Rapid builds (Linux only) of a subset of BioC 3.23<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2026-03-12 r89611) -- "Unsuffered Consequences"	920
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BUILD results for TCGAbiolinks on teran2

To the developers/maintainers of the TCGAbiolinks package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: TCGAbiolinks

Version: 2.39.0

Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data TCGAbiolinks

StartedAt: 2026-03-15 01:37:22 -0400 (Sun, 15 Mar 2026)

EndedAt: 2026-03-15 01:41:39 -0400 (Sun, 15 Mar 2026)

EllapsedTime: 257.4 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data TCGAbiolinks
###
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* checking for file ‘TCGAbiolinks/DESCRIPTION’ ... OK
* preparing ‘TCGAbiolinks’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘analysis.Rmd’ using rmarkdown
--- finished re-building ‘analysis.Rmd’

--- re-building ‘casestudy.Rmd’ using rmarkdown
Could not fetch https://maxcdn.bootstrapcdn.com/font-awesome/4.4.0/css/font-awesome.min.css
HttpExceptionRequest Request {
  host                 = "maxcdn.bootstrapcdn.com"
  port                 = 443
  secure               = True
  requestHeaders       = []
  path                 = "/font-awesome/4.4.0/css/font-awesome.min.css"
  queryString          = ""
  method               = "GET"
  proxy                = Nothing
  rawBody              = False
  redirectCount        = 10
  responseTimeout      = ResponseTimeoutDefault
  requestVersion       = HTTP/1.1
}
 (ConnectionFailure Network.Socket.getAddrInfo (called with preferred socket type/protocol: AddrInfo {addrFlags = [AI_ADDRCONFIG], addrFamily = AF_UNSPEC, addrSocketType = Stream, addrProtocol = 0, addrAddress = <assumed to be undefined>, addrCanonName = <assumed to be undefined>}, host name: Just "maxcdn.bootstrapcdn.com", service name: Just "443"): does not exist (Try again))
Error: processing vignette 'casestudy.Rmd' failed with diagnostics:
pandoc document conversion failed with error 61
--- failed re-building ‘casestudy.Rmd’

--- re-building ‘classifiers.Rmd’ using rmarkdown
--- finished re-building ‘classifiers.Rmd’

--- re-building ‘clinical.Rmd’ using rmarkdown
--- finished re-building ‘clinical.Rmd’

--- re-building ‘download_prepare.Rmd’ using rmarkdown
--- finished re-building ‘download_prepare.Rmd’

--- re-building ‘extension.Rmd’ using rmarkdown
--- finished re-building ‘extension.Rmd’

--- re-building ‘index.Rmd’ using rmarkdown
--- finished re-building ‘index.Rmd’

--- re-building ‘mutation.Rmd’ using rmarkdown
--- finished re-building ‘mutation.Rmd’

--- re-building ‘query.Rmd’ using rmarkdown
--- finished re-building ‘query.Rmd’

--- re-building ‘stemness_score.Rmd’ using rmarkdown
--- finished re-building ‘stemness_score.Rmd’

--- re-building ‘subtypes.Rmd’ using rmarkdown
--- finished re-building ‘subtypes.Rmd’

SUMMARY: processing the following file failed:
  ‘casestudy.Rmd’

Error: Vignette re-building failed.
Execution halted