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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('BANDITS_1.29.0.tar.gz','quit-with-status'=TRUE)"
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── Installing BANDITS ──────────────────────────────────────────────────────────
✔ Package installed successfully
── BANDITS session metadata ────────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpIsu3kk/file588c05fc901f1/BANDITS
→ BiocVersion: 3.24
→ Package: BANDITS
→ PackageVersion: 1.29.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/BANDITS.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpIsu3kk/file588c05fc901f1/BANDITS
→ installDir: /tmp/RtmpIsu3kk/file588c04b6e5f1b
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on BANDITS ────────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 4.3.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
Warning in FUN(X[[i]], ...) :
  incomplete final line found on '/tmp/RtmpIsu3kk/file588c05fc901f1/BANDITS/man/BANDITS-package.Rd'
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
✖ ERROR: Remove Maintainer field. Use Authors@R [cre] designation.
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (14%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* Checking package installation calls in R code...
* Checking for library/require of BANDITS...
* Checking coding practice...
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/Class_BANDITS_data.R (line 57, column 12)
    • ...
    • R/run.R (line 389, column 15)
ℹ NOTE: Avoid the use of 'paste' in condition signals
  Found in files:
    • R/Class_BANDITS_data.R (line 49, column 11)
    • ...
    • R/filter_transcripts.R (line 115, column 11)
* Checking parsed R code in R directory, examples, vignettes...
ℹ NOTE: Avoid 'suppressWarnings'/'*Messages' if possible (found 8 times)
  • suppressWarnings() in R/create_data.R (line 138, column 5)
  • ...
  • suppressWarnings() in R/run.R (line 263, column 3)
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 20
functions greater than 50 lines.
  The longest 5 functions are:
    • create_data() (R/create_data.R): 610 lines
    • ...
    • MCMC_chain_MultiGroup_Together() (R/MCMC_Together_MultiGroup.R): 134
    lines
* Checking man page documentation...
! WARNING: Empty or missing \value sections found in man page(s).
  Found in files:
    • man/gene_tr_id.Rd
    • ...
    • man/results.Rd
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 1011 lines (21%) are > 80 characters long.
  First few lines:
    • R/Class_BANDITS_data.R#L3 #' \code{BANDITS_data} contains all the ...
    • ...
    • vignettes/BANDITS.Rmd#L490 plot_proportions(results_1_group, top_ge ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 2680 lines (57%) are
not.
  First few lines:
    • R/Class_BANDITS_data.R#L42 slots = representation(genes = ...
    • ...
    • vignettes/BANDITS.Rmd#L469 gene_to_transcript = ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 1 ERRORS | ⚠ 1 WARNINGS | ℹ 9 NOTES
ℹ See the BANDITS.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.