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### Running command:
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###   /home/rapidbuild/bbs-3.24-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('BiocPkgTools_1.31.6.tar.gz','quit-with-status'=TRUE)"
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── Installing BiocPkgTools ─────────────────────────────────────────────────────
✔ Package installed successfully
── BiocPkgTools session metadata ───────────────────────────────────────────────
→ sourceDir: /tmp/Rtmpm2mTSV/file3ce60e14ff52ab/BiocPkgTools
→ BiocVersion: 3.24
→ Package: BiocPkgTools
→ PackageVersion: 1.31.6
→ BiocCheckDir: /media/volume/teran2_disk/rapidbuild/bbs-3.24-bioc-rapid/meat/BiocPkgTools.BiocCheck
→ BiocCheckVersion: 1.49.6
→ sourceDir: /tmp/Rtmpm2mTSV/file3ce60e14ff52ab/BiocPkgTools
→ installDir: /tmp/Rtmpm2mTSV/file3ce60e11e0bdea
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on BiocPkgTools ───────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (14%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* Checking package installation calls in R code...
* Checking for library/require of BiocPkgTools...
* Checking coding practice...
ℹ NOTE: Avoid sapply(); use vapply()
  Found in files:
    • R/biocPkgList.R (line 48, column 57)
    • ...
    • R/pkgDependencyMetrics.R (line 376, column 9)
ℹ NOTE: Avoid 1:...; use seq_len() or seq_along()
  Found in files:
    • biocBuildReport.R (line 126, column 23)
    • ...
    • utilities.R (line 68, column 14)
ℹ NOTE: Avoid 'cat' and 'print' outside of 'show' methods
  Found in files:
    • cat() in R/cache.R (line 10, column 13)
    • ...
    • cat() in R/pkgBiocDeps.R (line 142, column 5)
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/biocBuildReport.R (line 154, column 20)
    • ...
    • R/vignetteTools.R (line 42, column 7)
ℹ NOTE: Avoid redundant 'stop' and 'warn*' in signal conditions
  Found in files:
    • R/biocBuildEmail.R (line 277, column 17)
    • ...
    • R/biocVIEWSdb.R (line 13, column 13)
* Checking parsed R code in R directory, examples, vignettes...
ℹ NOTE: Avoid 'suppressWarnings'/'*Messages' if possible (found 2 times)
  • suppressMessages() in R/biocBuildReport.R (line 146, column 9)
  • suppressMessages() in R/repositoryStats.R (line 82, column 24)
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 13
functions greater than 50 lines.
  The longest 5 functions are:
    • biocBuildReport() (R/biocBuildReport.R): 112 lines
    • ...
    • .formatBiocYearsDF() (R/getYearsInBioc.R): 73 lines
* Checking man page documentation...
! WARNING: Empty or missing \value sections found in man page(s).
  Found in files:
    • man/biocBuildReportDB.Rd
    • ...
    • man/templatePath.Rd
Failed to query server: Failed to activate service 'org.freedesktop.timedate1': timed out (service_start_timeout=25000ms)
Warning in system("timedatectl", intern = TRUE) :
  running command 'timedatectl' had status 1
ℹ NOTE: Consider adding runnable examples to man pages that document exported
objects.
  • biocBuildReportDB.Rd
  • ...
  • getPkgYearsInBioc.Rd
ℹ NOTE: Usage of dontrun / donttest tags found in man page examples. 7% of man
pages use at least one of these tags.
  Found in files:
    • biocPkgRanges.Rd
    • getBiocVignette.Rd
    • getPkgYearsInBioc.Rd
ℹ NOTE: Use donttest instead of dontrun.
  Found in files:
    • biocPkgRanges.Rd
    • getBiocVignette.Rd
    • getPkgYearsInBioc.Rd
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 122 lines (2%) are > 80 characters long.
  First few lines:
    • R/biocBuildEmail.R#L142 #' @param version `character()` A vector ...
    • ...
    • vignettes/BiocPkgTools.Rmd#L373 [relations vocabulary of the Library of
    ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 495 lines (7%) are
not.
  First few lines:
    • R/biocBuildReport.R#L52 stopifnot(is.logical(stage.timings), i ...
    • ...
    • vignettes/BiocPkgTools.Rmd#L415 city region country ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
✖ ERROR: Add package to Watched Tags in your Support Site profile; visit
https://support.bioconductor.org/accounts/edit/profile
── BiocCheck v1.49.6 results ───────────────────────────────────────────────────
✖ 1 ERRORS | ⚠ 1 WARNINGS | ℹ 14 NOTES
ℹ See the BiocPkgTools.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.