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This page was generated on 2025-03-22 07:11 -0400 (Sat, 22 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 869
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Package 86/217HostnameOS / ArchINSTALLBUILDCHECK
flowViz 1.71.0  (landing page)
Mike Jiang
Snapshot Date: 2025-03-22 06:00 -0400 (Sat, 22 Mar 2025)
git_url: https://git.bioconductor.org/packages/flowViz
git_branch: devel
git_last_commit: c55bec5
git_last_commit_date: 2024-10-29 09:27:05 -0400 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    ERROR  

CHECK results for flowViz on teran2

To the developers/maintainers of the flowViz package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: flowViz
Version: 1.71.0
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD check --install=check:flowViz.install-out.txt --library=/home/rapidbuild/bbs-3.21-bioc-rapid/R/site-library --timings flowViz_1.71.0.tar.gz
StartedAt: 2025-03-22 07:01:23 -0400 (Sat, 22 Mar 2025)
EndedAt: 2025-03-22 07:01:29 -0400 (Sat, 22 Mar 2025)
EllapsedTime: 5.3 seconds
RetCode: 1
Status:   ERROR  
CheckDir: flowViz.Rcheck
Warnings: NA

Command output

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###
### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD check --install=check:flowViz.install-out.txt --library=/home/rapidbuild/bbs-3.21-bioc-rapid/R/site-library --timings flowViz_1.71.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/flowViz.Rcheck’
* using R Under development (unstable) (2025-01-20 r87609)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘flowViz/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowViz’ version ‘1.71.0’
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  download from 'https://CRAN.R-project.org/src/contrib/PACKAGES' failed
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowViz’ can be installed ... OK
* checking installed package size ... OK
Warning in file.symlink(from, to) :
  cannot symlink '/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/jquerylib' to '/tmp/RtmplhwHyH/RLIBS_ee53d46d547df/jquerylib', reason 'No space left on device'
Error in flink(where, tmplib) : 
  cannot link from /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/jquerylib
Execution halted

Installation output

flowViz.Rcheck/00install.out

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##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD INSTALL flowViz
###
##############################################################################
##############################################################################


* installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library’
* installing *source* package ‘flowViz’ ...
** this is package ‘flowViz’ version ‘1.71.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
in method for ‘densityplot’ with signature ‘x="formula",data="view"’: no definition for class “view”
in method for ‘densityplot’ with signature ‘x="formula",data="ncdfFlowSet"’: no definition for class “ncdfFlowSet”
in method for ‘densityplot’ with signature ‘x="formula",data="ncdfFlowList"’: no definition for class “ncdfFlowList”
in method for ‘histogram’ with signature ‘x="formula",data="ncdfFlowSet"’: no definition for class “ncdfFlowSet”
in method for ‘histogram’ with signature ‘x="formula",data="ncdfFlowList"’: no definition for class “ncdfFlowList”
in method for ‘glines’ with signature ‘x="norm2Filter",data="ANY"’: no definition for class “norm2Filter”
in method for ‘glines’ with signature ‘x="norm2Filter",data="logicalFilterResult"’: no definition for class “norm2Filter”
in method for ‘glines’ with signature ‘x="norm2Filter",data="flowFrame"’: no definition for class “norm2Filter”
in method for ‘glpoints’ with signature ‘x="norm2Filter",data="flowFrame",channels="character"’: no definition for class “norm2Filter”
in method for ‘glpolygon’ with signature ‘x="norm2Filter",data="ANY"’: no definition for class “norm2Filter”
in method for ‘glpolygon’ with signature ‘x="norm2Filter",data="logicalFilterResult"’: no definition for class “norm2Filter”
in method for ‘glpolygon’ with signature ‘x="norm2Filter",data="flowFrame"’: no definition for class “norm2Filter”
in method for ‘gpoints’ with signature ‘x="norm2Filter",data="flowFrame",channels="character"’: no definition for class “norm2Filter”
in method for ‘gpolygon’ with signature ‘x="norm2Filter",data="ANY"’: no definition for class “norm2Filter”
in method for ‘gpolygon’ with signature ‘x="norm2Filter",data="logicalFilterResult"’: no definition for class “norm2Filter”
in method for ‘gpolygon’ with signature ‘x="norm2Filter",data="flowFrame"’: no definition for class “norm2Filter”
in method for ‘xyplot’ with signature ‘x="formula",data="view"’: no definition for class “view”
in method for ‘xyplot’ with signature ‘x="view",data="missing"’: no definition for class “view”
in method for ‘xyplot’ with signature ‘x="formula",data="gateView"’: no definition for class “gateView”
in method for ‘xyplot’ with signature ‘x="formula",data="ncdfFlowSet"’: no definition for class “ncdfFlowSet”
in method for ‘xyplot’ with signature ‘x="formula",data="ncdfFlowList"’: no definition for class “ncdfFlowList”
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flowViz)

Tests output


Example timings