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This page was generated on 2025-03-21 13:06 -0400 (Fri, 21 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 869
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Package 53/217HostnameOS / ArchINSTALLBUILDCHECK
CompoundDb 1.11.2  (landing page)
Johannes Rainer
Snapshot Date: 2025-03-21 12:00 -0400 (Fri, 21 Mar 2025)
git_url: https://git.bioconductor.org/packages/CompoundDb
git_branch: devel
git_last_commit: 6421537
git_last_commit_date: 2025-01-17 03:25:26 -0400 (Fri, 17 Jan 2025)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for CompoundDb on teran2

To the developers/maintainers of the CompoundDb package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: CompoundDb
Version: 1.11.2
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data CompoundDb
StartedAt: 2025-03-21 12:28:40 -0400 (Fri, 21 Mar 2025)
EndedAt: 2025-03-21 12:28:53 -0400 (Fri, 21 Mar 2025)
EllapsedTime: 13.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data CompoundDb
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* checking for file ‘CompoundDb/DESCRIPTION’ ... OK
* preparing ‘CompoundDb’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘CompoundDb’ ...
** this is package ‘CompoundDb’ version ‘1.11.2’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘mass2mz’ in package ‘CompoundDb’
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in get(classMetaName(cl), where) :
  internal error 1 in R_decompress1 with libdeflate
Error: package or namespace load failed for ‘CompoundDb’ in get(classMetaName(cl), where):
 lazy-load database '/tmp/Rtmpp8uMag/Rinstba195a91f6/00LOCK-CompoundDb/00new/CompoundDb/R/CompoundDb.rdb' is corrupt
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/tmp/Rtmpp8uMag/Rinstba195a91f6/CompoundDb’
      -----------------------------------
ERROR: package installation failed