| Back to Build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-09 15:11 -0400 (Sat, 09 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4890 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 224/2374 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BIOCCHECK | BUILD BIN | ||||||||
| BioMVCClass 1.81.0 (landing page) Elizabeth Whalen
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | ERRORS | |||||||||
| See other builds for BioMVCClass in R Universe. | |||||||||||||||
|
To the developers/maintainers of the BioMVCClass package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BioMVCClass.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BioMVCClass |
| Version: 1.81.0 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('BioMVCClass_1.81.0.tar.gz','quit-with-status'=TRUE)" |
| StartedAt: 2026-05-09 06:23:29 -0400 (Sat, 09 May 2026) |
| EndedAt: 2026-05-09 06:23:42 -0400 (Sat, 09 May 2026) |
| EllapsedTime: 13.0 seconds |
| RetCode: 1 |
| Status: ERRORS |
| CheckDir: None |
| Warnings: NA |
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### Running command:
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### /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('BioMVCClass_1.81.0.tar.gz','quit-with-status'=TRUE)"
###
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── Installing BioMVCClass ──────────────────────────────────────────────────────
✔ Package installed successfully
── BioMVCClass session metadata ────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpzMQYtr/file5dd477da37709/BioMVCClass
→ BiocVersion: 3.24
→ Package: BioMVCClass
→ PackageVersion: 1.81.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/BioMVCClass.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpzMQYtr/file5dd477da37709/BioMVCClass
→ installDir: /tmp/RtmpzMQYtr/file5dd47190fd53c
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on BioMVCClass ────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 2.1.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
✖ ERROR: Remove Maintainer field. Use Authors@R [cre] designation.
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'URL', 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (80%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
! WARNING: Use RMarkdown instead of Sweave 'Rnw' vignettes.
Rnw vignette(s) found:
• BioMVCClass.Rnw
ℹ NOTE: 'sessionInfo' not found in vignette(s)
Missing from file(s):
• vignettes/BioMVCClass.Rnw
* Checking package installation calls in R code...
* Checking for library/require of BioMVCClass...
* Checking coding practice...
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
* Checking man page documentation...
✖ ERROR: At least 80% of man pages documenting exported objects must have
runnable examples.
The following pages do not:
• graphView-class.Rd
• GSE-class.Rd
• heatmapView-class.Rd
* Checking package NEWS...
ℹ NOTE: Consider adding a NEWS file, so your package news will be included in
Bioconductor release announcements.
* Checking unit tests...
ℹ NOTE: Consider adding unit tests. We strongly encourage them. See
https://contributions.bioconductor.org/tests.html
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 5 lines (1%) are > 80 characters long.
First few lines:
• R/MVC.R#L13 gsTestStat="numeric", e ...
• ...
• man/GSE-class.Rd#L41 \item{\code{expData}:}{the experimen ...
ℹ NOTE: Consider 4 spaces instead of tabs; 14 lines (2%) contain tabs.
First few lines:
• man/exprModel-class.Rd#L6 \description{ ...
• ...
• man/heatmapView-class.Rd#L53 } ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 99 lines (15%) are
not.
First few lines:
• R/MVC.R#L13 gsTestStat="numeric", e ...
• ...
• vignettes/BioMVCClass.Rnw#L138 \end{center} ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
✖ ERROR: Unable to find your email in the Support Site: HTTP 404 Not Found.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 3 ERRORS | ⚠ 1 WARNINGS | ℹ 10 NOTES
ℹ See the BioMVCClass.BiocCheck folder and run
browseVignettes(package = 'BiocCheck')
for details.