Back to Rapid builds (Linux only) of a subset of BioC 3.23
Report updated every 6 hours

This page was generated on 2025-12-19 15:55 -0500 (Fri, 19 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" 926
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 214/230HostnameOS / ArchINSTALLBUILDCHECK
TCGAbiolinks 2.39.0  (landing page)
Tiago Chedraoui Silva
Snapshot Date: 2025-12-19 12:00 -0500 (Fri, 19 Dec 2025)
git_url: https://git.bioconductor.org/packages/TCGAbiolinks
git_branch: devel
git_last_commit: 2072af1
git_last_commit_date: 2025-10-29 10:27:16 -0500 (Wed, 29 Oct 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  

BUILD results for TCGAbiolinks on teran2

To the developers/maintainers of the TCGAbiolinks package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: TCGAbiolinks
Version: 2.39.0
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data TCGAbiolinks
StartedAt: 2025-12-19 13:21:49 -0500 (Fri, 19 Dec 2025)
EndedAt: 2025-12-19 13:26:24 -0500 (Fri, 19 Dec 2025)
EllapsedTime: 275.3 seconds
RetCode: 0
Status:   OK  
PackageFile: TCGAbiolinks_2.39.0.tar.gz
PackageFileSize: 49.76 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data TCGAbiolinks
###
##############################################################################
##############################################################################


* checking for file ‘TCGAbiolinks/DESCRIPTION’ ... OK
* preparing ‘TCGAbiolinks’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... OK
Warning: ‘inst/doc’ files
    ‘index.html’, ‘mutation.html’, ‘query.html’, ‘stemness_score.html’,  ‘subtypes.html’, ‘analysis.R’, ‘casestudy.R’, ‘clinical.R’,  ‘download_prepare.R’, ‘extension.R’, ‘query.R’
  ignored as vignettes have been rebuilt.
  Run R CMD build with --no-build-vignettes to prevent rebuilding.
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building ‘TCGAbiolinks_2.39.0.tar.gz’