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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('BasicSTARRseq_1.41.0.tar.gz','quit-with-status'=TRUE)"
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── Installing BasicSTARRseq ────────────────────────────────────────────────────
✔ Package installed successfully
── BasicSTARRseq session metadata ──────────────────────────────────────────────
→ sourceDir: /tmp/RtmprSMHmO/file58e7045c2058a/BasicSTARRseq
→ BiocVersion: 3.24
→ Package: BasicSTARRseq
→ PackageVersion: 1.41.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/BasicSTARRseq.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmprSMHmO/file58e7045c2058a/BasicSTARRseq
→ installDir: /tmp/RtmprSMHmO/file58e703c848ba6
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on BasicSTARRseq ──────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
ℹ NOTE: Consider adding these automatically suggested biocViews: Sequencing,
Alignment, RNASeq, ImmunoOncology, DataImport
ℹ Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
✖ ERROR: Remove Maintainer field. Use Authors@R [cre] designation.
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'URL', 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (71%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
! WARNING: Use RMarkdown instead of Sweave 'Rnw' vignettes.
  Rnw vignette(s) found:
    • BasicSTARRseq.rnw
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • BasicSTARRseq.rnw
* Checking package installation calls in R code...
* Checking for library/require of BasicSTARRseq...
* Checking coding practice...
ℹ NOTE: Avoid sapply(); use vapply()
  Found in files:
    • R/getPeaks.R (line 91, column 34)
    • ...
    • R/getPeaks.R (line 117, column 47)
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/getPeaks.R (line 183, column 47)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There is 1
function greater than 50 lines.
  The longest 5 functions are:
    • definition() (R/getPeaks.R): 148 lines
* Checking man page documentation...
* Checking package NEWS...
* Checking unit tests...
ℹ NOTE: Consider adding unit tests. We strongly encourage them. See
https://contributions.bioconductor.org/tests.html
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 51 lines (9%) are > 80 characters long.
  First few lines:
    • BasicSTARRseq/NAMESPACE#L4 import('GenomicRanges', 'GenomicAlignmen ...
    • ...
    • vignettes/BasicSTARRseq.rnw#L102 \item \emph{STARR-seq - Principles a ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 223 lines (37%) are
not.
  First few lines:
    • R/AllClasses.r#L3 representation=list( ...
    • ...
    • vignettes/BasicSTARRseq.rnw#L50 pairedEnd=FALSE) ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 1 ERRORS | ⚠ 1 WARNINGS | ℹ 11 NOTES
ℹ See the BasicSTARRseq.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.