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This page was generated on 2025-03-22 12:13 -0400 (Sat, 22 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 869
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Package 34/217HostnameOS / ArchINSTALLBUILDCHECK
BiocSingular 1.23.0  (landing page)
Aaron Lun
Snapshot Date: 2025-03-22 12:00 -0400 (Sat, 22 Mar 2025)
git_url: https://git.bioconductor.org/packages/BiocSingular
git_branch: devel
git_last_commit: bd97d96
git_last_commit_date: 2024-10-29 10:34:47 -0400 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped


BUILD results for BiocSingular on teran2

To the developers/maintainers of the BiocSingular package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BiocSingular
Version: 1.23.0
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocSingular
StartedAt: 2025-03-22 12:09:18 -0400 (Sat, 22 Mar 2025)
EndedAt: 2025-03-22 12:09:21 -0400 (Sat, 22 Mar 2025)
EllapsedTime: 3.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocSingular
###
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* checking for file ‘BiocSingular/DESCRIPTION’ ... OK
* preparing ‘BiocSingular’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘BiocSingular’ ...
** this is package ‘BiocSingular’ version ‘1.23.0’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
using C++17
g++ -std=gnu++17 -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/beachmat/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/assorthead/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
RcppExports.cpp:58:1: fatal error: error writing to /tmp/ccemmbAv.s: No space left on device
   58 | }
      | ^
compilation terminated.
make: *** [/home/rapidbuild/bbs-3.21-bioc-rapid/R/etc/Makeconf:202: RcppExports.o] Error 1
ERROR: compilation failed for package ‘BiocSingular’
* removing ‘/tmp/RtmpMJ7n9i/Rinst103ff2b291926/BiocSingular’
      -----------------------------------
ERROR: package installation failed