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HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 869
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Package 156/217HostnameOS / ArchINSTALLBUILDCHECK
preprocessCore 1.69.0  (landing page)
Ben Bolstad
Snapshot Date: 2025-03-22 12:00 -0400 (Sat, 22 Mar 2025)
git_url: https://git.bioconductor.org/packages/preprocessCore
git_branch: devel
git_last_commit: d2e67f1
git_last_commit_date: 2024-10-29 09:21:09 -0400 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    OK    ERROR  

INSTALL results for preprocessCore on teran2

To the developers/maintainers of the preprocessCore package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: preprocessCore
Version: 1.69.0
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD INSTALL preprocessCore
StartedAt: 2025-03-22 12:04:47 -0400 (Sat, 22 Mar 2025)
EndedAt: 2025-03-22 12:04:51 -0400 (Sat, 22 Mar 2025)
EllapsedTime: 4.3 seconds
RetCode: 1
Status:   ERROR  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD INSTALL preprocessCore
###
##############################################################################
##############################################################################


* installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library’
* installing *source* package ‘preprocessCore’ ...
** this is package ‘preprocessCore’ version ‘1.69.0’
** using staged installation
'config' variable 'CPP' is defunct
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for library containing pthread_create... none required
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdlib.h... (cached) yes
checking if PTHREAD_STACK_MIN is defined... yes
checking if R is using flexiblas... flexiblas not found. preprocessCore threading will not be disabled
configure: Enabling threading for preprocessCore
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include   -g -O2 -Wall -Werror=format-security  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic  -g -O2  -Wall -Werror=format-security -c R_colSummarize.c -o R_colSummarize.o
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include   -g -O2 -Wall -Werror=format-security  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic  -g -O2  -Wall -Werror=format-security -c R_plmd_interfaces.c -o R_plmd_interfaces.o
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include   -g -O2 -Wall -Werror=format-security  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic  -g -O2  -Wall -Werror=format-security -c R_plmr_interfaces.c -o R_plmr_interfaces.o
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include   -g -O2 -Wall -Werror=format-security  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic  -g -O2  -Wall -Werror=format-security -c R_rlm_interfaces.c -o R_rlm_interfaces.o
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include   -g -O2 -Wall -Werror=format-security  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic  -g -O2  -Wall -Werror=format-security -c R_subColSummarize.c -o R_subColSummarize.o
R_subColSummarize.c: In function ‘R_subColSummarize_avg_log’:
R_subColSummarize.c:117:9: warning: unused variable ‘j’ [-Wunused-variable]
  117 |   int i,j;
      |         ^
R_subColSummarize.c:115:7: warning: unused variable ‘ncur_rows’ [-Wunused-variable]
  115 |   int ncur_rows;
      |       ^~~~~~~~~
R_subColSummarize.c:111:8: warning: unused variable ‘cur_rows’ [-Wunused-variable]
  111 |   int *cur_rows;
      |        ^~~~~~~~
R_subColSummarize.c:109:21: warning: unused variable ‘buffer’ [-Wunused-variable]
  109 |   double *results, *buffer;
      |                     ^~~~~~
R_subColSummarize.c: In function ‘R_subColSummarize_log_avg’:
R_subColSummarize.c:290:9: warning: unused variable ‘j’ [-Wunused-variable]
  290 |   int i,j;
      |         ^
R_subColSummarize.c:288:7: warning: unused variable ‘ncur_rows’ [-Wunused-variable]
  288 |   int ncur_rows;
      |       ^~~~~~~~~
R_subColSummarize.c:284:8: warning: unused variable ‘cur_rows’ [-Wunused-variable]
  284 |   int *cur_rows;
      |        ^~~~~~~~
R_subColSummarize.c:282:21: warning: unused variable ‘buffer’ [-Wunused-variable]
  282 |   double *results, *buffer;
      |                     ^~~~~~
R_subColSummarize.c: In function ‘R_subColSummarize_avg’:
R_subColSummarize.c:466:9: warning: unused variable ‘j’ [-Wunused-variable]
  466 |   int i,j;
      |         ^
R_subColSummarize.c:464:7: warning: unused variable ‘ncur_rows’ [-Wunused-variable]
  464 |   int ncur_rows;
      |       ^~~~~~~~~
R_subColSummarize.c:460:8: warning: unused variable ‘cur_rows’ [-Wunused-variable]
  460 |   int *cur_rows;
      |        ^~~~~~~~
R_subColSummarize.c:458:21: warning: unused variable ‘buffer’ [-Wunused-variable]
  458 |   double *results, *buffer;
      |                     ^~~~~~
R_subColSummarize.c: In function ‘R_subColSummarize_biweight_log’:
R_subColSummarize.c:643:9: warning: unused variable ‘j’ [-Wunused-variable]
  643 |   int i,j;
      |         ^
R_subColSummarize.c:641:7: warning: unused variable ‘ncur_rows’ [-Wunused-variable]
  641 |   int ncur_rows;
      |       ^~~~~~~~~
R_subColSummarize.c:637:8: warning: unused variable ‘cur_rows’ [-Wunused-variable]
  637 |   int *cur_rows;
      |        ^~~~~~~~
R_subColSummarize.c:635:21: warning: unused variable ‘buffer’ [-Wunused-variable]
  635 |   double *results, *buffer;
      |                     ^~~~~~
R_subColSummarize.c: In function ‘R_subColSummarize_biweight’:
R_subColSummarize.c:819:9: warning: unused variable ‘j’ [-Wunused-variable]
  819 |   int i,j;
      |         ^
R_subColSummarize.c:817:7: warning: unused variable ‘ncur_rows’ [-Wunused-variable]
  817 |   int ncur_rows;
      |       ^~~~~~~~~
R_subColSummarize.c:813:8: warning: unused variable ‘cur_rows’ [-Wunused-variable]
  813 |   int *cur_rows;
      |        ^~~~~~~~
R_subColSummarize.c:811:21: warning: unused variable ‘buffer’ [-Wunused-variable]
  811 |   double *results, *buffer;
      |                     ^~~~~~
R_subColSummarize.c: In function ‘R_subColSummarize_median_log’:
R_subColSummarize.c:996:9: warning: unused variable ‘j’ [-Wunused-variable]
  996 |   int i,j;
      |         ^
R_subColSummarize.c:994:7: warning: unused variable ‘ncur_rows’ [-Wunused-variable]
  994 |   int ncur_rows;
      |       ^~~~~~~~~
R_subColSummarize.c:990:8: warning: unused variable ‘cur_rows’ [-Wunused-variable]
  990 |   int *cur_rows;
      |        ^~~~~~~~
R_subColSummarize.c:988:21: warning: unused variable ‘buffer’ [-Wunused-variable]
  988 |   double *results, *buffer;
      |                     ^~~~~~
R_subColSummarize.c: In function ‘R_subColSummarize_log_median’:
R_subColSummarize.c:1171:9: warning: unused variable ‘j’ [-Wunused-variable]
 1171 |   int i,j;
      |         ^
R_subColSummarize.c:1169:7: warning: unused variable ‘ncur_rows’ [-Wunused-variable]
 1169 |   int ncur_rows;
      |       ^~~~~~~~~
R_subColSummarize.c:1165:8: warning: unused variable ‘cur_rows’ [-Wunused-variable]
 1165 |   int *cur_rows;
      |        ^~~~~~~~
R_subColSummarize.c:1163:21: warning: unused variable ‘buffer’ [-Wunused-variable]
 1163 |   double *results, *buffer;
      |                     ^~~~~~
R_subColSummarize.c: In function ‘R_subColSummarize_median’:
R_subColSummarize.c:1345:9: warning: unused variable ‘j’ [-Wunused-variable]
 1345 |   int i,j;
      |         ^
R_subColSummarize.c:1343:7: warning: unused variable ‘ncur_rows’ [-Wunused-variable]
 1343 |   int ncur_rows;
      |       ^~~~~~~~~
R_subColSummarize.c:1339:8: warning: unused variable ‘cur_rows’ [-Wunused-variable]
 1339 |   int *cur_rows;
      |        ^~~~~~~~
R_subColSummarize.c:1337:21: warning: unused variable ‘buffer’ [-Wunused-variable]
 1337 |   double *results, *buffer;
      |                     ^~~~~~
R_subColSummarize.c: In function ‘R_subColSummarize_medianpolish_log’:
R_subColSummarize.c:1524:9: warning: unused variable ‘j’ [-Wunused-variable]
 1524 |   int i,j;
      |         ^
R_subColSummarize.c:1522:7: warning: unused variable ‘ncur_rows’ [-Wunused-variable]
 1522 |   int ncur_rows;
      |       ^~~~~~~~~
R_subColSummarize.c:1518:8: warning: unused variable ‘cur_rows’ [-Wunused-variable]
 1518 |   int *cur_rows;
      |        ^~~~~~~~
R_subColSummarize.c:1516:30: warning: variable ‘buffer2’ set but not used [-Wunused-but-set-variable]
 1516 |   double *results, *buffer, *buffer2;
      |                              ^~~~~~~
R_subColSummarize.c:1516:21: warning: variable ‘buffer’ set but not used [-Wunused-but-set-variable]
 1516 |   double *results, *buffer, *buffer2;
      |                     ^~~~~~
R_subColSummarize.c: In function ‘R_subColSummarize_medianpolish’:
R_subColSummarize.c:1704:9: warning: unused variable ‘j’ [-Wunused-variable]
 1704 |   int i,j;
      |         ^
R_subColSummarize.c:1702:7: warning: unused variable ‘ncur_rows’ [-Wunused-variable]
 1702 |   int ncur_rows;
      |       ^~~~~~~~~
R_subColSummarize.c:1698:8: warning: unused variable ‘cur_rows’ [-Wunused-variable]
 1698 |   int *cur_rows;
      |        ^~~~~~~~
R_subColSummarize.c:1696:30: warning: unused variable ‘buffer2’ [-Wunused-variable]
 1696 |   double *results, *buffer, *buffer2;
      |                              ^~~~~~~
R_subColSummarize.c:1696:21: warning: unused variable ‘buffer’ [-Wunused-variable]
 1696 |   double *results, *buffer, *buffer2;
      |                     ^~~~~~
R_subColSummarize.c: At top level:
R_subColSummarize.c:1660:14: warning: ‘subColSummarize_medianpolish_group’ defined but not used [-Wunused-function]
 1660 | static void *subColSummarize_medianpolish_group(void *data){
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include   -g -O2 -Wall -Werror=format-security  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic  -g -O2  -Wall -Werror=format-security -c R_subrcModel_interfaces.c -o R_subrcModel_interfaces.o
R_subrcModel_interfaces.c: In function ‘sub_rcModelSummarize_medianpolish_group’:
R_subrcModel_interfaces.c:91:11: warning: unused variable ‘se’ [-Wunused-variable]
   91 |   double *se;
      |           ^~
R_subrcModel_interfaces.c:90:11: warning: unused variable ‘weights’ [-Wunused-variable]
   90 |   double *weights;
      |           ^~~~~~~
R_subrcModel_interfaces.c:75:20: warning: unused variable ‘buffer2’ [-Wunused-variable]
   75 |   double *buffer, *buffer2;
      |                    ^~~~~~~
R_subrcModel_interfaces.c:75:11: warning: unused variable ‘buffer’ [-Wunused-variable]
   75 |   double *buffer, *buffer2;
      |           ^~~~~~
R_subrcModel_interfaces.c: In function ‘R_sub_rcModelSummarize_medianpolish’:
R_subrcModel_interfaces.c:173:9: warning: unused variable ‘j’ [-Wunused-variable]
  173 |   int i,j;
      |         ^
R_subrcModel_interfaces.c:171:7: warning: unused variable ‘ncur_rows’ [-Wunused-variable]
  171 |   int ncur_rows;
      |       ^~~~~~~~~
R_subrcModel_interfaces.c:167:8: warning: unused variable ‘cur_rows’ [-Wunused-variable]
  167 |   int *cur_rows;
      |        ^~~~~~~~
R_subrcModel_interfaces.c:165:30: warning: unused variable ‘buffer2’ [-Wunused-variable]
  165 |   double *results, *buffer, *buffer2;
      |                              ^~~~~~~
R_subrcModel_interfaces.c:165:21: warning: unused variable ‘buffer’ [-Wunused-variable]
  165 |   double *results, *buffer, *buffer2;
      |                     ^~~~~~
R_subrcModel_interfaces.c:165:11: warning: unused variable ‘results’ [-Wunused-variable]
  165 |   double *results, *buffer, *buffer2;
      |           ^~~~~~~
R_subrcModel_interfaces.c: In function ‘sub_rcModelSummarize_plm_group’:
R_subrcModel_interfaces.c:398:10: warning: unused variable ‘scale’ [-Wunused-variable]
  398 |   double scale=-1.0;
      |          ^~~~~
R_subrcModel_interfaces.c:377:20: warning: unused variable ‘buffer2’ [-Wunused-variable]
  377 |   double *buffer, *buffer2;
      |                    ^~~~~~~
R_subrcModel_interfaces.c:377:11: warning: unused variable ‘buffer’ [-Wunused-variable]
  377 |   double *buffer, *buffer2;
      |           ^~~~~~
R_subrcModel_interfaces.c: In function ‘R_sub_rcModelSummarize_plm’:
R_subrcModel_interfaces.c:493:9: warning: unused variable ‘j’ [-Wunused-variable]
  493 |   int i,j;
      |         ^
R_subrcModel_interfaces.c:491:7: warning: unused variable ‘ncur_rows’ [-Wunused-variable]
  491 |   int ncur_rows;
      |       ^~~~~~~~~
R_subrcModel_interfaces.c:487:8: warning: unused variable ‘cur_rows’ [-Wunused-variable]
  487 |   int *cur_rows;
      |        ^~~~~~~~
R_subrcModel_interfaces.c:485:30: warning: unused variable ‘buffer2’ [-Wunused-variable]
  485 |   double *results, *buffer, *buffer2;
      |                              ^~~~~~~
R_subrcModel_interfaces.c:485:21: warning: unused variable ‘buffer’ [-Wunused-variable]
  485 |   double *results, *buffer, *buffer2;
      |                     ^~~~~~
R_subrcModel_interfaces.c:485:11: warning: unused variable ‘results’ [-Wunused-variable]
  485 |   double *results, *buffer, *buffer2;
      |           ^~~~~~~
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include   -g -O2 -Wall -Werror=format-security  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic  -g -O2  -Wall -Werror=format-security -c avg.c -o avg.o
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include   -g -O2 -Wall -Werror=format-security  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic  -g -O2  -Wall -Werror=format-security -c avg_log.c -o avg_log.o
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include   -g -O2 -Wall -Werror=format-security  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic  -g -O2  -Wall -Werror=format-security -c biweight.c -o biweight.o
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include   -g -O2 -Wall -Werror=format-security  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic  -g -O2  -Wall -Werror=format-security -c init_package.c -o init_package.o
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include   -g -O2 -Wall -Werror=format-security  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic  -g -O2  -Wall -Werror=format-security -c lm.c -o lm.o
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include   -g -O2 -Wall -Werror=format-security  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic  -g -O2  -Wall -Werror=format-security -c log_avg.c -o log_avg.o
log_avg.c:236:1: fatal error: error writing to /tmp/ccLgR4If.s: No space left on device
  236 | }
      | ^
compilation terminated.
make: *** [/home/rapidbuild/bbs-3.21-bioc-rapid/R/etc/Makeconf:195: log_avg.o] Error 1
ERROR: compilation failed for package ‘preprocessCore’
* removing ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/preprocessCore’
* restoring previous ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/preprocessCore’