797][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:19.798][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:19.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.800][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.801][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:19.802][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:19.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.805][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.806][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:19.807][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:19.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.809][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.810][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:19.812][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:19.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.814][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.815][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:19.816][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:19.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.818][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.820][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:19.821][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:19.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.823][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.824][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:19.825][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:19.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.828][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.829][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:19.830][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:19.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.832][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.833][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.835][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.837][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.838][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:19.839][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:19.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.841][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.843][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:19.844][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:19.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.846][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.847][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.848][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.851][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.852][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:19.853][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:19.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.855][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.856][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:19.857][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:19.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.860][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.861][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:19.862][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:19.863][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:19.864][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:19.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.867][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.868][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:19.869][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:19.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.871][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.872][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:19.873][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:19.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.876][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.877][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:19.878][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:19.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.880][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.881][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:19.883][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:19.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.885][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.886][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:19.887][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:19.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.889][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.890][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:19.892][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:19.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.894][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.895][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:19.896][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:19.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.898][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.900][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:19.901][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:19.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.903][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.904][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:19.905][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:19.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.908][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.909][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.910][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:19.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.912][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.913][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:19.914][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:19.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.917][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.918][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:19.919][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:19.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.921][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.922][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.924][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:19.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.926][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.927][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:19.928][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:19.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.930][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.931][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:19.933][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:19.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.935][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.936][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:19.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:19.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:19.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:19.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:19.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:19.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:19.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:19.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:19.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:19.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:19.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:19.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:19.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:19.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:19.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:19.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:19.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:19.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:19.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:19.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:19.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:19.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:19.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:19.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:19.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:19.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:19.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:19.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:19.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.028][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:20.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:20.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.032][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:20.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:20.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.037][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:20.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:20.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:20.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:20.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:20.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:20.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:20.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:20.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.070][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:20.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:20.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.074][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:20.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:20.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.079][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:20.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:20.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:20.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:20.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:20.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:20.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:20.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:20.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.144][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.149][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.154][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.159][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.177][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172631573, 3-(2-ethyl-3-fluoro-5-methyl-phenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoro-5-methylphenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoro-5-methylphenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoranyl-5-methyl-phenyl)-4H-pyrazole, ...].
biodb.DEBUG[2025-02-08 16:05:20.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:20.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:20.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:20.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:20.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:20.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:20.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:20.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:20.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:20.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:20.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:20.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:20.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:20.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:20.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:20.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:20.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:20.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:20.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:20.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:20.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:20.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:20.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:20.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:20.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:20.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:20.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:20.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.276][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:20.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:20.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.281][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:20.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:20.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:20.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:20.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.309][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:20.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:20.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.325][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.329][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.334][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.343][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:20.344][private$selectFields]
biodb.TRACE[2025-02-08 16:05:20.345][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:20.347][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:20.348][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:20.349][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:20.350][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:20.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.352][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.353][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.355][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.357][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.358][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:20.359][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:20.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.362][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.363][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:20.364][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:20.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.366][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.367][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.369][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.371][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.372][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.373][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.375][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.377][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:20.378][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:20.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.380][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.381][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:20.382][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:20.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.385][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.386][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.387][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.389][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.391][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:20.392][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:20.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.394][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.395][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.397][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.399][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.405][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.407][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.409][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.411][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:20.412][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:20.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.414][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.415][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.416][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.419][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.420][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.421][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.423][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.424][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.426][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.428][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.429][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:20.430][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:20.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.432][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.433][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.435][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.437][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.438][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:20.439][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:20.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.441][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.443][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:20.444][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:20.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.446][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.447][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.448][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.451][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.452][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.453][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.455][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.456][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:20.457][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:20.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.460][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.461][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:20.462][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:20.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.464][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.465][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.467][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.469][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.470][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:20.471][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:20.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.473][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.475][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.476][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.478][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.479][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.480][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.483][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.484][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:20.485][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:20.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.487][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.488][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.490][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.492][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.493][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.495][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.497][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.498][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.499][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.501][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.502][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:20.504][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:20.505][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:20.506][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:20.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.508][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.509][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.511][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.513][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.514][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:20.515][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:20.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.517][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.519][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:20.520][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:20.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.522][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.523][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.524][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.527][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.528][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.529][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.531][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.532][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:20.534][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:20.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.536][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.537][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:20.538][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:20.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.540][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.541][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.543][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.545][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.546][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:20.547][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:20.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.549][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.551][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.552][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.554][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.555][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.557][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.559][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.560][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:20.561][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:20.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.564][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.565][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.566][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.568][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.569][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.571][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.573][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.574][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.575][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.578][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.579][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:20.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:20.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:20.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:20.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:20.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:20.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:20.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:20.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:20.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:20.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:20.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:20.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:20.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:20.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:20.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:20.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:20.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:20.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:20.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.666][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:20.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:20.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:20.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:20.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.676][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:20.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:20.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:20.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:20.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:20.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:20.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:20.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:20.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.709][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:20.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:20.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.713][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:20.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:20.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.718][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:20.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:20.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.751][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:20.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:20.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.756][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:20.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:20.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.760][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:20.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:20.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.809][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.821][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172608227, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, ...].
biodb.DEBUG[2025-02-08 16:05:20.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:20.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:20.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:20.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:20.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:20.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:20.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:20.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:20.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:20.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:20.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:20.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:20.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:20.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:20.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:20.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:20.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:20.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:20.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:20.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:20.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:20.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.891][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:20.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:20.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:20.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:20.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:20.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:20.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:20.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:20.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:20.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.919][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:20.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:20.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.924][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:20.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:20.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:20.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:20.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.947][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:20.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:20.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.952][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:20.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:20.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:20.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.971][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:20.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.980][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:20.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.985][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:20.986][private$selectFields]
biodb.TRACE[2025-02-08 16:05:20.987][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:20.988][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:20.989][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:20.991][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:20.992][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:20.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.994][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:20.995][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.996][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:20.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:20.999][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.000][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.001][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.003][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.004][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.006][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.008][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.009][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.010][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.012][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.013][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.015][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.017][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.018][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:21.019][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:21.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.021][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.023][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:21.024][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:21.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.026][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.027][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.028][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.031][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.032][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:21.033][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:21.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.035][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.036][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.037][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.040][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.041][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.042][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.044][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.045][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:21.047][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:21.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.049][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.050][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.051][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.053][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.055][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.056][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.058][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.059][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.060][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.063][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.064][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:21.065][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:21.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.067][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.068][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.069][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.072][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.073][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.074][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.076][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.077][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.079][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.081][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.082][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.083][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.085][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.086][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.088][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.090][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.091][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:21.092][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:21.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.094][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.096][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:21.097][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:21.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.099][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.100][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.101][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.104][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.105][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:21.106][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:21.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.108][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.109][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.110][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.113][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.114][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.115][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.117][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.118][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:21.120][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:21.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.122][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.123][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.124][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.126][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.127][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.129][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.131][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.132][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.133][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.135][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.137][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:21.138][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:21.139][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:21.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:21.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.142][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.143][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.145][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.147][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.148][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.149][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.152][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.153][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.154][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.156][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.157][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.159][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.161][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.162][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.163][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.165][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.166][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:21.168][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:21.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.170][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.171][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:21.172][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:21.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.174][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.175][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.177][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.179][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.180][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:21.181][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:21.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.183][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.185][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.191][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.194][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.195][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.196][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.198][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.199][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:21.201][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:21.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.203][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.204][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.205][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.207][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.208][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.210][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.212][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.213][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.214][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.216][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.218][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:21.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:21.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:21.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:21.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:21.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:21.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:21.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.303][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:21.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:21.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.308][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:21.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:21.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:21.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:21.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:21.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:21.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:21.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:21.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:21.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:21.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.346][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:21.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:21.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.350][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:21.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:21.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.355][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:21.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:21.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:21.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:21.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.393][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:21.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:21.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:21.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:21.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.417][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.421][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.426][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.452][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172593299, (3-ethyl-5-methylsulfonyl-imidazol-4-yl)methanol, (3-ethyl-5-methylsulfonyl-4-imidazolyl)methanol, (3-ethyl-5-methylsulfonylimidazol-4-yl)methanol, (3-ethyl-5-methylsulfonyl-imidazol-4-yl)methanol, ...].
biodb.DEBUG[2025-02-08 16:05:21.454][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:21.455][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:21.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:21.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:21.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:21.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:21.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:21.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:21.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:21.478][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:21.481][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:21.483][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-02-08 16:05:21.484][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:21.487][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-02-08 16:05:21.489][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:21.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:21.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:21.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:21.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:21.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:21.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:21.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:21.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:21.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:21.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:21.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:21.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.562][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:21.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:21.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.566][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:21.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:21.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:21.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:21.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:21.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:21.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.596][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:21.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:21.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.600][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:21.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:21.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.624][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:21.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:21.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.628][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:21.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:21.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.661][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:21.662][private$selectFields]
biodb.TRACE[2025-02-08 16:05:21.663][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:21.668][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:21.669][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:21.670][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:21.671][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:21.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.674][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.675][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.676][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.678][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.680][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.681][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.683][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.684][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.685][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.688][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.689][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.690][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.692][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.693][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.695][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.697][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.698][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:21.699][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:21.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.701][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.702][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:21.704][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:21.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.706][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.707][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.708][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.710][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.712][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:21.713][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:21.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.715][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.716][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.717][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.720][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.721][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.722][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.724][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.725][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:21.727][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:21.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.729][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.730][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.731][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.733][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.735][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.736][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.738][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.739][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.740][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.743][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.744][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:21.745][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:21.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.747][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.748][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.750][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.752][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.753][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.755][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.757][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.758][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.759][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.761][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.762][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.764][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.766][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.767][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.768][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.771][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.772][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:21.773][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:21.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.775][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.776][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:21.778][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:21.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.780][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.781][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.782][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.784][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.785][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:21.787][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:21.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.789][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.790][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.791][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.793][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.795][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.796][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.798][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.799][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:21.800][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:21.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.803][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.804][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.805][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.807][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.808][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.809][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.812][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.813][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.814][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.816][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.817][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:21.819][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:21.820][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:21.821][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:21.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.823][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.824][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.825][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.828][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.829][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.830][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.832][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.833][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.835][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.837][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.838][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.839][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.841][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.843][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.844][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.846][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.847][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:21.848][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:21.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.850][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.852][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:21.853][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:21.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.855][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.856][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.857][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:21.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.860][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.861][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:21.862][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:21.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.864][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.865][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.866][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:21.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.869][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.870][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:21.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.873][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.874][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:21.876][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:21.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.878][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.879][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.880][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:21.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.882][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.883][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.885][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:21.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.887][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.888][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.889][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:21.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.891][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.893][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:21.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:21.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:21.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:21.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:21.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:21.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:21.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:21.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:21.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:21.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:21.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:21.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:21.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:21.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:21.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:21.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.994][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:21.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:21.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:21.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:21.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:22.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:22.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:22.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:22.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:22.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:22.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.027][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:22.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:22.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.032][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:22.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:22.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.036][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:22.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:22.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.069][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:22.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:22.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.074][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:22.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:22.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.078][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:22.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:22.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.106][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.111][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.120][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.132][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172642450, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-5-(hydroxymethyl)-3-oxidanyl-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, ...].
biodb.DEBUG[2025-02-08 16:05:22.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:22.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:22.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:22.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:22.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:22.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:22.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:22.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:22.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:22.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:22.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:22.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.204][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:22.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:22.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:22.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:22.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:22.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:22.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:22.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:22.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.232][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:22.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:22.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.236][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:22.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:22.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:22.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:22.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.264][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:22.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:22.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.283][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.287][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.292][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.297][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:22.298][private$selectFields]
biodb.TRACE[2025-02-08 16:05:22.299][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:22.300][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:22.301][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:22.303][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:22.304][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:22.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.306][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.307][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.308][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.311][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.312][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.313][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.315][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.316][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.318][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.320][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.321][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.322][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.324][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.326][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.327][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.329][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.330][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:22.331][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:22.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.334][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.335][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:22.336][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:22.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.338][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.339][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.341][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.343][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.344][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:22.345][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:22.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.347][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.348][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.350][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.352][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.353][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.354][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.356][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.358][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:22.359][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:22.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.361][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.362][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.363][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.366][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.367][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.373][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.376][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.377][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.378][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.381][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.382][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:22.383][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:22.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.385][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.386][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.388][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.390][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.391][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.392][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.394][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.395][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.397][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.399][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.400][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.401][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.403][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.405][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.406][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.408][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.409][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:22.410][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:22.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.413][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.414][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:22.415][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:22.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.417][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.418][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.419][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.422][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.423][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:22.424][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:22.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.426][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.427][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.428][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.431][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.432][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.433][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.435][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.436][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:22.437][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:22.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.440][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.441][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.442][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.444][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.445][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.446][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.449][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.450][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.451][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.453][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.454][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:22.456][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:22.457][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:22.458][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:22.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.460][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.461][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.462][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.465][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.466][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.467][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.469][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.470][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.471][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.474][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.475][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.476][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.478][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.479][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.481][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.483][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.484][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:22.485][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:22.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.487][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.488][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:22.490][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:22.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.492][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.493][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.494][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.497][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.498][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:22.499][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:22.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.501][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.503][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.504][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.506][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.507][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.508][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.510][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.512][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:22.513][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:22.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.515][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.516][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.517][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.520][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.521][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.522][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.524][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.525][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.526][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.529][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.530][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:22.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:22.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:22.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:22.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:22.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:22.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:22.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.616][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:22.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:22.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.621][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:22.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:22.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.625][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:22.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:22.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:22.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:22.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:22.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:22.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:22.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:22.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.658][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:22.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:22.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.663][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:22.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:22.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.667][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:22.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:22.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:22.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:22.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:22.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:22.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:22.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:22.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.738][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.743][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.752][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.770][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529292, (2S,4R)-4-[(3-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(3-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(3-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(3-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2025-02-08 16:05:22.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:22.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:22.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:22.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:22.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:22.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:22.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:22.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:22.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:22.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:22.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:22.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:22.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:22.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.845][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:22.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:22.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:22.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:22.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:22.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:22.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.868][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:22.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:22.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.872][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:22.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:22.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:22.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:22.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:22.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:22.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:22.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.923][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.928][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:22.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.933][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:22.934][private$selectFields]
biodb.TRACE[2025-02-08 16:05:22.935][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:22.936][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:22.937][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:22.938][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:22.940][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:22.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.942][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.943][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.944][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:22.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.946][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.947][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.949][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:22.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.951][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.952][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.953][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:22.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.955][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.957][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.958][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:22.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.960][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.961][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.962][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:22.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.965][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.966][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:22.967][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:22.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.969][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.970][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:22.971][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:22.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.974][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.975][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.976][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:22.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.978][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.979][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:22.981][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:22.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.983][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.984][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.985][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:22.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.987][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.988][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.990][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:22.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.992][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.993][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:22.994][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:22.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:22.996][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:22.998][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:22.999][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:23.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.001][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.002][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.003][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.006][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.007][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.008][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.010][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.011][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:23.013][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:23.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.015][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.016][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.017][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.019][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.020][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.022][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.024][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.025][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.026][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.028][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.030][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.031][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.033][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.034][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.035][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.038][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.039][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:23.040][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:23.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.042][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.043][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:23.045][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:23.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.047][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.048][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.049][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.051][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.052][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:23.054][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:23.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.056][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.057][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:23.058][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:23.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.062][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.064][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:23.065][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:23.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.067][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.068][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:23.070][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:23.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.072][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.073][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:23.074][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:23.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.077][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.078][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.079][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.081][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.082][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.084][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.086][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.087][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:23.088][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:23.089][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:23.091][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:23.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.093][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.094][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.095][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.098][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.099][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.100][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.102][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.103][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.105][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.107][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.108][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.109][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.111][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.113][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.114][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.116][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.117][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:23.119][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:23.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.121][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.122][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:23.123][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:23.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.125][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.127][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.128][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.130][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.131][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:23.132][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:23.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.135][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.136][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:23.137][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:23.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.139][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.140][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:23.142][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:23.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.144][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.145][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:23.146][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:23.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.148][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.155][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:23.157][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:23.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.159][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.160][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.161][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.164][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.165][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.166][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.168][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.169][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:23.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:23.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:23.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:23.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:23.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:23.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:23.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:23.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:23.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.261][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:23.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:23.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.265][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:23.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:23.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:23.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:23.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:23.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:23.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:23.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:23.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.299][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:23.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:23.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.303][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:23.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:23.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.308][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:23.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:23.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:23.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:23.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:23.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:23.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:23.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:23.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:23.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:23.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:23.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:23.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:23.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:23.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:23.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:23.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.346][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:23.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:23.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.351][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:23.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:23.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:23.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:23.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:23.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:23.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:23.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:23.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.405][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529260, (2S,4R)-4-[(5-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(5-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(5-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(5-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2025-02-08 16:05:23.406][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:23.407][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:23.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:23.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:23.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:23.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:23.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:23.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:23.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:23.435][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:23.438][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:23.440][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-08 16:05:23.441][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:23.444][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-08 16:05:23.446][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:23.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:23.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:23.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:23.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:23.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:23.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:23.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:23.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:23.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:23.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:23.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:23.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.519][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:23.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:23.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.523][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:23.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:23.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:23.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:23.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:23.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:23.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.553][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:23.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:23.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.558][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:23.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:23.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:23.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:23.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:23.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:23.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:23.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:23.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:23.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:23.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:23.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:23.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:23.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:23.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.590][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:23.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:23.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:23.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:23.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.599][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.604][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.609][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.613][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.618][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:23.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:23.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.622][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:23.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:23.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.627][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:23.628][private$selectFields]
biodb.TRACE[2025-02-08 16:05:23.629][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:23.630][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:23.631][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:23.633][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:23.634][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:23.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.636][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.637][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.638][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.641][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.642][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.643][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.645][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.646][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.648][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.650][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.651][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.652][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.655][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.656][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.657][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.659][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.660][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:23.662][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:23.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.664][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.665][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:23.666][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:23.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.668][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.669][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.671][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.673][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.674][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:23.675][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:23.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.678][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.679][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:23.680][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:23.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.682][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.683][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:23.684][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:23.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.687][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.688][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:23.689][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:23.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.691][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.692][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:23.694][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:23.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.696][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.697][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.698][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.701][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.702][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.703][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.705][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.707][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:23.708][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:23.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.710][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.711][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:23.713][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:23.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.715][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.716][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.717][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.719][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.721][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.722][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.724][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.725][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.726][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.729][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.730][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.731][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.733][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.735][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.736][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.738][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.739][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:23.740][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:23.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.743][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.744][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:23.745][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:23.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.747][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.748][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.749][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.752][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.753][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:23.754][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:23.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.756][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.757][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:23.759][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:23.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.761][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.762][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:23.763][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:23.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.765][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.767][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:23.768][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:23.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.770][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.771][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:23.772][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:23.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.775][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.776][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.777][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.779][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.780][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.782][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.784][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.785][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:23.786][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:23.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.788][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.790][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:23.791][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:23.792][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:23.793][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:23.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.795][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.797][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.798][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.800][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.801][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.802][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.805][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.806][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.807][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.809][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.810][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.811][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.814][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.815][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.816][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.818][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.819][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:23.821][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:23.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.823][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.824][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:23.825][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:23.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.827][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.830][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.832][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.833][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:23.834][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:23.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.837][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.838][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:23.839][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:23.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.841][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.842][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:23.844][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:23.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.846][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.847][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:23.848][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:23.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.850][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.852][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:23.853][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:23.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.855][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.856][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.857][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:23.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.860][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.861][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.862][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:23.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.864][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.866][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:23.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:23.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:23.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:23.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:23.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:23.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:23.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:23.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:23.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:23.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:23.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:23.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:23.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:23.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.963][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:23.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:23.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.967][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:23.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:23.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:23.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:23.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:23.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:23.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:23.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:23.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:23.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:23.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:23.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.000][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:24.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:24.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.005][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:24.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:24.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.009][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:24.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:24.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.042][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:24.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:24.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:24.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:24.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.052][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:24.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:24.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.090][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.107][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172631573, 3-(2-ethyl-3-fluoro-5-methyl-phenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoro-5-methylphenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoro-5-methylphenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoranyl-5-methyl-phenyl)-4H-pyrazole, ...].
biodb.DEBUG[2025-02-08 16:05:24.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:24.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:24.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:24.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:24.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:24.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:24.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:24.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:24.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:24.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:24.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:24.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.179][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:24.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:24.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.183][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:24.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:24.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:24.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:24.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:24.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:24.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:24.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:24.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:24.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:24.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.207][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:24.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:24.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.211][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:24.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:24.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.235][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:24.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:24.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:24.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:24.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.244][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.258][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.262][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.272][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:24.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:24.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.276][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:24.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:24.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.281][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:24.282][private$selectFields]
biodb.TRACE[2025-02-08 16:05:24.283][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:24.284][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:24.286][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:24.287][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:24.288][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:24.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.290][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.291][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.293][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.295][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.296][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.297][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.300][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.301][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.302][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.304][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.305][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.307][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.309][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.310][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.311][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.313][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.315][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:24.316][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:24.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.318][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.319][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:24.320][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:24.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.323][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.324][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:24.325][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:24.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.327][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.334][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:24.335][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:24.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.338][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.339][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.340][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.342][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.344][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.345][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.347][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.348][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:24.349][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:24.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.352][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.353][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.354][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.356][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.357][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.359][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.361][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.362][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.363][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.365][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.366][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:24.368][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:24.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.370][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.371][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:24.372][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:24.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.374][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.376][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.377][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.379][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.380][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.381][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.384][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.385][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.386][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.388][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.389][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.390][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.393][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.394][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.395][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.397][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.398][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:24.400][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:24.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.402][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.403][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:24.404][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:24.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.406][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.407][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:24.409][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:24.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.411][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.412][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:24.413][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:24.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.415][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.417][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.418][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.420][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.421][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.422][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.424][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.426][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:24.427][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:24.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.429][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.430][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.431][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.434][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.435][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.436][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.440][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.441][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.443][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.445][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.446][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:24.448][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:24.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.450][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.451][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:24.452][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:24.453][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:24.455][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:24.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.457][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.458][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.459][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.461][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.463][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.464][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.466][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.467][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.469][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.471][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.472][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.473][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.475][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.476][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.478][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.480][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.481][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:24.482][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:24.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.484][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.486][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:24.487][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:24.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.489][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.490][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:24.491][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:24.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.494][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.495][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:24.496][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:24.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.498][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.500][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.502][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.504][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.505][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.506][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.509][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.510][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:24.511][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:24.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.514][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.515][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.516][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.518][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.519][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.521][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.523][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.524][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.525][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.528][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.529][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:24.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:24.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:24.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:24.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:24.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:24.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:24.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:24.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:24.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.634][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:24.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:24.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:24.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:24.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:24.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:24.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:24.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:24.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:24.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:24.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:24.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:24.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:24.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:24.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:24.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:24.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.672][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:24.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:24.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.677][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:24.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:24.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.682][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:24.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:24.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.715][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:24.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:24.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:24.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:24.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:24.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:24.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.734][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.754][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.764][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.785][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172608227, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, ...].
biodb.DEBUG[2025-02-08 16:05:24.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:24.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:24.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:24.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:24.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:24.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:24.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:24.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:24.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:24.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:24.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:24.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.857][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:24.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:24.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.861][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:24.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:24.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.866][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:24.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:24.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:24.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:24.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:24.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:24.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:24.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:24.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.885][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:24.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:24.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.890][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:24.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:24.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:24.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:24.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.914][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:24.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:24.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.919][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:24.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:24.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.928][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:24.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:24.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:24.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.952][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:24.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:24.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.957][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:24.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:24.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.962][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:24.963][private$selectFields]
biodb.TRACE[2025-02-08 16:05:24.964][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:24.965][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:24.966][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:24.968][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:24.969][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:24.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.971][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.972][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.974][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:24.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.976][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.977][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.978][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:24.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.980][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.982][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.983][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:24.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.985][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.986][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.988][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:24.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.990][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.991][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.992][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:24.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.994][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:24.996][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:24.997][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:24.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:24.999][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.000][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:25.002][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:25.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.004][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.005][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.006][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.008][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.010][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:25.011][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:25.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.013][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.014][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.015][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.018][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.019][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.020][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.022][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.024][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:25.025][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:25.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.027][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.028][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.030][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.032][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.033][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.034][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.036][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.038][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.039][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.041][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.042][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:25.043][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:25.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.046][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.047][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:25.048][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:25.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.050][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.051][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.053][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.055][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.056][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.057][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.060][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.061][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.062][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.064][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.065][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.067][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.069][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.070][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.071][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.074][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.075][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:25.076][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:25.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.078][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.079][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:25.081][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:25.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.083][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.084][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.085][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.088][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.089][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:25.090][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:25.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.092][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.093][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.095][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.097][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.098][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.099][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.102][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.103][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:25.104][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:25.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.106][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.107][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.109][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.111][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.112][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.113][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.116][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.117][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.118][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.120][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.121][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:25.123][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:25.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.125][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.126][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:25.127][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:25.128][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:25.130][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:25.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.132][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.139][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.140][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.143][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.144][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.145][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.147][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.149][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.150][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.152][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.153][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.154][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.157][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.158][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.159][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.161][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.162][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:25.164][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:25.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.166][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.167][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:25.168][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:25.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.171][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.172][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.173][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.175][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.176][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:25.177][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:25.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.180][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.181][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.182][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.184][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.185][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.187][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.189][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.190][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:25.191][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:25.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.193][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.195][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.196][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.198][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.199][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.200][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.203][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.204][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.205][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.207][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.209][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:25.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:25.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:25.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:25.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:25.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:25.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:25.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:25.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:25.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.301][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:25.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:25.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.305][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:25.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:25.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:25.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:25.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:25.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:25.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:25.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:25.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.339][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:25.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:25.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.344][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:25.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:25.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.348][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:25.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:25.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.382][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:25.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:25.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:25.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:25.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.391][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:25.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:25.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.401][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.410][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.420][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.425][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.429][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.446][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172593299, (3-ethyl-5-methylsulfonyl-imidazol-4-yl)methanol, (3-ethyl-5-methylsulfonyl-4-imidazolyl)methanol, (3-ethyl-5-methylsulfonylimidazol-4-yl)methanol, (3-ethyl-5-methylsulfonyl-imidazol-4-yl)methanol, ...].
biodb.DEBUG[2025-02-08 16:05:25.447][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:25.448][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:25.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:25.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:25.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:25.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:25.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:25.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:25.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:25.470][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:25.474][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:25.475][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-02-08 16:05:25.477][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:25.479][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-02-08 16:05:25.481][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:25.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:25.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:25.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:25.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:25.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:25.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:25.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:25.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:25.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:25.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:25.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:25.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.561][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:25.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:25.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.566][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:25.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:25.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:25.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:25.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:25.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:25.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.589][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:25.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:25.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.594][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:25.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:25.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:25.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:25.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:25.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:25.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.641][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.646][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.655][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:25.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:25.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.660][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:25.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:25.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.665][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:25.666][private$selectFields]
biodb.TRACE[2025-02-08 16:05:25.667][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:25.668][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:25.669][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:25.670][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:25.672][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:25.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.674][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.675][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.677][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.679][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.680][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.681][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.683][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.685][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.686][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.688][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.689][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.691][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.693][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.694][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.695][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.698][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.699][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:25.700][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:25.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.702][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.704][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:25.705][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:25.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.707][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.708][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.710][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.712][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.713][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:25.714][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:25.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.716][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.718][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.719][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.721][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.722][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.724][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.726][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.727][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:25.728][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:25.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.730][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.732][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.733][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.735][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.736][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.737][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.740][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.741][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.742][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.744][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.746][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:25.747][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:25.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.749][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.750][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:25.751][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:25.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.754][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.755][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.756][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.758][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.760][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.761][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.763][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.764][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.765][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.768][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.769][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.770][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.772][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.773][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.775][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.777][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.778][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:25.779][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:25.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.782][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.783][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:25.784][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:25.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.786][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.787][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.789][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.791][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.792][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:25.793][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:25.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.796][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.797][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.798][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.800][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.801][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.803][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.805][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.806][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:25.807][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:25.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.809][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.811][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.812][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.814][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.815][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.816][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.819][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.820][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.821][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.823][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.824][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:25.826][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:25.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.828][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.829][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:25.830][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:25.832][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:25.835][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:25.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.837][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.838][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.840][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.842][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.843][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.844][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.847][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.848][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.849][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.851][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.852][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.854][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.856][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.857][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.858][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.860][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.862][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:25.863][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:25.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.865][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.866][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:25.867][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:25.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.870][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.871][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.872][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:25.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.874][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.875][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:25.877][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:25.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.879][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.880][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.881][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:25.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.884][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.885][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.886][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:25.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.888][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.889][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:25.891][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:25.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.893][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.894][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.895][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:25.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.897][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.899][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.900][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:25.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.902][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.903][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.905][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:25.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.907][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.908][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:25.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:25.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:25.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:25.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:25.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:25.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:25.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:25.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:25.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:25.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:25.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:25.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:25.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:25.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.001][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:26.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:26.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.006][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:26.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:26.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.011][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:26.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:26.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:26.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:26.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:26.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:26.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:26.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:26.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.044][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:26.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:26.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.049][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:26.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:26.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.054][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:26.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:26.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.087][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:26.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:26.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:26.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:26.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:26.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:26.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.121][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.130][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.135][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.152][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172642450, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-5-(hydroxymethyl)-3-oxidanyl-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, ...].
biodb.DEBUG[2025-02-08 16:05:26.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:26.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:26.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:26.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:26.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:26.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:26.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:26.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:26.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:26.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:26.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:26.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:26.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:26.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:26.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:26.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:26.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:26.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:26.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:26.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:26.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:26.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:26.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:26.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:26.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:26.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:26.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:26.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:26.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:26.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:26.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:26.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.224][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:26.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:26.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:26.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:26.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:26.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:26.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:26.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:26.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.252][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:26.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:26.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.257][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:26.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:26.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:26.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:26.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:26.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:26.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.318][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:26.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:26.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.329][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:26.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:26.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.334][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:26.335][private$selectFields]
biodb.TRACE[2025-02-08 16:05:26.336][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:26.337][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:26.338][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:26.340][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:26.341][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:26.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.343][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.344][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:26.346][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:26.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.348][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.349][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:26.350][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:26.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.352][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.354][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:26.355][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:26.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.357][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.358][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:26.359][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:26.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.362][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.363][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:26.364][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:26.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.366][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.367][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:26.369][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:26.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.371][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.372][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:26.373][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:26.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.376][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.377][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.378][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.380][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.381][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:26.382][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:26.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.385][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.386][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.387][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.389][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.390][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.392][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.394][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.395][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:26.396][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:26.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.399][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.400][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.401][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.403][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.404][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.406][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.408][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.409][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.410][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.412][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.414][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:26.415][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:26.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.417][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.418][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:26.419][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:26.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.422][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.423][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:26.424][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:26.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.426][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.427][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:26.429][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:26.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.431][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.432][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:26.433][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:26.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.436][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.437][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:26.438][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:26.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.440][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.441][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:26.443][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:26.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.445][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.446][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:26.447][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:26.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.450][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.451][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:26.452][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:26.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.454][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.455][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.457][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.459][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.460][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:26.461][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:26.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.463][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.465][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.466][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.468][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.469][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.470][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.473][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.474][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:26.475][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:26.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.477][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.479][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.480][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.482][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.483][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.485][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.487][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.488][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.490][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.493][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.495][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:26.496][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:26.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.499][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.501][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:26.502][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:26.504][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:26.505][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:26.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.507][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.509][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:26.510][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:26.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.512][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.513][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:26.515][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:26.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.517][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.519][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:26.521][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:26.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.524][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.526][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:26.528][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:26.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.532][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.533][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:26.536][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:26.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.539][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.541][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:26.543][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:26.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.546][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.548][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:26.550][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:26.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.554][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.556][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.558][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.561][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.563][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:26.565][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:26.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.568][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.570][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.572][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.576][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.578][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.580][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.583][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.585][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:26.587][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:26.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.591][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.592][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.594][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.598][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.600][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.602][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.605][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.607][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.609][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.613][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.615][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:26.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:26.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:26.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:26.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:26.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:26.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:26.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:26.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:26.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:26.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:26.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:26.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:26.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:26.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:26.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:26.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:26.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:26.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:26.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:26.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:26.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:26.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:26.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:26.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:26.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:26.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:26.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:26.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:26.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:26.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:26.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:26.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:26.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:26.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:26.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:26.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:26.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.714][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:26.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:26.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.718][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:26.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:26.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:26.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:26.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:26.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:26.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:26.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:26.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:26.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:26.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.756][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:26.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:26.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.761][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:26.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:26.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.766][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:26.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:26.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:26.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:26.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:26.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:26.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:26.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:26.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.828][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:26.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.838][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:26.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.847][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.852][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.856][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:26.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.868][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529292, (2S,4R)-4-[(3-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(3-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(3-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(3-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2025-02-08 16:05:26.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:26.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:26.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:26.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:26.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:26.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:26.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:26.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:26.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:26.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:26.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:26.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:26.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:26.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:26.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:26.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:26.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:26.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:26.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:26.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:26.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:26.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:26.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:26.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:26.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:26.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:26.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:26.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:26.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:26.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:26.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:26.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:26.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:26.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.944][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:26.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:26.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:26.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:26.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:26.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:26.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:26.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.968][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:26.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:26.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.973][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:26.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:26.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:26.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:26.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:26.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:26.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:26.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:26.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:27.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:27.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:27.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:27.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:27.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:27.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:27.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:27.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:27.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:27.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.024][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:27.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:27.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.029][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:27.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:27.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.033][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:27.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:27.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.038][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:27.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:27.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.043][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:27.044][private$selectFields]
biodb.TRACE[2025-02-08 16:05:27.045][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:27.046][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:27.047][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:27.049][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:27.050][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:27.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.052][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.053][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:27.054][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:27.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.057][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.058][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:27.059][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:27.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.061][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.063][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:27.064][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:27.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.066][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.067][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:27.068][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:27.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.071][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.072][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:27.073][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:27.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.075][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.076][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:27.078][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:27.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.080][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.081][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:27.082][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:27.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.084][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.086][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:27.087][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:27.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.089][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.090][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:27.091][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:27.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.094][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.095][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:27.096][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:27.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.098][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.099][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.101][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.103][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.104][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:27.105][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:27.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.107][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.108][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:27.110][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:27.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.112][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.113][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:27.114][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:27.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.117][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.118][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:27.119][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:27.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.121][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.122][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:27.124][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:27.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.126][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.127][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:27.128][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:27.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.130][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.132][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:27.133][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:27.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.135][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.136][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:27.137][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:27.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.140][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.141][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:27.142][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:27.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.144][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.145][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:27.147][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:27.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.149][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.150][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:27.151][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:27.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.154][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.155][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:27.156][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:27.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.332][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.333][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:27.335][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:27.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.337][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.338][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:27.339][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:27.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.341][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.342][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:27.344][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:27.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.346][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.347][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:27.348][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:27.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.350][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.352][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.353][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.355][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.356][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:27.357][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:27.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.359][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.361][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:27.362][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:27.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.364][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.365][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:27.366][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:27.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.369][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.370][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:27.371][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:27.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.373][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.374][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:27.375][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:27.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.378][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.379][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:27.380][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:27.381][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:27.382][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:27.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.384][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.385][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:27.387][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:27.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.389][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.390][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:27.391][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:27.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.393][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.394][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:27.396][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:27.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.398][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.399][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:27.400][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:27.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.402][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.403][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:27.405][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:27.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.407][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.408][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:27.409][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:27.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.411][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.412][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:27.414][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:27.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.416][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.417][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:27.418][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:27.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.420][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.422][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:27.423][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:27.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.425][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.426][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:27.427][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:27.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.429][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.431][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.432][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.434][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.435][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:27.436][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:27.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.439][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.440][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:27.441][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:27.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.443][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.444][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:27.445][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:27.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.448][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.449][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:27.450][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:27.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.452][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.453][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:27.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:27.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:27.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:27.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:27.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:27.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:27.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:27.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:27.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:27.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:27.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:27.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:27.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:27.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:27.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:27.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:27.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:27.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:27.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:27.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:27.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:27.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:27.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:27.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:27.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:27.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:27.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:27.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:27.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:27.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:27.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:27.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:27.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:27.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:27.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:27.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:27.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.542][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:27.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:27.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.547][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:27.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:27.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.552][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:27.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:27.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:27.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:27.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:27.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:27.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:27.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:27.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:27.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:27.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:27.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:27.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:27.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:27.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.584][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:27.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:27.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.589][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:27.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:27.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.594][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:27.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:27.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:27.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:27.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:27.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:27.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:27.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:27.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:27.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:27.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:27.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:27.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:27.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:27.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:27.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:27.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:27.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:27.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:27.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:27.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.655][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:27.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:27.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.660][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:27.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:27.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:27.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:27.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:27.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:27.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:27.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:27.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:27.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:27.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.691][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529260, (2S,4R)-4-[(5-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(5-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(5-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(5-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2025-02-08 16:05:27.692][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:27.693][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-08 16:05:27.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:27.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:27.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:27.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:27.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:27.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:27.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:27.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:27.764][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:27.767][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:27.768][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-08 16:05:27.770][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:27.772][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-08 16:05:27.774][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:27.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:27.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:27.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:27.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:27.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:27.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:27.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:27.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:27.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:27.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:27.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:27.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:27.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:27.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:27.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:27.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:27.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:27.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:27.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:27.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:27.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:27.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:27.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:27.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:27.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:27.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:27.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:27.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:27.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:27.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:27.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:27.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.845][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:27.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:27.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.850][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:27.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:27.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:27.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:27.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:27.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:27.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:27.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:27.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:27.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:27.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.873][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:27.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:27.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.877][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:27.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:27.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:27.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:27.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:27.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:27.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:27.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:27.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.905][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:27.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:27.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.910][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:27.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:27.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:27.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:27.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:27.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:27.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.923][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:27.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:27.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.928][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:27.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:27.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:27.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:27.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.937][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:27.938][private$selectFields]
biodb.TRACE[2025-02-08 16:05:27.939][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:27.941][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:27.942][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:27.943][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:27.944][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:27.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.946][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.947][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:27.949][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:27.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.951][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.952][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:27.953][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:27.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.955][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.956][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:27.958][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:27.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.960][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.961][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:27.962][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:27.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.964][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.966][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:27.967][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:27.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.969][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.970][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:27.971][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:27.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.974][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.975][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:27.976][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:27.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.978][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.979][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:27.980][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:27.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.983][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.984][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:27.985][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:27.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.987][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.988][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:27.990][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:27.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.992][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.993][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.994][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:27.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:27.996][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:27.997][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:27.999][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:28.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.001][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.002][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.003][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.005][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.007][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.008][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.010][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.011][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.012][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.015][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.016][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:28.017][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:28.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.019][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.020][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.021][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.024][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.025][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.026][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.028][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.029][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.031][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.033][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.034][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.035][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.037][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.038][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.040][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.042][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.043][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:28.044][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:28.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.046][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.048][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:28.049][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:28.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.051][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.052][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.053][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.056][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.057][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:28.058][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:28.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.060][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.061][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.063][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.065][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.066][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.067][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.069][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.071][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:28.072][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:28.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.074][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.075][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.076][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.078][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.080][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.081][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.083][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.084][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.085][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.088][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.089][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:28.090][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:28.091][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:28.092][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:28.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.095][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.096][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.097][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.099][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.100][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.102][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.104][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.105][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.106][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.108][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.110][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.111][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.113][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.114][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.116][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.123][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.124][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:28.125][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:28.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.127][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.129][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:28.130][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:28.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.132][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.133][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.134][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.136][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.138][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:28.139][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:28.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.141][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.142][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.143][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.145][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.146][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.148][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.150][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.151][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:28.152][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:28.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.154][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.155][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.157][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.159][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.160][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.161][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.163][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.164][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.166][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.168][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.169][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:28.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:28.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:28.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:28.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:28.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:28.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:28.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:28.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:28.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.258][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:28.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:28.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.263][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:28.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:28.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:28.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:28.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:28.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:28.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:28.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:28.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.281][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.291][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.295][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:28.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:28.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.300][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:28.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:28.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.305][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:28.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:28.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.337][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:28.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:28.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.342][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:28.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:28.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:28.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:28.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.352][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.366][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.375][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.380][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.401][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172623142, 1-[3-(3-methylanilino)azetidin-1-yl]ethanone, 1-[3-(3-methylanilino)-1-azetidinyl]ethanone, 1-[3-(3-methylanilino)azetidin-1-yl]ethanone, 1-[3-[(3-methylphenyl)amino]azetidin-1-yl]ethanone, ...].
biodb.DEBUG[2025-02-08 16:05:28.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:28.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:28.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:28.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:28.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:28.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:28.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:28.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:28.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:28.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:28.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:28.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.471][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:28.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:28.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.476][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:28.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:28.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:28.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:28.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:28.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:28.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.501][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:28.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:28.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.506][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:28.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:28.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.534][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:28.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:28.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.538][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:28.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:28.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.552][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.557][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.566][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.570][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:28.572][private$selectFields]
biodb.TRACE[2025-02-08 16:05:28.573][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:28.574][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:28.575][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:28.576][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:28.577][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:28.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.579][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.581][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.582][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.584][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.585][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.586][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.588][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.590][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.591][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.593][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.594][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.595][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.597][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.599][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.600][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.602][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.603][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:28.604][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:28.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.607][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.608][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:28.609][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:28.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.611][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.612][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.613][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.616][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.617][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:28.618][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:28.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.620][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.621][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.622][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.625][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.626][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.627][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.629][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.630][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:28.631][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:28.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.634][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.635][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.636][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.638][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.639][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.641][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.643][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.644][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.645][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.647][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.648][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:28.650][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:28.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.652][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.653][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.654][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.656][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.657][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.659][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.661][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.662][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.663][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.665][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.666][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.668][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.670][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.671][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.672][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.674][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.675][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:28.677][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:28.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.679][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.680][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:28.681][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:28.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.683][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.684][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.686][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.688][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.689][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:28.690][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:28.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.692][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.693][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.695][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.697][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.698][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.699][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.701][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.703][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:28.704][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:28.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.706][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.707][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.708][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.711][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.712][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.713][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.715][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.716][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.717][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.720][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.721][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:28.722][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:28.723][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:28.724][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:28.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.726][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.728][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.729][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.731][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.732][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.733][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.735][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.737][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.738][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.740][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.741][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.742][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.744][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.746][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.747][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.749][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.750][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:28.751][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:28.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.753][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.755][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:28.756][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:28.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.758][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.759][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.760][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.762][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.764][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:28.765][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:28.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.767][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.768][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.769][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.772][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.773][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.774][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.776][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.777][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:28.778][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:28.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.781][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.782][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.783][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.785][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.786][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.787][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:28.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.790][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.791][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.792][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:28.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.794][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.795][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:28.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:28.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:28.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:28.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:28.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:28.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:28.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:28.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:28.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:28.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:28.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:28.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.881][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:28.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:28.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.886][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:28.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:28.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.891][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:28.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:28.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:28.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:28.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:28.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:28.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:28.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:28.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:28.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.929][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:28.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:28.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.933][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:28.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:28.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.938][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:28.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:28.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:28.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:28.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:28.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:28.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.978][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:28.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:28.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.982][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:28.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:28.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:28.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:28.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:28.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.001][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.006][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.010][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.024][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.036][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172622621, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, ...].
biodb.DEBUG[2025-02-08 16:05:29.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:29.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:29.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:29.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:29.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:29.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:29.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:29.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:29.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:29.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:29.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:29.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.106][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:29.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:29.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.111][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:29.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:29.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:29.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:29.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:29.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:29.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.134][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:29.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:29.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.138][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:29.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:29.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.161][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:29.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:29.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.166][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:29.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:29.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.180][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.194][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.198][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:29.199][private$selectFields]
biodb.TRACE[2025-02-08 16:05:29.201][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:29.202][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:29.203][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:29.204][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:29.205][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:29.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.207][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.209][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.210][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.212][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.213][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.214][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.218][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.219][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.221][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.222][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.224][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.226][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.227][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.228][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.230][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.232][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:29.233][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:29.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.235][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.236][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:29.237][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:29.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.240][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.241][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.242][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.244][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.245][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:29.247][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:29.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.249][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.250][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.251][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.253][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.255][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.256][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.258][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.259][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:29.260][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:29.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.263][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.264][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.265][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.267][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.268][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.270][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.272][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.273][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.274][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.277][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.278][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:29.279][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:29.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.281][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.282][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.284][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.286][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.287][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.288][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.291][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.292][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.293][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.295][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.301][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.302][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.305][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.306][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.307][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.309][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.310][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:29.312][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:29.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.314][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.315][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:29.316][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:29.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.318][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.319][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.321][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.323][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.324][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:29.325][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:29.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.327][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.328][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.330][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.332][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.333][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.334][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.336][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.337][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:29.339][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:29.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.341][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.342][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.343][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.345][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.347][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.348][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.350][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.351][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.352][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.354][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.356][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:29.357][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:29.358][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:29.359][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:29.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.361][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.362][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.364][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.366][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.367][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.368][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.370][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.371][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.373][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.375][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.376][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.377][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.379][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.380][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.382][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.384][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.385][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:29.386][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:29.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.388][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.390][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:29.391][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:29.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.393][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.394][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.395][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.397][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.398][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:29.400][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:29.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.402][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.403][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.404][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.406][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.407][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.409][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.411][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.412][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:29.413][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:29.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.415][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.416][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.418][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.420][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.421][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.422][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.424][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.425][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.427][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.429][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.430][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:29.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:29.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:29.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:29.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:29.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:29.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:29.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.516][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:29.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:29.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.521][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:29.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:29.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.525][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:29.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:29.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:29.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:29.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:29.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:29.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:29.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:29.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.558][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:29.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:29.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.563][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:29.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:29.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.567][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:29.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:29.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.600][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:29.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:29.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:29.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:29.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:29.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:29.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.652][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.664][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172602027, 3-isopropyl-6-[(Z)-prop-1-enyl]-5-vinyl-pyrimidin-4-one, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]-4-pyrimidinone, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]pyrimidin-4-one, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]pyrimidin-4-one, ...].
biodb.DEBUG[2025-02-08 16:05:29.665][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:29.666][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:29.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:29.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:29.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:29.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:29.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:29.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:29.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:29.693][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:29.697][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:29.698][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-02-08 16:05:29.700][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:29.702][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-02-08 16:05:29.704][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:29.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:29.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:29.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:29.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:29.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:29.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:29.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:29.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:29.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:29.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:29.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:29.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:29.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:29.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:29.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:29.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:29.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:29.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:29.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:29.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.802][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:29.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:29.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.807][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:29.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:29.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.830][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:29.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:29.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:29.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:29.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.862][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.867][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:29.868][private$selectFields]
biodb.TRACE[2025-02-08 16:05:29.869][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:29.870][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:29.871][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:29.873][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:29.874][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:29.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.876][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.877][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.878][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.880][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.882][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.883][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.885][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.886][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.887][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.889][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.891][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.892][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.894][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.895][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.896][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.899][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.900][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:29.901][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:29.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.903][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.904][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:29.905][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:29.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.908][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.909][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.910][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.912][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.913][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:29.914][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:29.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.917][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.918][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.919][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.921][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.922][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.924][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.926][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.927][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:29.928][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:29.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.930][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.931][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.933][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:29.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.935][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.936][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.937][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:29.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.939][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.940][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.942][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:29.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.944][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.945][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:29.946][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:29.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.948][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.950][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.951][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:29.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.953][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.954][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.955][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:29.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.958][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.959][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.960][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:29.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.962][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.963][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.965][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:29.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.967][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.968][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.969][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:29.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.971][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.972][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:29.974][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:29.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.976][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.977][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:29.978][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:29.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.980][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.981][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.983][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:29.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.985][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.986][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:29.987][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:29.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.989][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.990][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.992][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:29.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.994][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:29.995][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.996][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:29.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:29.998][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.000][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:30.001][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:30.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.003][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.004][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.005][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.007][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.009][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.010][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.012][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.013][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.014][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.017][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.018][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:30.019][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:30.020][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:30.021][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:30.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.024][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.025][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.026][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.028][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.029][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.031][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.033][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.034][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.035][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.037][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.038][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.040][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.042][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.043][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.044][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.046][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.048][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:30.049][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:30.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.051][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.052][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:30.053][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:30.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.056][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.057][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.058][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.060][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.061][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:30.063][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:30.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.065][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.066][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.067][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.069][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.071][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.072][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.074][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.075][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:30.077][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:30.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.079][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.085][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.086][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.089][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.090][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.091][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.093][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.094][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.096][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.098][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.099][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:30.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:30.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:30.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:30.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:30.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:30.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:30.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:30.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:30.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.190][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:30.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:30.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.194][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:30.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:30.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:30.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:30.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:30.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:30.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:30.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:30.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.227][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:30.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:30.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.232][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:30.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:30.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.236][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:30.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:30.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.269][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:30.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:30.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:30.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:30.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.278][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:30.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:30.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.302][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.311][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.316][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.320][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.332][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172642450, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-5-(hydroxymethyl)-3-oxidanyl-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, ...].
biodb.DEBUG[2025-02-08 16:05:30.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:30.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:30.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:30.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:30.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:30.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:30.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:30.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:30.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:30.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:30.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:30.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.405][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:30.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:30.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.409][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:30.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:30.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:30.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:30.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:30.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:30.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.433][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:30.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:30.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.437][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:30.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:30.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.461][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:30.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:30.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:30.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:30.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.489][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.493][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.504][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:30.506][private$selectFields]
biodb.TRACE[2025-02-08 16:05:30.507][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:30.508][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:30.510][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:30.511][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:30.512][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:30.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.514][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.515][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.517][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.519][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.520][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.521][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.523][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.524][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.526][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.528][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.529][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.530][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.532][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.534][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.535][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.537][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.538][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:30.539][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:30.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.542][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.543][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:30.544][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:30.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.546][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.547][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.548][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.551][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.552][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:30.553][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:30.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.555][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.556][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.557][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.560][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.561][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.562][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.564][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.565][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:30.566][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:30.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.569][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.570][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.571][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.573][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.574][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.576][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.578][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.579][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.580][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.582][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.583][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:30.585][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:30.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.587][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.588][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.589][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.591][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.592][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.594][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.596][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.597][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.598][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.600][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.602][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.603][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.605][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.606][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.607][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.610][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.611][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:30.612][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:30.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.614][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.615][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:30.617][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:30.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.619][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.620][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.621][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.623][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.624][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:30.626][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:30.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.628][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.629][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.630][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.632][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.633][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.635][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.637][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.638][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:30.639][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:30.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.641][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.642][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.644][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.646][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.647][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.648][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.650][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.652][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.653][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.655][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.656][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:30.657][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:30.658][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:30.660][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:30.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.662][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.663][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.664][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.666][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.667][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.669][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.671][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.672][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.673][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.675][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.677][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.678][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.680][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.681][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.682][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.684][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.686][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:30.687][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:30.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.689][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.690][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:30.691][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:30.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.693][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.695][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.696][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.698][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.699][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:30.700][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:30.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.703][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.704][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.705][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.707][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.708][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.709][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.712][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.713][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:30.714][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:30.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.716][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.717][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.718][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.721][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.722][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.723][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.725][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.726][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.728][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.730][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.731][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:30.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:30.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:30.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:30.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:30.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:30.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:30.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.765][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:30.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:30.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:30.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:30.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:30.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:30.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.821][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:30.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:30.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:30.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:30.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:30.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:30.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:30.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:30.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:30.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:30.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:30.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.859][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:30.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:30.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.864][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:30.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:30.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.869][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:30.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:30.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:30.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:30.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.906][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:30.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:30.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.911][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:30.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:30.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.915][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:30.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:30.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:30.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.934][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.939][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:30.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.953][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:30.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.969][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172641880, [(4S,5R)-5-ethyl-2,4-dihydroxy-tetrahydrofuran-3-yl] methanesulfonate, methanesulfonic acid [(4S,5R)-5-ethyl-2,4-dihydroxy-3-oxolanyl] ester, [(4S,5R)-5-ethyl-2,4-dihydroxyoxolan-3-yl] methanesulfonate, [(4S,5R)-5-ethyl-2,4-bis(oxidanyl)oxolan-3-yl] methanesulfonate, ...].
biodb.DEBUG[2025-02-08 16:05:30.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:30.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:30.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:30.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:30.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:30.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:30.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:30.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:30.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:30.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:30.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:30.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:30.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:30.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:30.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.039][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:31.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:31.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.043][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:31.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:31.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:31.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:31.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:31.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:31.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.066][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:31.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:31.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.071][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:31.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:31.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.094][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:31.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:31.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:31.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:31.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.112][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.131][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:31.132][private$selectFields]
biodb.TRACE[2025-02-08 16:05:31.133][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:31.134][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:31.135][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:31.137][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:31.138][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:31.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.140][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.141][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.142][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.144][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.146][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.147][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.149][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.150][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.151][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.154][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.155][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.156][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.158][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.159][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.160][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.163][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.164][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:31.165][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:31.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.167][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.168][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:31.170][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:31.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.172][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.173][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.174][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.176][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.177][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:31.179][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:31.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.181][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.182][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.183][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.185][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.186][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.188][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.190][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.191][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:31.192][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:31.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.194][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.196][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.197][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.199][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.200][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.202][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.204][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.205][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.206][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.208][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.210][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:31.211][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:31.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.213][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.214][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.215][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.219][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.220][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.222][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.223][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.224][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.227][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.228][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.229][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.231][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.233][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.234][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.236][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.237][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:31.238][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:31.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.241][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.242][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:31.243][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:31.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.245][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.246][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.248][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.250][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.251][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:31.252][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:31.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.255][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.256][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.257][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.264][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.265][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.267][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.269][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.270][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:31.271][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:31.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.273][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.274][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.276][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.278][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.279][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.280][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.282][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.283][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.285][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.287][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.288][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:31.289][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:31.290][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:31.291][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:31.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.294][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.295][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.296][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.298][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.299][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.300][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.303][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.304][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.305][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.307][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.308][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.309][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.312][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.313][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.314][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.316][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.317][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:31.318][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:31.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.321][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.322][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:31.323][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:31.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.325][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.326][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.327][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.330][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.331][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:31.332][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:31.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.334][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.335][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.336][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.339][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.340][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.341][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.343][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.344][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:31.345][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:31.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.348][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.349][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.350][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.352][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.353][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.354][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.357][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.358][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.359][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.361][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.362][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:31.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:31.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:31.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:31.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:31.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:31.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:31.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.401][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:31.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:31.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.452][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:31.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:31.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.456][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:31.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:31.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:31.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:31.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:31.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:31.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:31.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:31.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.490][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:31.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:31.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.495][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:31.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:31.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.499][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:31.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:31.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.532][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:31.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:31.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.537][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:31.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:31.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.541][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:31.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:31.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.560][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.565][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.583][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.595][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172634706, 3-(3-chloropropyl)-6-fluoro-1-methyl-indazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloranylpropyl)-6-fluoranyl-1-methyl-indazole, ...].
biodb.DEBUG[2025-02-08 16:05:31.596][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:31.598][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:31.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:31.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:31.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:31.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:31.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:31.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:31.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:31.625][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:31.628][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:31.630][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-08 16:05:31.631][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:31.634][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-08 16:05:31.636][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:31.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:31.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:31.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:31.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:31.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:31.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:31.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:31.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:31.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:31.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:31.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:31.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.711][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:31.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:31.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:31.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:31.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:31.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:31.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:31.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:31.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.739][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:31.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:31.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.744][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:31.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:31.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:31.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:31.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:31.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:31.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.799][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.807][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:31.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:31.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.812][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:31.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:31.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.816][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:31.817][private$selectFields]
biodb.TRACE[2025-02-08 16:05:31.819][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:31.820][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:31.821][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:31.822][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:31.823][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:31.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.826][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.827][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.828][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.830][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.831][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.832][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.835][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.836][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.837][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.839][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.840][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.842][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.844][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.845][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.846][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.848][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.849][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:31.851][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:31.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.853][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.854][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:31.855][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:31.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.857][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.858][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.860][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.862][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.863][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:31.864][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:31.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.866][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.867][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.869][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.871][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.872][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.873][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.875][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.876][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:31.878][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:31.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.880][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.881][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.882][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.884][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.885][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.887][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.889][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.890][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.891][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.893][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.894][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:31.896][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:31.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.898][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.899][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:31.900][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:31.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.902][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.903][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.905][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.907][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.908][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.909][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.911][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.912][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.914][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.916][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.917][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.918][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.920][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.921][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.923][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:31.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.925][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.926][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:31.927][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:31.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.929][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.930][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:31.932][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:31.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.934][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.935][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.936][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:31.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.938][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.939][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:31.941][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:31.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.943][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.944][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.945][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:31.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.947][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.948][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.950][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:31.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.952][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.953][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:31.954][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:31.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.956][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.957][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.958][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:31.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.961][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.962][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.963][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:31.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.965][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.966][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.967][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:31.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.970][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.971][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:31.972][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:31.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.974][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.975][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:31.976][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:31.978][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:31.979][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:31.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.981][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.982][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.983][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:31.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.986][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.987][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.988][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:31.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.990][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.991][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.993][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:31.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.995][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:31.996][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.997][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:31.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:31.999][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.000][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.001][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.004][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.005][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:32.006][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:32.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.008][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.009][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:32.010][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:32.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.013][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.014][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.015][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.017][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.018][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:32.020][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:32.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.022][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.023][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.024][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.026][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.027][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.029][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.031][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.032][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:32.033][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:32.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.035][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.037][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.038][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.045][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.046][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.047][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.049][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.051][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.052][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.054][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.055][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:32.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:32.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:32.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:32.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:32.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:32.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:32.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.140][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:32.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:32.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.144][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:32.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:32.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.149][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:32.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:32.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:32.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:32.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:32.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:32.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:32.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:32.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.181][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:32.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:32.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.186][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:32.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:32.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.190][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:32.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:32.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.222][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:32.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:32.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.227][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:32.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:32.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:32.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:32.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.264][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.268][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.273][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.284][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172623142, 1-[3-(3-methylanilino)azetidin-1-yl]ethanone, 1-[3-(3-methylanilino)-1-azetidinyl]ethanone, 1-[3-(3-methylanilino)azetidin-1-yl]ethanone, 1-[3-[(3-methylphenyl)amino]azetidin-1-yl]ethanone, ...].
biodb.DEBUG[2025-02-08 16:05:32.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:32.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:32.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:32.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:32.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:32.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:32.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:32.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:32.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:32.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:32.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:32.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.326][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.354][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:32.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:32.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.358][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:32.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:32.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:32.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:32.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:32.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:32.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.381][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:32.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:32.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.386][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:32.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:32.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:32.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:32.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.414][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:32.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:32.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.432][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.442][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.446][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.451][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:32.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:32.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.455][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:32.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:32.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.460][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:32.461][private$selectFields]
biodb.TRACE[2025-02-08 16:05:32.462][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:32.463][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:32.464][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:32.465][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:32.466][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:32.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.469][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.470][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.471][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.473][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.474][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.475][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.477][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.479][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.480][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.482][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.483][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.484][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.486][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.487][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.489][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.492][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.494][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:32.495][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:32.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.499][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.500][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:32.502][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:32.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.504][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.505][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.507][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.509][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.510][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:32.511][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:32.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.513][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.514][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.516][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.518][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.519][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.520][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.522][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.523][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:32.525][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:32.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.527][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.528][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.529][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.531][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.532][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.534][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.536][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.537][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.538][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.540][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.541][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:32.543][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:32.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.545][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.546][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:32.547][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:32.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.549][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.550][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.552][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.554][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.555][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.556][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.558][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.559][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.560][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.563][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.564][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.565][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.567][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.568][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.569][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.572][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.573][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:32.574][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:32.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.576][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.577][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:32.578][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:32.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.581][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.582][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.583][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.585][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.586][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:32.587][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:32.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.589][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.591][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.592][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.594][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.595][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.596][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.598][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.599][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:32.601][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:32.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.603][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.604][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.605][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.607][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.608][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.609][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.612][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.613][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.614][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.616][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.617][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:32.618][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:32.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.621][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.622][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:32.623][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:32.624][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:32.625][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:32.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.627][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.628][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.630][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.632][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.633][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.634][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.636][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.637][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.638][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.641][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.642][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.643][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.645][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.646][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.647][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.650][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.651][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:32.652][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:32.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.654][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.655][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:32.656][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:32.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.658][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.660][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.661][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.663][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.664][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:32.665][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:32.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.667][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.668][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.670][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.672][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.673][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.674][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.676][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.677][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:32.679][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:32.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.681][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.682][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.683][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.685][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.686][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.688][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.690][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.691][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.692][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.694][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.695][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:32.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:32.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:32.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:32.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:32.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:32.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:32.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:32.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:32.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.785][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:32.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:32.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:32.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:32.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:32.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:32.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:32.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:32.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:32.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:32.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:32.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.827][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:32.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:32.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.832][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:32.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:32.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.836][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:32.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:32.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:32.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:32.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.869][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:32.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:32.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:32.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:32.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:32.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:32.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:32.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.896][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.901][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:32.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:32.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.930][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172622621, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, ...].
biodb.DEBUG[2025-02-08 16:05:32.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:32.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:32.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:32.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:32.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:32.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:32.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:32.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:32.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:32.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:32.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:32.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:32.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:32.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:32.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:32.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:32.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:32.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:32.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:33.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:33.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:33.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:33.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:33.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:33.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:33.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:33.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.026][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:33.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:33.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.031][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:33.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:33.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:33.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:33.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:33.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:33.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.072][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.090][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:33.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:33.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.094][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:33.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:33.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.099][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:33.100][private$selectFields]
biodb.TRACE[2025-02-08 16:05:33.101][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:33.102][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:33.103][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:33.105][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:33.106][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:33.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.108][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.109][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.110][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.112][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.114][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.115][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.117][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.118][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.119][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.121][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.122][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.124][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.126][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.127][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.128][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.130][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.131][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:33.133][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:33.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.135][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.136][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:33.137][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:33.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.139][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.141][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.142][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.144][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.145][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:33.146][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:33.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.148][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.150][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.151][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.153][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.154][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.155][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.157][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.159][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:33.160][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:33.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.162][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.163][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.164][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.166][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.168][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.169][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.171][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.172][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.173][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.176][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.177][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:33.178][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:33.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.180][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.181][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:33.183][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:33.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.185][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.186][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.187][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.189][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.191][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.192][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.194][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.195][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.196][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.203][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.204][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.206][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.208][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.209][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.210][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.212][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.213][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:33.215][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:33.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.218][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:33.219][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:33.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.221][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.222][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.223][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.226][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.227][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:33.228][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:33.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.230][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.231][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.232][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.235][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.236][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.237][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.239][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.240][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:33.241][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:33.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.243][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.245][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.246][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.248][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.249][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.250][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.252][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.253][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.255][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.257][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.258][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:33.259][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:33.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.261][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.262][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:33.264][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:33.265][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:33.266][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:33.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.268][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.269][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.270][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.273][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.274][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.275][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.277][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.278][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.279][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.282][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.283][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.284][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.286][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.287][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.288][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.290][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.292][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:33.293][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:33.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.295][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.296][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:33.297][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:33.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.299][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.300][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.302][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.304][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.305][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:33.306][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:33.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.308][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.309][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.310][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.313][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.314][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.315][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.317][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.318][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:33.319][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:33.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.322][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.323][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.324][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.326][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.327][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.328][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.330][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.332][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.333][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.335][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.336][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:33.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:33.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:33.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:33.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:33.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:33.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:33.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.420][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:33.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:33.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.425][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:33.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:33.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.429][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:33.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:33.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:33.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:33.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:33.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:33.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:33.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:33.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.462][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:33.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:33.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.466][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:33.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:33.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.471][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:33.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:33.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.507][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:33.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:33.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.511][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:33.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:33.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.516][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:33.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:33.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.525][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.535][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.539][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.570][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172602027, 3-isopropyl-6-[(Z)-prop-1-enyl]-5-vinyl-pyrimidin-4-one, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]-4-pyrimidinone, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]pyrimidin-4-one, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]pyrimidin-4-one, ...].
biodb.DEBUG[2025-02-08 16:05:33.571][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:33.572][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:05:33.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:33.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:33.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:33.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:33.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:33.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:33.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:33.599][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:05:33.603][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:05:33.604][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-02-08 16:05:33.606][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:33.608][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-02-08 16:05:33.610][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:05:33.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:33.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:33.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:33.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:33.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:33.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:33.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:33.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:33.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:33.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:33.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:33.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.681][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:33.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:33.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:33.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:33.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:33.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:33.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:33.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:33.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.708][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:33.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:33.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.713][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:33.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:33.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.735][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:33.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:33.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:33.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:33.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.754][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.758][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.767][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.772][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:33.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:33.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.776][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:33.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:33.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.781][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:33.782][private$selectFields]
biodb.TRACE[2025-02-08 16:05:33.783][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:33.784][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:33.785][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:33.787][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:33.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:33.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.790][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.791][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.792][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.794][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.796][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.797][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.799][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.800][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.801][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.804][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.805][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.806][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.810][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.812][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.813][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.815][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.816][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:33.818][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:33.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.820][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.821][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:33.822][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:33.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.824][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.826][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.827][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.829][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.830][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:33.831][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:33.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.834][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.835][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.836][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.838][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.839][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.840][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.843][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.844][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:33.845][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:33.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.847][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.848][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.849][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.852][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.853][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.854][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.856][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.857][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.859][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.861][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.862][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:33.863][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:33.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.865][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.867][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:33.868][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:33.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.870][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.871][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.872][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.874][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.876][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.877][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.879][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.880][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.881][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.884][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.885][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.886][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.888][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.889][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.890][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.893][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.894][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:33.895][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:33.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.897][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.898][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:33.899][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:33.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.902][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.903][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.904][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.906][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.907][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:33.908][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:33.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.911][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.912][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.913][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.915][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.916][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.918][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:33.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.920][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.921][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:33.922][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:33.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.924][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.926][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.927][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:33.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.929][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.930][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.931][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:33.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.934][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.935][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.936][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:33.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.938][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.939][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:33.940][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:33.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.943][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.944][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:33.945][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:33.946][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:33.947][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:33.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.950][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.951][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.952][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:33.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.954][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.955][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.956][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:33.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.959][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.960][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.961][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:33.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.963][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.964][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.966][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:33.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.968][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.969][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.970][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:33.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.972][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.974][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:33.975][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:33.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.982][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.983][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:33.985][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:33.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.987][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.988][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.989][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:33.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.991][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.992][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:33.993][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:33.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:33.996][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:33.997][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.998][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:33.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.000][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.001][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.002][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.005][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.006][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:34.007][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:34.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.009][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.010][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.011][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.014][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.015][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.016][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.018][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.019][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.020][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.022][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.024][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:34.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:34.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:34.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:34.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:34.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:34.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:34.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.108][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:34.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:34.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:34.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:34.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:34.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:34.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:34.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:34.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:34.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:34.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:34.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:34.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.149][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:34.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:34.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.154][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:34.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:34.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.158][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:34.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:34.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.191][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:34.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:34.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:34.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:34.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.200][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:34.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:34.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.209][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.227][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.232][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.237][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.253][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172642450, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-5-(hydroxymethyl)-3-oxidanyl-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, ...].
biodb.DEBUG[2025-02-08 16:05:34.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:34.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:34.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:34.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:34.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:34.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:34.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:34.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:34.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:34.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:34.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:34.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:34.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:34.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.328][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:34.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:34.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:34.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:34.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:34.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:34.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.351][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:34.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:34.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.356][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:34.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:34.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.384][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:34.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:34.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:34.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:34.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.406][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.411][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.420][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:34.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:34.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.424][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:34.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:34.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.429][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:34.430][private$selectFields]
biodb.TRACE[2025-02-08 16:05:34.431][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:34.432][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:34.433][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:34.434][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:34.436][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:34.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.438][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.439][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.440][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.442][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.443][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.445][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.447][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.448][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.449][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.451][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.452][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.453][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.456][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.457][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.458][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.460][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.461][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:34.462][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:34.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.465][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.466][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:34.467][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:34.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.469][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.470][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.471][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.473][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.475][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:34.476][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:34.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.478][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.479][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.480][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.482][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.484][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.485][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.487][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.488][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:34.489][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:34.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.491][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.492][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.494][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.497][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.498][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.500][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.503][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.504][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.505][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.507][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.508][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:34.509][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:34.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.512][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.513][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:34.514][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:34.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.516][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.517][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.518][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.521][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.522][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.523][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.525][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.526][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.527][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.530][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.531][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.532][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.534][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.535][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.536][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.538][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.540][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:34.541][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:34.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.543][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.544][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:34.545][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:34.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.547][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.549][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.550][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.552][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.553][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:34.554][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:34.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.557][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.558][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.559][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.561][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.562][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.563][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.566][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.567][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:34.568][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:34.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.570][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.571][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.572][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.575][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.576][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.577][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.579][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.580][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.581][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.584][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.585][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:34.586][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:34.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.588][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.589][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:34.590][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:34.592][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:34.593][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:34.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.595][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.596][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.597][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.599][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.600][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.602][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.604][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.605][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.606][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.608][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.610][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.611][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.613][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.614][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.615][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.617][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.619][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:34.620][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:34.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.622][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.623][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:34.624][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:34.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.626][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.628][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.629][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.631][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.632][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:34.633][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:34.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.635][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.636][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.640][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.641][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.642][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.644][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.645][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:34.647][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:34.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.649][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.650][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.651][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.653][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.654][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.655][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.658][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.659][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.660][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.662][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.663][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:34.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:34.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:34.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:34.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:34.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:34.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:34.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.754][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:34.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:34.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:34.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:34.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:34.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:34.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:34.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:34.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:34.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:34.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:34.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:34.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.795][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:34.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:34.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.800][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:34.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:34.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.805][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:34.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:34.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:34.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:34.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:34.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:34.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:34.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:34.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.846][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:34.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:34.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.860][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:34.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.869][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.873][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:34.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.887][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:34.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.899][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172641880, [(4S,5R)-5-ethyl-2,4-dihydroxy-tetrahydrofuran-3-yl] methanesulfonate, methanesulfonic acid [(4S,5R)-5-ethyl-2,4-dihydroxy-3-oxolanyl] ester, [(4S,5R)-5-ethyl-2,4-dihydroxyoxolan-3-yl] methanesulfonate, [(4S,5R)-5-ethyl-2,4-bis(oxidanyl)oxolan-3-yl] methanesulfonate, ...].
biodb.DEBUG[2025-02-08 16:05:34.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:34.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:34.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:34.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:34.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:34.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:34.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:34.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:34.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:34.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:34.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:34.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:34.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:34.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:34.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:34.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:34.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.968][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:34.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:34.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.973][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:34.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:34.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:34.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:34.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:34.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:34.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:34.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:34.995][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:34.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:34.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:34.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.000][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:35.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:35.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:35.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:35.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:35.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:35.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:35.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:35.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:35.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:35.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:35.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:35.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:35.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:35.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:35.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:35.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:35.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:35.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.041][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:35.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:35.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:35.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:35.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:35.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:35.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:35.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:35.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.059][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:35.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:35.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.064][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:35.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:35.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.068][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:35.069][private$selectFields]
biodb.TRACE[2025-02-08 16:05:35.071][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:05:35.072][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:05:35.073][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:35.074][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:35.075][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:35.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.077][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.078][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:35.080][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:35.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.082][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.083][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:35.084][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:35.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.086][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.087][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:35.089][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:35.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.091][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.092][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:35.093][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:35.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.095][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.096][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:35.098][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:35.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.100][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.101][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:35.102][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:35.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.104][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.105][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:35.107][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:35.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.109][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.110][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:35.111][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:35.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.113][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.115][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:35.116][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:35.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.118][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.119][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:35.120][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:35.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.123][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.124][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:35.125][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:35.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.127][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.128][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:35.134][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:35.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.137][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.138][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:35.139][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:35.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.141][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.142][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:35.143][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:35.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.146][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.147][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:35.148][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:35.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.150][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.151][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:35.152][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:35.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.155][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.156][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:35.157][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:35.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.159][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.160][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:35.161][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:35.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.163][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.165][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:35.166][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:35.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.168][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.171][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:35.172][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:35.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.174][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.176][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:35.177][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:35.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.179][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.180][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:35.181][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:35.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.184][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.185][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:35.186][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:35.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.188][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.189][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:35.190][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:35.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.193][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:35.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:35.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.197][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.198][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:35.199][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:35.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.202][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.203][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:35.204][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:35.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.206][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.207][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:35.209][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:35.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.211][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.212][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:35.213][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:35.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.215][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.216][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:35.218][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:35.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.220][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.221][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:35.222][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:35.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.224][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.225][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:35.227][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:35.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.229][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.230][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:05:35.231][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:05:35.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.233][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.234][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:35.235][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:05:35.237][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:35.238][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:35.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.240][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.241][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:35.242][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:35.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.244][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.245][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:35.247][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:35.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.249][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.250][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:35.251][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:35.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.253][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.254][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:35.256][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:35.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.258][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.259][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:35.260][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:35.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.262][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.263][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:35.265][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:35.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.267][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.268][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:35.269][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:35.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.271][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.272][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:35.273][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:35.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.276][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.277][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:35.278][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:35.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.280][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.281][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:35.282][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:35.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.284][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.286][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:35.287][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:35.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.289][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.290][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:35.291][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:35.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.293][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.294][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:35.296][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:35.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.298][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.299][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:35.300][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:35.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.302][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.303][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:35.305][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:35.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.307][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.308][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:05:35.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:35.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:35.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:35.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:35.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:35.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:35.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:35.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:35.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:35.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:35.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:35.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:05:35.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:35.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:35.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:35.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:35.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:35.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:05:35.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:35.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:35.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:35.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:35.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:35.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:05:35.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:35.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:35.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:35.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:35.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:35.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:05:35.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:35.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:35.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:35.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:35.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:35.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:05:35.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:35.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:35.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.397][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:35.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:35.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:05:35.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:05:35.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:35.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:35.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:35.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:35.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:05:35.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:05:35.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:35.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:35.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:35.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:35.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:05:35.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:05:35.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.434][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:35.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:35.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.438][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:35.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:35.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.443][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:05:35.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:05:35.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:35.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:35.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:35.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:35.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:35.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:05:35.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:35.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:35.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:35.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:35.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:35.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:05:35.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.476][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:35.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:35.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:35.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:35.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:05:35.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:05:35.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:35.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:35.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:35.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:35.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:35.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:35.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:35.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:35.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.511][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:35.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:35.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:35.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:05:35.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:35.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:35.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.546][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:35.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:35.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.551][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:35.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:05:35.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.563][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172634706, 3-(3-chloropropyl)-6-fluoro-1-methyl-indazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloranylpropyl)-6-fluoranyl-1-methyl-indazole, ...].
biodb.DEBUG[2025-02-08 16:05:35.564][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:05:35.565][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-08 16:05:35.571][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:05:35.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:05:35.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:35.576][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:05:35.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:05:35.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:35.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:05:35.586][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-08 16:05:35.587][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2025-02-08 16:05:35.588][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2025-02-08 16:05:35.590][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-08 16:05:35.591][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:35.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:35.593][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:35.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:35.595][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-08 16:05:35.601][biodb::testContext]
biodb.INFO [2025-02-08 16:05:35.602][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-08 16:05:35.603][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2025-02-08 16:05:35.604][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-08 16:05:35.605][biodb::testContext]
biodb.INFO [2025-02-08 16:05:35.608][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-08 16:05:35.610][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-08 16:05:35.616][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:05:35.617][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-08 16:05:35.618][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-08 16:05:35.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.622][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-08 16:05:35.623][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-08 16:05:35.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.628][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-08 16:05:35.629][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-08 16:05:35.630][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.633][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-08 16:05:35.634][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-08 16:05:35.635][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-08 16:05:35.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.640][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-08 16:05:35.641][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-08 16:05:35.642][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-08 16:05:35.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.646][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-08 16:05:35.647][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-08 16:05:35.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.651][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-08 16:05:35.653][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-08 16:05:35.654][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-08 16:05:35.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.658][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-08 16:05:35.659][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-08 16:05:35.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.663][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-08 16:05:35.665][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-08 16:05:35.666][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-08 16:05:35.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.670][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-08 16:05:35.671][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-08 16:05:35.672][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-08 16:05:35.674][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-08 16:05:35.675][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-08 16:05:35.676][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-08 16:05:35.677][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.680][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-08 16:05:35.681][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-08 16:05:35.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.686][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-08 16:05:35.687][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-08 16:05:35.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.691][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-08 16:05:35.692][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-08 16:05:35.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.696][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-08 16:05:35.698][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-08 16:05:35.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.702][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-08 16:05:35.703][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-08 16:05:35.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.707][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-08 16:05:35.709][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-08 16:05:35.712][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-08 16:05:35.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.716][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-08 16:05:35.718][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-08 16:05:35.719][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-08 16:05:35.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.723][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-08 16:05:35.725][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:05:35.727][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-08 16:05:35.728][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:35.729][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:05:35.730][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:35.731][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:05:35.732][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:05:35.734][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:05:35.735][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-08 16:05:35.736][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:05:35.737][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:35.738][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-08 16:05:35.739][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:05:35.741][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:05:35.742][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:35.743][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:05:35.743][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:05:35.743][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:05:35.743][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-08 16:05:35.743][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-08 16:05:35.744][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:05:35.745][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:05:35.747][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:05:35.748][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:05:35.749][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:05:35.750][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:05:35.751][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:05:35.752][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:05:35.753][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:05:35.754][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:05:35.755][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:05:35.757][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:05:35.758][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-08 16:05:35.760][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:05:35.761][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-08 16:05:35.762][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:35.763][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:05:35.765][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:35.766][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:05:35.767][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:05:35.768][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:05:35.769][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-08 16:05:35.771][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:05:35.772][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:35.773][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-08 16:05:35.774][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:05:35.775][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:05:35.776][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:35.778][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:05:35.778][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:05:35.778][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:05:35.778][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-08 16:05:35.778][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-08 16:05:35.779][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:05:35.780][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:05:35.781][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:05:35.782][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:05:35.783][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:05:35.784][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:05:35.785][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:05:35.787][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:05:35.788][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:05:35.789][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:05:35.790][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:05:35.791][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:05:35.792][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-08 16:05:35.794][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:35.795][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-08 16:05:35.797][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:35.798][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:05:35.799][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:35.800][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:05:35.801][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:05:35.802][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:05:35.804][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-08 16:05:35.805][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:05:35.806][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:05:35.807][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-08 16:05:35.808][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:05:35.809][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:05:35.811][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:35.812][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:05:35.813][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:05:35.814][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:05:35.815][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:05:35.816][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:05:35.817][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:05:35.818][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:05:35.820][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:05:35.821][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:05:35.822][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:05:35.823][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:05:35.824][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:05:35.825][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:05:35.827][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-08 16:05:35.828][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:35.830][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-08 16:05:35.831][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:35.832][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:05:35.833][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:35.834][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:05:35.835][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:05:35.837][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:05:35.838][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-08 16:05:35.839][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:05:35.840][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:05:35.841][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-08 16:05:35.842][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:05:35.844][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:05:35.845][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:35.846][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:05:35.847][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:05:35.848][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:05:35.849][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:05:35.850][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:05:35.852][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:05:35.853][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:05:35.854][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:05:35.855][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:05:35.856][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:05:35.857][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:05:35.858][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:05:35.859][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:05:35.861][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:05:35.862][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:35.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:35.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.869][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:35.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:35.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:35.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:35.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:35.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:35.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.886][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:35.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:35.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:35.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:35.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:35.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:35.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.901][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:35.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:35.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.907][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:35.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:35.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.912][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:35.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:35.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:35.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:35.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:35.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:35.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:35.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:35.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:35.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:35.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.945][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:35.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:35.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:35.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:35.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:35.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:35.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:35.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:35.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:35.960][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-08 16:05:35.962][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-08 16:05:35.964][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-08 16:05:35.965][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-08 16:05:35.967][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-08 16:05:35.968][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-08 16:05:35.970][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-08 16:05:35.971][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-08 16:05:35.973][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-08 16:05:35.974][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-08 16:05:35.976][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-08 16:05:35.977][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-08 16:05:35.979][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-08 16:05:35.980][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-08 16:05:35.982][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-08 16:05:35.983][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-08 16:05:35.985][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-08 16:05:35.986][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-08 16:05:35.988][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-08 16:05:35.989][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-08 16:05:35.991][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-08 16:05:35.992][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-08 16:05:35.994][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-08 16:05:35.995][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-08 16:05:35.997][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-08 16:05:35.999][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-08 16:05:36.000][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-08 16:05:36.002][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-08 16:05:36.003][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-08 16:05:36.005][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-08 16:05:36.006][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-08 16:05:36.008][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-08 16:05:36.009][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-08 16:05:36.011][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-08 16:05:36.012][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-08 16:05:36.014][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-08 16:05:36.015][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-08 16:05:36.017][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-08 16:05:36.018][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-08 16:05:36.020][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-08 16:05:36.021][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-08 16:05:36.023][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-08 16:05:36.024][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-08 16:05:36.026][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-08 16:05:36.027][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-08 16:05:36.029][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-08 16:05:36.030][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-08 16:05:36.032][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-08 16:05:36.033][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-08 16:05:36.035][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-08 16:05:36.036][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-08 16:05:36.038][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-08 16:05:36.039][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-08 16:05:36.041][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-08 16:05:36.042][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-08 16:05:36.044][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-08 16:05:36.045][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-08 16:05:36.047][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-08 16:05:36.048][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-08 16:05:36.050][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-08 16:05:36.051][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-08 16:05:36.053][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-08 16:05:36.054][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-08 16:05:36.056][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-08 16:05:36.057][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-08 16:05:36.059][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-08 16:05:36.060][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-08 16:05:36.062][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-08 16:05:36.063][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-08 16:05:36.065][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-08 16:05:36.066][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-08 16:05:36.068][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-08 16:05:36.069][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-08 16:05:36.071][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-08 16:05:36.072][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-08 16:05:36.074][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-08 16:05:36.076][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-08 16:05:36.077][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-08 16:05:36.079][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-08 16:05:36.080][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-08 16:05:36.082][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-08 16:05:36.083][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-08 16:05:36.085][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-08 16:05:36.086][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-08 16:05:36.089][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-08 16:05:36.090][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:05:36.091][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:36.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:36.093][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:36.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:36.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:36.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:36.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:36.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:36.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:36.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:36.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:36.103][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:36.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:36.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:36.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:36.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:36.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:36.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:36.110][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:36.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:36.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:36.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:36.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:36.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:36.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:36.117][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:36.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:36.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:36.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:36.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:36.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:36.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:36.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:36.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:36.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:36.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:36.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:36.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:36.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:36.132][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:36.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:36.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:36.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:36.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:36.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:36.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:36.139][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:36.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:36.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:36.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:36.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:36.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:36.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:36.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:36.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:36.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:36.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:36.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:36.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:36.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:36.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:36.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:36.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:36.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:36.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:36.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:36.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:36.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:36.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:36.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:36.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:36.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:36.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:36.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:36.168][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:36.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:36.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:36.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:36.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:36.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:36.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:36.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:36.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:36.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:36.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:36.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:36.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:36.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:36.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:36.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:36.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:36.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:36.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:36.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:36.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:36.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:36.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:36.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:36.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:36.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:36.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:36.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:36.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:36.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:36.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:36.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:36.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:36.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:36.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:36.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:36.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:36.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:36.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:36.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:36.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:36.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:36.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:05:36.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:36.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:36.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:36.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:36.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:36.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:05:36.221][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-02-08 16:05:36.223][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-02-08 16:05:36.225][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.226][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-02-08 16:05:36.228][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.229][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:05:36.230][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.231][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:05:36.232][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.233][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:05:36.234][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-02-08 16:05:36.236][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:05:36.237][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.238][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-02-08 16:05:36.239][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:05:36.240][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-02-08 16:05:36.240][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-02-08 16:05:36.241][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:05:36.242][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:05:36.244][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-08 16:05:36.245][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:05:36.246][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:05:36.247][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:05:36.248][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:05:36.249][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:05:36.250][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:05:36.251][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-08 16:05:36.251][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-02-08 16:05:36.252][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:05:36.254][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:05:36.255][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.256][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:05:36.257][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-02-08 16:05:36.259][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.260][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-02-08 16:05:36.261][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.262][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:05:36.264][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.265][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:05:36.266][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.267][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:05:36.268][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:05:36.269][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:05:36.271][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.272][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-02-08 16:05:36.273][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:05:36.274][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-02-08 16:05:36.274][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-02-08 16:05:36.274][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-02-08 16:05:36.274][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-02-08 16:05:36.274][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-02-08 16:05:36.274][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-02-08 16:05:36.275][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:05:36.276][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:05:36.277][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-08 16:05:36.279][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:05:36.280][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:05:36.281][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:05:36.282][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:05:36.283][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:05:36.284][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:05:36.285][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:05:36.285][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:05:36.286][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:05:36.287][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:05:36.289][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.290][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:05:36.291][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-08 16:05:36.293][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:05:36.294][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-02-08 16:05:36.295][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.297][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:05:36.298][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.299][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:05:36.300][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.301][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:05:36.302][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:05:36.304][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:05:36.311][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.312][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-02-08 16:05:36.313][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:05:36.314][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-08 16:05:36.314][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:05:36.314][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:05:36.314][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:05:36.314][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:05:36.314][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:05:36.314][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:05:36.314][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:05:36.314][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:05:36.314][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:05:36.314][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-02-08 16:05:36.314][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:05:36.314][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:05:36.314][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:05:36.316][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:05:36.317][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:05:36.317][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:05:36.317][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:05:36.318][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-08 16:05:36.319][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:05:36.320][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:05:36.321][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:05:36.323][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:05:36.324][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:05:36.325][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:05:36.326][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:05:36.326][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:05:36.326][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-08 16:05:36.327][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:05:36.328][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:05:36.329][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.330][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-08 16:05:36.332][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-08 16:05:36.334][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.335][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-02-08 16:05:36.336][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.337][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:05:36.338][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.339][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:05:36.340][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.342][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:05:36.343][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:05:36.344][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:05:36.345][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.346][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-02-08 16:05:36.347][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:05:36.348][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-02-08 16:05:36.348][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-08 16:05:36.350][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:05:36.351][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:05:36.352][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-08 16:05:36.353][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:05:36.354][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:05:36.355][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:05:36.356][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:05:36.357][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:05:36.358][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:05:36.360][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:05:36.360][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:05:36.360][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-08 16:05:36.361][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:05:36.362][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:05:36.363][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:05:36.364][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-08 16:05:36.365][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-02-08 16:05:36.367][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-08 16:05:36.369][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-08 16:05:36.370][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-02-08 16:05:36.372][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-08 16:05:36.374][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-02-08 16:05:36.378][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-08 16:05:36.380][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2025-02-08 16:05:36.381][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-08 16:05:36.383][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2025-02-08 16:05:36.384][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-08 16:05:36.385][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-08 16:05:36.387][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2025-02-08 16:05:36.388][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-08 16:05:36.389][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-08 16:05:36.391][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-08 16:05:36.396][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2025-02-08 16:05:36.401][biodb::testThat]
biodb.INFO [2025-02-08 16:05:36.402][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-02-08 16:05:36.403][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:05:36.404][biodb::testThat]
biodb.TRACE[2025-02-08 16:05:36.408][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2025-02-08 16:05:36.410][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:05:36.413][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2025-02-08 16:05:36.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:36.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:36.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:36.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:36.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:36.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:36.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:36.429][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.430][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.432][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.439][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:36.440][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:36.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.442][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:36.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:36.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.449][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:05:36.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:05:36.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:05:36.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:05:36.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:05:36.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:05:36.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:36.495][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2025-02-08 16:05:36.498][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:05:36.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:05:36.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.505][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:05:36.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:05:36.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:05:36.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:05:36.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.518][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:05:36.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:05:36.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.525][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:05:36.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:05:36.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.531][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:05:36.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:05:36.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.538][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:05:36.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:05:36.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:05:36.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:05:36.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:05:36.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:05:36.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:05:36.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:05:36.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:05:36.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:05:36.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.659][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.661][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.663][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:36.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:36.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:36.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:36.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:36.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:36.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.693][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:36.694][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:36.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.696][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:36.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:36.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.712][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.713][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.716][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.722][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:36.723][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:36.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.726][ef$get] fields variable is a list.
biodb.INFO [2025-02-08 16:05:36.738][biodb::testThat]
biodb.INFO [2025-02-08 16:05:36.739][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-08 16:05:36.740][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:05:36.741][biodb::testThat]
biodb.DEBUG[2025-02-08 16:05:36.744][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2025-02-08 16:05:36.746][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:05:36.749][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2025-02-08 16:05:36.751][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:05:36.767][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2025-02-08 16:05:36.768][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:05:36.770][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:05:36.772][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2025-02-08 16:05:36.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:05:36.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:36.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:36.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:36.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:36.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:36.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:05:36.795][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.796][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.798][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.805][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:36.806][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:36.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.808][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:36.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:05:36.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:05:36.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:05:36.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:05:36.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:05:36.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:05:36.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:05:36.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:05:36.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:05:36.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:05:36.861][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2025-02-08 16:05:36.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:05:36.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:05:36.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:05:36.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:05:36.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:05:36.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:05:36.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:05:36.888][biodb::testThat]
biodb.INFO [2025-02-08 16:05:36.889][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-08 16:05:36.890][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:05:36.891][biodb::testThat]
biodb.INFO [2025-02-08 16:05:36.900][biodb::testThat]
biodb.INFO [2025-02-08 16:05:36.901][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-02-08 16:05:36.902][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:05:36.903][biodb::testThat]
biodb.WARN [2025-02-08 16:05:36.907][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2025-02-08 16:05:36.911][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2025-02-08 16:05:36.922][biodb::testThat]
biodb.INFO [2025-02-08 16:05:36.924][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-02-08 16:05:36.925][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:05:36.926][biodb::testThat]
biodb.TRACE[2025-02-08 16:05:36.939][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:05:36.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:05:36.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.944][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:05:36.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:05:36.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:05:36.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:05:36.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.953][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:05:36.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:05:36.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.958][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:05:36.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:05:36.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.963][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:05:36.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:05:36.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.968][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:05:36.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:05:36.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.974][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:05:36.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:05:36.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.979][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:05:36.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:05:36.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:05:36.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:05:36.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.989][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:05:36.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:05:36.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:36.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:36.997][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:05:36.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:05:37.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:37.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:37.005][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:05:37.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:05:37.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:37.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:05:37.010][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:05:37.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:05:37.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:05:37.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:05:37.023][biodb::testThat]
biodb.INFO [2025-02-08 16:05:37.024][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-08 16:05:37.025][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:05:37.027][biodb::testThat]
biodb.INFO [2025-02-08 16:05:37.038][biodb::testThat]
biodb.INFO [2025-02-08 16:05:37.039][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-08 16:05:37.040][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:05:37.041][biodb::testThat]
biodb.INFO [2025-02-08 16:05:37.052][biodb::testThat]
biodb.INFO [2025-02-08 16:05:37.054][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-08 16:05:37.055][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:05:37.056][biodb::testThat]
biodb.DEBUG[2025-02-08 16:05:37.060][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2025-02-08 16:05:37.175][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2025-02-08 16:05:37.277][biodb::testThat]
biodb.INFO [2025-02-08 16:05:37.279][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-08 16:05:37.280][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:05:37.281][biodb::testThat]
biodb.DEBUG[2025-02-08 16:05:37.382][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2025-02-08 16:05:37.453][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-08 16:05:37.455][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2025-02-08 16:05:37.456][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2025-02-08 16:05:37.458][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-08 16:05:37.459][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:05:37.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:05:37.461][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:05:37.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:05:37.463][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:05:37.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1033 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1033 ]
> 
> proc.time()
   user  system elapsed 
  55.34    2.95  104.37

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.11.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck'
* using R Under development (unstable) (2025-01-21 r87610 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'biodbNcbi/DESCRIPTION' ... OK
* this is package 'biodbNcbi' version '1.11.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbNcbi' can be installed ... OK
* checking installed package size ... INFO
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  NcbiCcdsConn.Rd: BiodbFactory, BiodbConn
  NcbiCcdsEntry.Rd: BiodbHtmlEntry
  NcbiEntrezConn.Rd: BiodbConn
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in 'longtests' ... WARNING
'library' or 'require' call not declared from: 'biodbNci'
* checking tests in 'longtests' ...
  Running 'testthat.R'
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  'E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log'
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package 'biodbNcbi' ...
** this is package 'biodbNcbi' version '1.11.0'
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)