| Back to Rapid builds (Linux only) of a subset of BioC 3.21 Report updated every 6 hours |
This page was generated on 2025-02-13 15:44 -0500 (Thu, 13 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 869 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 21/217 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
| basilisk 1.19.1 (landing page) Aaron Lun
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
|
To the developers/maintainers of the basilisk package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: basilisk |
| Version: 1.19.1 |
| Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD check --install=check:basilisk.install-out.txt --library=/home/rapidbuild/bbs-3.21-bioc-rapid/R/site-library --timings basilisk_1.19.1.tar.gz |
| StartedAt: 2025-02-13 13:46:19 -0500 (Thu, 13 Feb 2025) |
| EndedAt: 2025-02-13 13:54:11 -0500 (Thu, 13 Feb 2025) |
| EllapsedTime: 471.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: basilisk.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD check --install=check:basilisk.install-out.txt --library=/home/rapidbuild/bbs-3.21-bioc-rapid/R/site-library --timings basilisk_1.19.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/basilisk.Rcheck’
* using R Under development (unstable) (2025-01-20 r87609)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘basilisk/DESCRIPTION’ ... OK
* this is package ‘basilisk’ version ‘1.19.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
inst/example/.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘basilisk’ can be installed ... NOTE
Found the following notes/warnings:
Non-staged installation was used
See ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/basilisk.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
basiliskStart.Rd: activateEnvironment, getExternalDir
listPackages.Rd: installConda
useBasiliskEnv.Rd: activateEnvironment
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
basiliskStart 34.584 12.110 49.647
createLocalBasiliskEnv 11.973 5.115 19.970
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/basilisk.Rcheck/00check.log’
for details.
basilisk.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD INSTALL basilisk ### ############################################################################## ############################################################################## * installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library’ * installing *source* package ‘basilisk’ ... ** this is package ‘basilisk’ version ‘1.19.1’ ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (basilisk)
basilisk.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(basilisk)
Loading required package: reticulate
> if (.Platform$OS.type != "windows") test_check("basilisk")
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2025.1.31-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libexpat conda-forge/linux-64::libexpat-2.6.4-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.6-h2dba641_0
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
liblzma conda-forge/linux-64::liblzma-5.6.4-hb9d3cd8_0
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.48.0-hee588c1_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-h2d0b736_3
openssl conda-forge/linux-64::openssl-3.4.1-h7b32b05_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/linux-64::python-3.12.8-h9e4cc4f_1_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.8.0-pyhff2d567_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2025a-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=2.2.3
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2024.1
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-28_h59b9bed_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-28_he106b2a_openblas
libgfortran conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1
libgfortran5 conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1
liblapack conda-forge/linux-64::liblapack-3.9.0-28_h7ac8fdf_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.28-pthreads_h94d23a6_1
libstdcxx conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1
numpy conda-forge/linux-64::numpy-2.2.3-py312h72c5963_0
pandas conda-forge/linux-64::pandas-2.2.3-py312hf9745cd_1
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python-tzdata conda-forge/noarch::python-tzdata-2025.1-pyhd8ed1ab_0
python_abi conda-forge/linux-64::python_abi-3.12-5_cp312
pytz conda-forge/noarch::pytz-2024.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: - \ done
Verifying transaction: / - \ | / done
Executing transaction: \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2025.1.31-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libexpat conda-forge/linux-64::libexpat-2.6.4-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.6-h2dba641_0
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
liblzma conda-forge/linux-64::liblzma-5.6.4-hb9d3cd8_0
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.48.0-hee588c1_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-h2d0b736_3
openssl conda-forge/linux-64::openssl-3.4.1-h7b32b05_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/linux-64::python-3.12.8-h9e4cc4f_1_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.8.0-pyhff2d567_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2025a-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=2.2.2
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2023.4
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-28_h59b9bed_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-28_he106b2a_openblas
libgfortran conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1
libgfortran5 conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1
liblapack conda-forge/linux-64::liblapack-3.9.0-28_h7ac8fdf_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.28-pthreads_h94d23a6_1
libstdcxx conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1
numpy conda-forge/linux-64::numpy-2.2.3-py312h72c5963_0
pandas conda-forge/linux-64::pandas-2.2.2-py312h1d6d2e6_1
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python-tzdata conda-forge/noarch::python-tzdata-2025.1-pyhd8ed1ab_0
python_abi conda-forge/linux-64::python_abi-3.12-5_cp312
pytz conda-forge/noarch::pytz-2023.4-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: - done
Verifying transaction: | / - \ | done
Executing transaction: - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=2.7
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
ca-certificates conda-forge/linux-64::ca-certificates-2025.1.31-hbcca054_0
certifi conda-forge/linux-64::certifi-2019.11.28-py27h8c360ce_1
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libffi conda-forge/linux-64::libffi-3.2.1-he1b5a44_1007
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
libsqlite conda-forge/linux-64::libsqlite-3.46.0-hde9e2c9_0
libstdcxx conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1
libzlib conda-forge/linux-64::libzlib-1.2.13-h4ab18f5_6
ncurses conda-forge/linux-64::ncurses-6.5-h2d0b736_3
openssl conda-forge/linux-64::openssl-1.1.1w-hd590300_0
pip conda-forge/noarch::pip-20.1.1-pyh9f0ad1d_0
python conda-forge/linux-64::python-2.7.15-h5a48372_1011_cpython
python_abi conda-forge/linux-64::python_abi-2.7-1_cp27mu
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/linux-64::setuptools-44.0.0-py27_0
sqlite conda-forge/linux-64::sqlite-3.46.0-h6d4b2fc_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
zlib conda-forge/linux-64::zlib-1.2.13-h4ab18f5_6
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2025.1.31-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libexpat conda-forge/linux-64::libexpat-2.6.4-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.6-h2dba641_0
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
liblzma conda-forge/linux-64::liblzma-5.6.4-hb9d3cd8_0
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.48.0-hee588c1_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-h2d0b736_3
openssl conda-forge/linux-64::openssl-3.4.1-h7b32b05_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/linux-64::python-3.12.8-h9e4cc4f_1_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.8.0-pyhff2d567_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2025a-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2023.4
The following NEW packages will be INSTALLED:
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
pytz conda-forge/noarch::pytz-2023.4-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: - done
Verifying transaction: | / done
Executing transaction: \ | / - \ | / - \ | / done
Collecting pandas==2.2.2
Using cached pandas-2.2.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
Collecting numpy>=1.26.0 (from pandas==2.2.2)
Downloading numpy-2.2.3-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (62 kB)
Requirement already satisfied: python-dateutil>=2.8.2 in ./install-test-client/thingo/lib/python3.12/site-packages (from pandas==2.2.2) (2.8.2)
Requirement already satisfied: pytz>=2020.1 in ./install-test-client/thingo/lib/python3.12/site-packages (from pandas==2.2.2) (2023.4)
Collecting tzdata>=2022.7 (from pandas==2.2.2)
Using cached tzdata-2025.1-py2.py3-none-any.whl.metadata (1.4 kB)
Requirement already satisfied: six>=1.5 in ./install-test-client/thingo/lib/python3.12/site-packages (from python-dateutil>=2.8.2->pandas==2.2.2) (1.17.0)
Using cached pandas-2.2.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.7 MB)
Downloading numpy-2.2.3-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.1 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.1/16.1 MB 137.5 MB/s eta 0:00:00
Using cached tzdata-2025.1-py2.py3-none-any.whl (346 kB)
Installing collected packages: tzdata, numpy, pandas
Successfully installed numpy-2.2.3 pandas-2.2.2 tzdata-2025.1
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2025.1.31-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libexpat conda-forge/linux-64::libexpat-2.6.4-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.6-h2dba641_0
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
liblzma conda-forge/linux-64::liblzma-5.6.4-hb9d3cd8_0
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.48.0-hee588c1_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-h2d0b736_3
openssl conda-forge/linux-64::openssl-3.4.1-h7b32b05_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/linux-64::python-3.12.8-h9e4cc4f_1_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.8.0-pyhff2d567_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2025a-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Processing /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/basilisk/example/inst/test_dummy
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Building wheels for collected packages: test_dummy
Building wheel for test_dummy (setup.py): started
Building wheel for test_dummy (setup.py): finished with status 'done'
Created wheel for test_dummy: filename=test_dummy-0.1-py3-none-any.whl size=1311 sha256=32d957458eb06cbc239808b68b3b9b498f91f66d50e797db1e282343009013a8
Stored in directory: /tmp/pip-ephem-wheel-cache-tdum9e_p/wheels/c2/4d/d8/5f77297a8203549487964be09fd0091e11966baa8d3bb5ff4e
Successfully built test_dummy
Installing collected packages: test_dummy
Successfully installed test_dummy-0.1
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2025.1.31-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libexpat conda-forge/linux-64::libexpat-2.6.4-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.6-h2dba641_0
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
liblzma conda-forge/linux-64::liblzma-5.6.4-hb9d3cd8_0
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.48.0-hee588c1_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-h2d0b736_3
openssl conda-forge/linux-64::openssl-3.4.1-h7b32b05_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/linux-64::python-3.12.8-h9e4cc4f_1_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.8.0-pyhff2d567_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2025a-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed
PackagesNotFoundError: The following packages are not available from current channels:
- whheeeeeeeeeeeeeeeeee=0.0.1*
Current channels:
- https://conda.anaconda.org/conda-forge
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
trying URL 'https://github.com/conda-forge/miniforge/releases/download/24.11.3-0/Miniforge3-24.11.3-0-Linux-x86_64.sh'
Content type 'application/octet-stream' length 77993651 bytes (74.4 MB)
==================================================
downloaded 74.4 MB
PREFIX=/tmp/Rtmp6NAbn8/file3b244a77819863/1.19.1/0
Unpacking payload ...
Extracting _libgcc_mutex-0.1-conda_forge.tar.bz2
Extracting ca-certificates-2024.12.14-hbcca054_0.conda
Extracting ld_impl_linux-64-2.43-h712a8e2_2.conda
Extracting pybind11-abi-4-hd8ed1ab_3.tar.bz2
Extracting python_abi-3.12-5_cp312.conda
Extracting tzdata-2025a-h78e105d_0.conda
Extracting libgomp-14.2.0-h77fa898_1.conda
Extracting _openmp_mutex-4.5-2_gnu.tar.bz2
Extracting libgcc-14.2.0-h77fa898_1.conda
Extracting c-ares-1.34.4-hb9d3cd8_0.conda
Extracting libexpat-2.6.4-h5888daf_0.conda
Extracting libgcc-ng-14.2.0-h69a702a_1.conda
Extracting liblzma-5.6.3-hb9d3cd8_1.conda
Extracting libstdcxx-14.2.0-hc0a3c3a_1.conda
Extracting libzlib-1.3.1-hb9d3cd8_2.conda
Extracting ncurses-6.5-h2d0b736_2.conda
Extracting openssl-3.4.0-h7b32b05_1.conda
Extracting reproc-14.2.5.post0-hb9d3cd8_0.conda
Extracting bzip2-1.0.8-h4bc722e_7.conda
Extracting keyutils-1.6.1-h166bdaf_0.tar.bz2
Extracting libedit-3.1.20240808-pl5321h7949ede_0.conda
Extracting libev-4.33-hd590300_2.conda
Extracting libffi-3.4.2-h7f98852_5.tar.bz2
Extracting libiconv-1.17-hd590300_2.conda
Extracting libnsl-2.0.1-hd590300_0.conda
Extracting libsqlite-3.48.0-hee588c1_0.conda
Extracting libssh2-1.11.1-hf672d98_0.conda
Extracting libstdcxx-ng-14.2.0-h4852527_1.conda
Extracting libuuid-2.38.1-h0b41bf4_0.conda
Extracting libxcrypt-4.4.36-hd590300_1.conda
Extracting lz4-c-1.10.0-h5888daf_1.conda
Extracting lzo-2.10-hd590300_1001.conda
Extracting readline-8.2-h8228510_1.conda
Extracting reproc-cpp-14.2.5.post0-h5888daf_0.conda
Extracting tk-8.6.13-noxft_h4845f30_101.conda
Extracting fmt-11.0.2-h434a139_0.conda
Extracting krb5-1.21.3-h659f571_0.conda
Extracting libnghttp2-1.64.0-h161d5f1_0.conda
Extracting libsolv-0.7.30-h3509ff9_0.conda
Extracting libxml2-2.13.5-h0d44e9d_1.conda
Extracting python-3.12.8-h9e4cc4f_1_cpython.conda
Extracting yaml-cpp-0.8.0-h59595ed_0.conda
Extracting zstd-1.5.6-ha6fb4c9_0.conda
Extracting libarchive-3.7.7-h4585015_3.conda
Extracting libcurl-8.11.1-h332b0f4_0.conda
Extracting menuinst-2.2.0-py312h7900ff3_0.conda
Extracting archspec-0.2.5-pyhd8ed1ab_0.conda
Extracting boltons-24.0.0-pyhd8ed1ab_1.conda
Extracting brotli-python-1.1.0-py312h2ec8cdc_2.conda
Extracting certifi-2024.12.14-pyhd8ed1ab_0.conda
Extracting charset-normalizer-3.4.1-pyhd8ed1ab_0.conda
Extracting colorama-0.4.6-pyhd8ed1ab_1.conda
Extracting distro-1.9.0-pyhd8ed1ab_1.conda
Extracting frozendict-2.4.6-py312h66e93f0_0.conda
Extracting hpack-4.0.0-pyhd8ed1ab_1.conda
Extracting hyperframe-6.0.1-pyhd8ed1ab_1.conda
Extracting idna-3.10-pyhd8ed1ab_1.conda
Extracting jsonpointer-3.0.0-py312h7900ff3_1.conda
Extracting libmamba-1.5.12-h49b8a8d_0.conda
Extracting packaging-24.2-pyhd8ed1ab_2.conda
Extracting platformdirs-4.3.6-pyhd8ed1ab_1.conda
Extracting pluggy-1.5.0-pyhd8ed1ab_1.conda
Extracting pycosat-0.6.6-py312h66e93f0_2.conda
Extracting pycparser-2.22-pyh29332c3_1.conda
Extracting pysocks-1.7.1-pyha55dd90_7.conda
Extracting ruamel.yaml.clib-0.2.8-py312h66e93f0_1.conda
Extracting setuptools-75.8.0-pyhff2d567_0.conda
Extracting truststore-0.10.0-pyhd8ed1ab_0.conda
Extracting wheel-0.45.1-pyhd8ed1ab_1.conda
Extracting cffi-1.17.1-py312h06ac9bb_0.conda
Extracting h2-4.1.0-pyhd8ed1ab_1.conda
Extracting jsonpatch-1.33-pyhd8ed1ab_1.conda
Extracting libmambapy-1.5.12-py312hbaee817_0.conda
Extracting pip-24.3.1-pyh8b19718_2.conda
Extracting ruamel.yaml-0.18.10-py312h66e93f0_0.conda
Extracting tqdm-4.67.1-pyhd8ed1ab_1.conda
Extracting zstandard-0.23.0-py312hef9b889_1.conda
Extracting conda-package-streaming-0.11.0-pyhd8ed1ab_0.conda
Extracting urllib3-2.3.0-pyhd8ed1ab_0.conda
Extracting requests-2.32.3-pyhd8ed1ab_1.conda
Extracting conda-package-handling-2.4.0-pyh7900ff3_2.conda
Extracting conda-24.11.3-py312h7900ff3_0.conda
Extracting conda-libmamba-solver-24.9.0-pyhd8ed1ab_0.conda
Extracting mamba-1.5.12-py312h9460a1c_0.conda
Installing base environment...
Transaction
Prefix: /tmp/Rtmp6NAbn8/file3b244a77819863/1.19.1/0
Updating specs:
- conda-forge/linux-64::_libgcc_mutex==0.1=conda_forge[md5=d7c89558ba9fa0495403155b64376d81]
- conda-forge/linux-64::ca-certificates==2024.12.14=hbcca054_0[md5=720523eb0d6a9b0f6120c16b2aa4e7de]
- conda-forge/linux-64::ld_impl_linux-64==2.43=h712a8e2_2[md5=048b02e3962f066da18efe3a21b77672]
- conda-forge/noarch::pybind11-abi==4=hd8ed1ab_3[md5=878f923dd6acc8aeb47a75da6c4098be]
- conda-forge/linux-64::python_abi==3.12=5_cp312[md5=0424ae29b104430108f5218a66db7260]
- conda-forge/noarch::tzdata==2025a=h78e105d_0[md5=dbcace4706afdfb7eb891f7b37d07c04]
- conda-forge/linux-64::libgomp==14.2.0=h77fa898_1[md5=cc3573974587f12dda90d96e3e55a702]
- conda-forge/linux-64::_openmp_mutex==4.5=2_gnu[md5=73aaf86a425cc6e73fcf236a5a46396d]
- conda-forge/linux-64::libgcc==14.2.0=h77fa898_1[md5=3cb76c3f10d3bc7f1105b2fc9db984df]
- conda-forge/linux-64::c-ares==1.34.4=hb9d3cd8_0[md5=e2775acf57efd5af15b8e3d1d74d72d3]
- conda-forge/linux-64::libexpat==2.6.4=h5888daf_0[md5=db833e03127376d461e1e13e76f09b6c]
- conda-forge/linux-64::libgcc-ng==14.2.0=h69a702a_1[md5=e39480b9ca41323497b05492a63bc35b]
- conda-forge/linux-64::liblzma==5.6.3=hb9d3cd8_1[md5=2ecf2f1c7e4e21fcfe6423a51a992d84]
- conda-forge/linux-64::libstdcxx==14.2.0=hc0a3c3a_1[md5=234a5554c53625688d51062645337328]
- conda-forge/linux-64::libzlib==1.3.1=hb9d3cd8_2[md5=edb0dca6bc32e4f4789199455a1dbeb8]
- conda-forge/linux-64::ncurses==6.5=h2d0b736_2[md5=04b34b9a40cdc48cfdab261ab176ff74]
- conda-forge/linux-64::openssl==3.4.0=h7b32b05_1[md5=4ce6875f75469b2757a65e10a5d05e31]
- conda-forge/linux-64::reproc==14.2.5.post0=hb9d3cd8_0[md5=69fbc0a9e42eb5fe6733d2d60d818822]
- conda-forge/linux-64::bzip2==1.0.8=h4bc722e_7[md5=62ee74e96c5ebb0af99386de58cf9553]
- conda-forge/linux-64::keyutils==1.6.1=h166bdaf_0[md5=30186d27e2c9fa62b45fb1476b7200e3]
- conda-forge/linux-64::libedit==3.1.20240808=pl5321h7949ede_0[md5=8247f80f3dc464d9322e85007e307fe8]
- conda-forge/linux-64::libev==4.33=hd590300_2[md5=172bf1cd1ff8629f2b1179945ed45055]
- conda-forge/linux-64::libffi==3.4.2=h7f98852_5[md5=d645c6d2ac96843a2bfaccd2d62b3ac3]
- conda-forge/linux-64::libiconv==1.17=hd590300_2[md5=d66573916ffcf376178462f1b61c941e]
- conda-forge/linux-64::libnsl==2.0.1=hd590300_0[md5=30fd6e37fe21f86f4bd26d6ee73eeec7]
- conda-forge/linux-64::libsqlite==3.48.0=hee588c1_0[md5=84bd1c9a82b455e7a2f390375fb38f90]
- conda-forge/linux-64::libssh2==1.11.1=hf672d98_0[md5=be2de152d8073ef1c01b7728475f2fe7]
- conda-forge/linux-64::libstdcxx-ng==14.2.0=h4852527_1[md5=8371ac6457591af2cf6159439c1fd051]
- conda-forge/linux-64::libuuid==2.38.1=h0b41bf4_0[md5=40b61aab5c7ba9ff276c41cfffe6b80b]
- conda-forge/linux-64::libxcrypt==4.4.36=hd590300_1[md5=5aa797f8787fe7a17d1b0821485b5adc]
- conda-forge/linux-64::lz4-c==1.10.0=h5888daf_1[md5=9de5350a85c4a20c685259b889aa6393]
- conda-forge/linux-64::lzo==2.10=hd590300_1001[md5=ec7398d21e2651e0dcb0044d03b9a339]
- conda-forge/linux-64::readline==8.2=h8228510_1[md5=47d31b792659ce70f470b5c82fdfb7a4]
- conda-forge/linux-64::reproc-cpp==14.2.5.post0=h5888daf_0[md5=828302fca535f9cfeb598d5f7c204323]
- conda-forge/linux-64::tk==8.6.13=noxft_h4845f30_101[md5=d453b98d9c83e71da0741bb0ff4d76bc]
- conda-forge/linux-64::fmt==11.0.2=h434a139_0[md5=995f7e13598497691c1dc476d889bc04]
- conda-forge/linux-64::krb5==1.21.3=h659f571_0[md5=3f43953b7d3fb3aaa1d0d0723d91e368]
- conda-forge/linux-64::libnghttp2==1.64.0=h161d5f1_0[md5=19e57602824042dfd0446292ef90488b]
- conda-forge/linux-64::libsolv==0.7.30=h3509ff9_0[md5=02539b77d25aa4f65b20246549e256c3]
- conda-forge/linux-64::libxml2==2.13.5=h0d44e9d_1[md5=f5b05674697ae7d2c5932766695945e1]
- conda-forge/linux-64::python==3.12.8=h9e4cc4f_1_cpython[md5=7fd2fd79436d9b473812f14e86746844]
- conda-forge/linux-64::yaml-cpp==0.8.0=h59595ed_0[md5=965eaacd7c18eb8361fd12bb9e7a57d7]
- conda-forge/linux-64::zstd==1.5.6=ha6fb4c9_0[md5=4d056880988120e29d75bfff282e0f45]
- conda-forge/linux-64::libarchive==3.7.7=h4585015_3[md5=a28808eae584c7f519943719b2a2b386]
- conda-forge/linux-64::libcurl==8.11.1=h332b0f4_0[md5=2b3e0081006dc21e8bf53a91c83a055c]
- conda-forge/linux-64::menuinst==2.2.0=py312h7900ff3_0[md5=f22f8e77b36e67297feffe03eefd5375]
- conda-forge/noarch::archspec==0.2.5=pyhd8ed1ab_0[md5=845b38297fca2f2d18a29748e2ece7fa]
- conda-forge/noarch::boltons==24.0.0=pyhd8ed1ab_1[md5=d88c38e66d85ecc9c7e2c4110676bbf4]
- conda-forge/linux-64::brotli-python==1.1.0=py312h2ec8cdc_2[md5=b0b867af6fc74b2a0aa206da29c0f3cf]
- conda-forge/noarch::certifi==2024.12.14=pyhd8ed1ab_0[md5=6feb87357ecd66733be3279f16a8c400]
- conda-forge/noarch::charset-normalizer==3.4.1=pyhd8ed1ab_0[md5=e83a31202d1c0a000fce3e9cf3825875]
- conda-forge/noarch::colorama==0.4.6=pyhd8ed1ab_1[md5=962b9857ee8e7018c22f2776ffa0b2d7]
- conda-forge/noarch::distro==1.9.0=pyhd8ed1ab_1[md5=0a2014fd9860f8b1eaa0b1f3d3771a08]
- conda-forge/linux-64::frozendict==2.4.6=py312h66e93f0_0[md5=9fa8408745a0621314b7751d11fecc18]
- conda-forge/noarch::hpack==4.0.0=pyhd8ed1ab_1[md5=2aa5ff7fa34a81b9196532c84c10d865]
- conda-forge/noarch::hyperframe==6.0.1=pyhd8ed1ab_1[md5=566e75c90c1d0c8c459eb0ad9833dc7a]
- conda-forge/noarch::idna==3.10=pyhd8ed1ab_1[md5=39a4f67be3286c86d696df570b1201b7]
- conda-forge/linux-64::jsonpointer==3.0.0=py312h7900ff3_1[md5=6b51f7459ea4073eeb5057207e2e1e3d]
- conda-forge/linux-64::libmamba==1.5.12=h49b8a8d_0[md5=d6aec145c4f2473c09c2699d74f6dfc0]
- conda-forge/noarch::packaging==24.2=pyhd8ed1ab_2[md5=3bfed7e6228ebf2f7b9eaa47f1b4e2aa]
- conda-forge/noarch::platformdirs==4.3.6=pyhd8ed1ab_1[md5=577852c7e53901ddccc7e6a9959ddebe]
- conda-forge/noarch::pluggy==1.5.0=pyhd8ed1ab_1[md5=e9dcbce5f45f9ee500e728ae58b605b6]
- conda-forge/linux-64::pycosat==0.6.6=py312h66e93f0_2[md5=08223e6a73e0bca5ade16ec4cebebf23]
- conda-forge/noarch::pycparser==2.22=pyh29332c3_1[md5=12c566707c80111f9799308d9e265aef]
- conda-forge/noarch::pysocks==1.7.1=pyha55dd90_7[md5=461219d1a5bd61342293efa2c0c90eac]
- conda-forge/linux-64::ruamel.yaml.clib==0.2.8=py312h66e93f0_1[md5=532c3e5d0280be4fea52396ec1fa7d5d]
- conda-forge/noarch::setuptools==75.8.0=pyhff2d567_0[md5=8f28e299c11afdd79e0ec1e279dcdc52]
- conda-forge/noarch::truststore==0.10.0=pyhd8ed1ab_0[md5=ad1c20cd193e3044bcf17798c33b9d67]
- conda-forge/noarch::wheel==0.45.1=pyhd8ed1ab_1[md5=75cb7132eb58d97896e173ef12ac9986]
- conda-forge/linux-64::cffi==1.17.1=py312h06ac9bb_0[md5=a861504bbea4161a9170b85d4d2be840]
- conda-forge/noarch::h2==4.1.0=pyhd8ed1ab_1[md5=825927dc7b0f287ef8d4d0011bb113b1]
- conda-forge/noarch::jsonpatch==1.33=pyhd8ed1ab_1[md5=cb60ae9cf02b9fcb8004dec4089e5691]
- conda-forge/linux-64::libmambapy==1.5.12=py312hbaee817_0[md5=88dd983e44c86cdde2817ecfa7d84d5a]
- conda-forge/noarch::pip==24.3.1=pyh8b19718_2[md5=04e691b9fadd93a8a9fad87a81d4fd8f]
- conda-forge/linux-64::ruamel.yaml==0.18.10=py312h66e93f0_0[md5=5260b7fb19694ee5bc4ed0ee7a2a769f]
- conda-forge/noarch::tqdm==4.67.1=pyhd8ed1ab_1[md5=9efbfdc37242619130ea42b1cc4ed861]
- conda-forge/linux-64::zstandard==0.23.0=py312hef9b889_1[md5=8b7069e9792ee4e5b4919a7a306d2e67]
- conda-forge/noarch::conda-package-streaming==0.11.0=pyhd8ed1ab_0[md5=bc9533d8616a97551ed144789bf9c1cd]
- conda-forge/noarch::urllib3==2.3.0=pyhd8ed1ab_0[md5=32674f8dbfb7b26410ed580dd3c10a29]
- conda-forge/noarch::requests==2.32.3=pyhd8ed1ab_1[md5=a9b9368f3701a417eac9edbcae7cb737]
- conda-forge/noarch::conda-package-handling==2.4.0=pyh7900ff3_2[md5=32c158f481b4fd7630c565030f7bc482]
- conda-forge/linux-64::conda==24.11.3=py312h7900ff3_0[md5=bdaca5d82db98d8b5639f058a818ff03]
- conda-forge/noarch::conda-libmamba-solver==24.9.0=pyhd8ed1ab_0[md5=45378d089c5f72c9c0d63d58414c645d]
- conda-forge/linux-64::mamba==1.5.12=py312h9460a1c_0[md5=59a9360536caad98732fdfdc320e41dc]
Package Version Build Channel Size
─────────────────────────────────────────────────────────────────────────────────────
Install:
─────────────────────────────────────────────────────────────────────────────────────
+ _libgcc_mutex 0.1 conda_forge conda-forge
+ ca-certificates 2024.12.14 hbcca054_0 conda-forge
+ ld_impl_linux-64 2.43 h712a8e2_2 conda-forge
+ pybind11-abi 4 hd8ed1ab_3 conda-forge
+ python_abi 3.12 5_cp312 conda-forge
+ tzdata 2025a h78e105d_0 conda-forge
+ libgomp 14.2.0 h77fa898_1 conda-forge
+ _openmp_mutex 4.5 2_gnu conda-forge
+ libgcc 14.2.0 h77fa898_1 conda-forge
+ c-ares 1.34.4 hb9d3cd8_0 conda-forge
+ libexpat 2.6.4 h5888daf_0 conda-forge
+ libgcc-ng 14.2.0 h69a702a_1 conda-forge
+ liblzma 5.6.3 hb9d3cd8_1 conda-forge
+ libstdcxx 14.2.0 hc0a3c3a_1 conda-forge
+ libzlib 1.3.1 hb9d3cd8_2 conda-forge
+ ncurses 6.5 h2d0b736_2 conda-forge
+ openssl 3.4.0 h7b32b05_1 conda-forge
+ reproc 14.2.5.post0 hb9d3cd8_0 conda-forge
+ bzip2 1.0.8 h4bc722e_7 conda-forge
+ keyutils 1.6.1 h166bdaf_0 conda-forge
+ libedit 3.1.20240808 pl5321h7949ede_0 conda-forge
+ libev 4.33 hd590300_2 conda-forge
+ libffi 3.4.2 h7f98852_5 conda-forge
+ libiconv 1.17 hd590300_2 conda-forge
+ libnsl 2.0.1 hd590300_0 conda-forge
+ libsqlite 3.48.0 hee588c1_0 conda-forge
+ libssh2 1.11.1 hf672d98_0 conda-forge
+ libstdcxx-ng 14.2.0 h4852527_1 conda-forge
+ libuuid 2.38.1 h0b41bf4_0 conda-forge
+ libxcrypt 4.4.36 hd590300_1 conda-forge
+ lz4-c 1.10.0 h5888daf_1 conda-forge
+ lzo 2.10 hd590300_1001 conda-forge
+ readline 8.2 h8228510_1 conda-forge
+ reproc-cpp 14.2.5.post0 h5888daf_0 conda-forge
+ tk 8.6.13 noxft_h4845f30_101 conda-forge
+ fmt 11.0.2 h434a139_0 conda-forge
+ krb5 1.21.3 h659f571_0 conda-forge
+ libnghttp2 1.64.0 h161d5f1_0 conda-forge
+ libsolv 0.7.30 h3509ff9_0 conda-forge
+ libxml2 2.13.5 h0d44e9d_1 conda-forge
+ python 3.12.8 h9e4cc4f_1_cpython conda-forge
+ yaml-cpp 0.8.0 h59595ed_0 conda-forge
+ zstd 1.5.6 ha6fb4c9_0 conda-forge
+ libarchive 3.7.7 h4585015_3 conda-forge
+ libcurl 8.11.1 h332b0f4_0 conda-forge
+ menuinst 2.2.0 py312h7900ff3_0 conda-forge
+ archspec 0.2.5 pyhd8ed1ab_0 conda-forge
+ boltons 24.0.0 pyhd8ed1ab_1 conda-forge
+ brotli-python 1.1.0 py312h2ec8cdc_2 conda-forge
+ certifi 2024.12.14 pyhd8ed1ab_0 conda-forge
+ charset-normalizer 3.4.1 pyhd8ed1ab_0 conda-forge
+ colorama 0.4.6 pyhd8ed1ab_1 conda-forge
+ distro 1.9.0 pyhd8ed1ab_1 conda-forge
+ frozendict 2.4.6 py312h66e93f0_0 conda-forge
+ hpack 4.0.0 pyhd8ed1ab_1 conda-forge
+ hyperframe 6.0.1 pyhd8ed1ab_1 conda-forge
+ idna 3.10 pyhd8ed1ab_1 conda-forge
+ jsonpointer 3.0.0 py312h7900ff3_1 conda-forge
+ libmamba 1.5.12 h49b8a8d_0 conda-forge
+ packaging 24.2 pyhd8ed1ab_2 conda-forge
+ platformdirs 4.3.6 pyhd8ed1ab_1 conda-forge
+ pluggy 1.5.0 pyhd8ed1ab_1 conda-forge
+ pycosat 0.6.6 py312h66e93f0_2 conda-forge
+ pycparser 2.22 pyh29332c3_1 conda-forge
+ pysocks 1.7.1 pyha55dd90_7 conda-forge
+ ruamel.yaml.clib 0.2.8 py312h66e93f0_1 conda-forge
+ setuptools 75.8.0 pyhff2d567_0 conda-forge
+ truststore 0.10.0 pyhd8ed1ab_0 conda-forge
+ wheel 0.45.1 pyhd8ed1ab_1 conda-forge
+ cffi 1.17.1 py312h06ac9bb_0 conda-forge
+ h2 4.1.0 pyhd8ed1ab_1 conda-forge
+ jsonpatch 1.33 pyhd8ed1ab_1 conda-forge
+ libmambapy 1.5.12 py312hbaee817_0 conda-forge
+ pip 24.3.1 pyh8b19718_2 conda-forge
+ ruamel.yaml 0.18.10 py312h66e93f0_0 conda-forge
+ tqdm 4.67.1 pyhd8ed1ab_1 conda-forge
+ zstandard 0.23.0 py312hef9b889_1 conda-forge
+ conda-package-streaming 0.11.0 pyhd8ed1ab_0 conda-forge
+ urllib3 2.3.0 pyhd8ed1ab_0 conda-forge
+ requests 2.32.3 pyhd8ed1ab_1 conda-forge
+ conda-package-handling 2.4.0 pyh7900ff3_2 conda-forge
+ conda 24.11.3 py312h7900ff3_0 conda-forge
+ conda-libmamba-solver 24.9.0 pyhd8ed1ab_0 conda-forge
+ mamba 1.5.12 py312h9460a1c_0 conda-forge
Summary:
Install: 84 packages
Total download: 0 B
─────────────────────────────────────────────────────────────────────────────────────
Transaction starting
Transaction finished
To activate this environment, use:
micromamba activate /tmp/Rtmp6NAbn8/file3b244a77819863/1.19.1/0
Or to execute a single command in this environment, use:
micromamba run -p /tmp/Rtmp6NAbn8/file3b244a77819863/1.19.1/0 mycommand
installation finished.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /tmp/Rtmp6NAbn8/file3b244a77819863/1.19.1/basilisk.utils/1.19.1/test
added / updated specs:
- python=3.12.8
The following packages will be downloaded:
package | build
---------------------------|-----------------
ca-certificates-2025.1.31 | hbcca054_0 154 KB conda-forge
libffi-3.4.6 | h2dba641_0 52 KB conda-forge
liblzma-5.6.4 | hb9d3cd8_0 109 KB conda-forge
libsqlite-3.48.0 | hee588c1_1 858 KB conda-forge
ncurses-6.5 | h2d0b736_3 871 KB conda-forge
openssl-3.4.1 | h7b32b05_0 2.8 MB conda-forge
pip-25.0.1 | pyh8b19718_0 1.2 MB conda-forge
------------------------------------------------------------
Total: 6.0 MB
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2025.1.31-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libexpat conda-forge/linux-64::libexpat-2.6.4-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.6-h2dba641_0
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
liblzma conda-forge/linux-64::liblzma-5.6.4-hb9d3cd8_0
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.48.0-hee588c1_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-h2d0b736_3
openssl conda-forge/linux-64::openssl-3.4.1-h7b32b05_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/linux-64::python-3.12.8-h9e4cc4f_1_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.8.0-pyhff2d567_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2025a-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /tmp/Rtmp6NAbn8/file3b244a77819863/1.19.1/basilisk.utils/1.19.1/test
added / updated specs:
- pandas=2.2.3
- python=3.12.8
The following packages will be downloaded:
package | build
---------------------------|-----------------
libblas-3.9.0 |28_h59b9bed_openblas 16 KB conda-forge
libcblas-3.9.0 |28_he106b2a_openblas 16 KB conda-forge
libgfortran-14.2.0 | h69a702a_1 53 KB conda-forge
libgfortran5-14.2.0 | hd5240d6_1 1.4 MB conda-forge
liblapack-3.9.0 |28_h7ac8fdf_openblas 16 KB conda-forge
libopenblas-0.3.28 |pthreads_h94d23a6_1 5.3 MB conda-forge
numpy-2.2.3 | py312h72c5963_0 8.1 MB conda-forge
pandas-2.2.3 | py312hf9745cd_1 14.7 MB conda-forge
python-dateutil-2.9.0.post0| pyhff2d567_1 217 KB conda-forge
python-tzdata-2025.1 | pyhd8ed1ab_0 140 KB conda-forge
pytz-2024.1 | pyhd8ed1ab_0 184 KB conda-forge
six-1.17.0 | pyhd8ed1ab_0 16 KB conda-forge
------------------------------------------------------------
Total: 30.1 MB
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-28_h59b9bed_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-28_he106b2a_openblas
libgfortran conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1
libgfortran5 conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1
liblapack conda-forge/linux-64::liblapack-3.9.0-28_h7ac8fdf_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.28-pthreads_h94d23a6_1
libstdcxx conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1
numpy conda-forge/linux-64::numpy-2.2.3-py312h72c5963_0
pandas conda-forge/linux-64::pandas-2.2.3-py312hf9745cd_1
python-dateutil conda-forge/noarch::python-dateutil-2.9.0.post0-pyhff2d567_1
python-tzdata conda-forge/noarch::python-tzdata-2025.1-pyhd8ed1ab_0
python_abi conda-forge/linux-64::python_abi-3.12-5_cp312
pytz conda-forge/noarch::pytz-2024.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0
Downloading and Extracting Packages: ...working...
pandas-2.2.3 | 14.7 MB | | 0%
numpy-2.2.3 | 8.1 MB | | 0% [A
libopenblas-0.3.28 | 5.3 MB | | 0% [A[A
libgfortran5-14.2.0 | 1.4 MB | | 0% [A[A[A
python-dateutil-2.9. | 217 KB | | 0% [A[A[A[A
pytz-2024.1 | 184 KB | | 0% [A[A[A[A[A
python-tzdata-2025.1 | 140 KB | | 0% [A[A[A[A[A[A
libgfortran-14.2.0 | 53 KB | | 0% [A[A[A[A[A[A[A
libblas-3.9.0 | 16 KB | | 0% [A[A[A[A[A[A[A[A
liblapack-3.9.0 | 16 KB | | 0% [A[A[A[A[A[A[A[A[A
libcblas-3.9.0 | 16 KB | | 0% [A[A[A[A[A[A[A[A[A[A
six-1.17.0 | 16 KB | | 0% [A[A[A[A[A[A[A[A[A[A[A
numpy-2.2.3 | 8.1 MB | | 1% [A
pandas-2.2.3 | 14.7 MB | | 1%
libopenblas-0.3.28 | 5.3 MB | | 1% [A[A
libgfortran5-14.2.0 | 1.4 MB | #2 | 12% [A[A[A
python-dateutil-2.9. | 217 KB | ######## | 81% [A[A[A[A
python-dateutil-2.9. | 217 KB | ########## | 100% [A[A[A[A
pytz-2024.1 | 184 KB | 8 | 9% [A[A[A[A[A
pytz-2024.1 | 184 KB | ########## | 100% [A[A[A[A[A
numpy-2.2.3 | 8.1 MB | ##5 | 26% [A
pandas-2.2.3 | 14.7 MB | #7 | 17%
libopenblas-0.3.28 | 5.3 MB | #### | 41% [A[A
python-tzdata-2025.1 | 140 KB | #1 | 11% [A[A[A[A[A[A
python-tzdata-2025.1 | 140 KB | ########## | 100% [A[A[A[A[A[A
libgfortran5-14.2.0 | 1.4 MB | ########## | 100% [A[A[A
libgfortran5-14.2.0 | 1.4 MB | ########## | 100% [A[A[A
python-dateutil-2.9. | 217 KB | ########## | 100% [A[A[A[A
libgfortran-14.2.0 | 53 KB | ### | 30% [A[A[A[A[A[A[A
libblas-3.9.0 | 16 KB | #########8 | 99% [A[A[A[A[A[A[A[A
libgfortran-14.2.0 | 53 KB | ########## | 100% [A[A[A[A[A[A[A
libblas-3.9.0 | 16 KB | ########## | 100% [A[A[A[A[A[A[A[A
numpy-2.2.3 | 8.1 MB | #####2 | 53% [A
pandas-2.2.3 | 14.7 MB | ###3 | 33%
libopenblas-0.3.28 | 5.3 MB | ########1 | 81% [A[A
libcblas-3.9.0 | 16 KB | #########9 | 99% [A[A[A[A[A[A[A[A[A[A
liblapack-3.9.0 | 16 KB | #########8 | 99% [A[A[A[A[A[A[A[A[A
libcblas-3.9.0 | 16 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A
liblapack-3.9.0 | 16 KB | ########## | 100% [A[A[A[A[A[A[A[A[A
six-1.17.0 | 16 KB | #########9 | 100% [A[A[A[A[A[A[A[A[A[A[A
six-1.17.0 | 16 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A
numpy-2.2.3 | 8.1 MB | ########3 | 84% [A
pandas-2.2.3 | 14.7 MB | #####1 | 51%
pandas-2.2.3 | 14.7 MB | #######4 | 75%
libopenblas-0.3.28 | 5.3 MB | ########## | 100% [A[A
libgfortran5-14.2.0 | 1.4 MB | ########## | 100% [A[A[A
numpy-2.2.3 | 8.1 MB | ########## | 100% [A
libgfortran-14.2.0 | 53 KB | ########## | 100% [A[A[A[A[A[A[A
libgfortran-14.2.0 | 53 KB | ########## | 100% [A[A[A[A[A[A[A
libblas-3.9.0 | 16 KB | ########## | 100% [A[A[A[A[A[A[A[A
libcblas-3.9.0 | 16 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A
liblapack-3.9.0 | 16 KB | ########## | 100% [A[A[A[A[A[A[A[A[A
pandas-2.2.3 | 14.7 MB | ########## | 100%
pandas-2.2.3 | 14.7 MB | ########## | 100%
six-1.17.0 | 16 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A
pytz-2024.1 | 184 KB | ########## | 100% [A[A[A[A[A
pytz-2024.1 | 184 KB | ########## | 100% [A[A[A[A[A
python-tzdata-2025.1 | 140 KB | ########## | 100% [A[A[A[A[A[A
python-tzdata-2025.1 | 140 KB | ########## | 100% [A[A[A[A[A[A
libopenblas-0.3.28 | 5.3 MB | ########## | 100% [A[A
numpy-2.2.3 | 8.1 MB | ########## | 100% [A
pandas-2.2.3 | 14.7 MB | ########## | 100%
[A
[A[A
[A[A[A
[A[A[A[A
[A[A[A[A[A
[A[A[A[A[A[A
[A[A[A[A[A[A[A
[A[A[A[A[A[A[A[A
[A[A[A[A[A[A[A[A[A
[A[A[A[A[A[A[A[A[A[A
[A[A[A[A[A[A[A[A[A[A[A done
Preparing transaction: - done
Verifying transaction: | / - \ | done
Executing transaction: - \ | / - \ | / - \ | / - done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.19.1
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2025.1.31-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libexpat conda-forge/linux-64::libexpat-2.6.4-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.6-h2dba641_0
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
liblzma conda-forge/linux-64::liblzma-5.6.4-hb9d3cd8_0
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.48.0-hee588c1_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-h2d0b736_3
openssl conda-forge/linux-64::openssl-3.4.1-h7b32b05_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/linux-64::python-3.12.8-h9e4cc4f_1_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.8.0-pyhff2d567_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2025a-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.19.1
added / updated specs:
- pandas=2.2.3
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2024.1
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-28_h59b9bed_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-28_he106b2a_openblas
libgfortran conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1
libgfortran5 conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1
liblapack conda-forge/linux-64::liblapack-3.9.0-28_h7ac8fdf_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.28-pthreads_h94d23a6_1
libstdcxx conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1
numpy conda-forge/linux-64::numpy-2.2.3-py312h72c5963_0
pandas conda-forge/linux-64::pandas-2.2.3-py312hf9745cd_1
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python-tzdata conda-forge/noarch::python-tzdata-2025.1-pyhd8ed1ab_0
python_abi conda-forge/linux-64::python_abi-3.12-5_cp312
pytz conda-forge/noarch::pytz-2024.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: - done
Verifying transaction: | / - \ done
Executing transaction: / - \ | / - \ | / - \ | / - \ | / - \ | / done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2025.1.31-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libexpat conda-forge/linux-64::libexpat-2.6.4-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.6-h2dba641_0
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
liblzma conda-forge/linux-64::liblzma-5.6.4-hb9d3cd8_0
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.48.0-hee588c1_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-h2d0b736_3
openssl conda-forge/linux-64::openssl-3.4.1-h7b32b05_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/linux-64::python-3.12.8-h9e4cc4f_1_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.8.0-pyhff2d567_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2025a-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- pandas=2.2.3
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2024.1
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-28_h59b9bed_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-28_he106b2a_openblas
libgfortran conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1
libgfortran5 conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1
liblapack conda-forge/linux-64::liblapack-3.9.0-28_h7ac8fdf_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.28-pthreads_h94d23a6_1
libstdcxx conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1
numpy conda-forge/linux-64::numpy-2.2.3-py312h72c5963_0
pandas conda-forge/linux-64::pandas-2.2.3-py312hf9745cd_1
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python-tzdata conda-forge/noarch::python-tzdata-2025.1-pyhd8ed1ab_0
python_abi conda-forge/linux-64::python_abi-3.12-5_cp312
pytz conda-forge/noarch::pytz-2024.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: - done
Verifying transaction: | / - \ | done
Executing transaction: - \ | / - \ | / - \ | / - \ | / - \ | / done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7
ca-certificates conda-forge/linux-64::ca-certificates-2025.1.31-hbcca054_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.43-h712a8e2_2
libexpat conda-forge/linux-64::libexpat-2.6.4-h5888daf_0
libffi conda-forge/linux-64::libffi-3.4.6-h2dba641_0
libgcc conda-forge/linux-64::libgcc-14.2.0-h77fa898_1
libgcc-ng conda-forge/linux-64::libgcc-ng-14.2.0-h69a702a_1
libgomp conda-forge/linux-64::libgomp-14.2.0-h77fa898_1
liblzma conda-forge/linux-64::liblzma-5.6.4-hb9d3cd8_0
libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0
libsqlite conda-forge/linux-64::libsqlite-3.48.0-hee588c1_1
libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0
libxcrypt conda-forge/linux-64::libxcrypt-4.4.36-hd590300_1
libzlib conda-forge/linux-64::libzlib-1.3.1-hb9d3cd8_2
ncurses conda-forge/linux-64::ncurses-6.5-h2d0b736_3
openssl conda-forge/linux-64::openssl-3.4.1-h7b32b05_0
pip conda-forge/noarch::pip-25.0.1-pyh8b19718_0
python conda-forge/linux-64::python-3.12.8-h9e4cc4f_1_cpython
readline conda-forge/linux-64::readline-8.2-h8228510_1
setuptools conda-forge/noarch::setuptools-75.8.0-pyhff2d567_0
tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101
tzdata conda-forge/noarch::tzdata-2025a-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.1.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- pandas=2.2.2
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2023.4
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-64::libblas-3.9.0-28_h59b9bed_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-28_he106b2a_openblas
libgfortran conda-forge/linux-64::libgfortran-14.2.0-h69a702a_1
libgfortran5 conda-forge/linux-64::libgfortran5-14.2.0-hd5240d6_1
liblapack conda-forge/linux-64::liblapack-3.9.0-28_h7ac8fdf_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.28-pthreads_h94d23a6_1
libstdcxx conda-forge/linux-64::libstdcxx-14.2.0-hc0a3c3a_1
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-14.2.0-h4852527_1
numpy conda-forge/linux-64::numpy-2.2.3-py312h72c5963_0
pandas conda-forge/linux-64::pandas-2.2.2-py312h1d6d2e6_1
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python-tzdata conda-forge/noarch::python-tzdata-2025.1-pyhd8ed1ab_0
python_abi conda-forge/linux-64::python_abi-3.12-5_cp312
pytz conda-forge/noarch::pytz-2023.4-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhd8ed1ab_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: - done
Verifying transaction: | / - \ done
Executing transaction: / - \ | / - \ | / - \ | / - \ | / - \ done
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 63 ]
>
> proc.time()
user system elapsed
196.736 83.374 319.650
basilisk.Rcheck/basilisk-Ex.timings
| name | user | system | elapsed | |
| BasiliskEnvironment-class | 0.002 | 0.000 | 0.002 | |
| PyPiLink | 0 | 0 | 0 | |
| basiliskOptions | 0 | 0 | 0 | |
| basiliskStart | 34.584 | 12.110 | 49.647 | |
| configureBasiliskEnv | 0 | 0 | 0 | |
| createLocalBasiliskEnv | 11.973 | 5.115 | 19.970 | |
| listPackages | 0.199 | 0.069 | 0.411 | |
| obtainEnvironmentPath | 0.002 | 0.000 | 0.002 | |
| setupBasiliskEnv | 0.002 | 0.000 | 0.002 | |
| useBasiliskEnv | 0.601 | 0.172 | 0.718 | |