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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('BioQC_1.41.0.tar.gz','quit-with-status'=TRUE)"
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── Installing BioQC ────────────────────────────────────────────────────────────
✔ Package installed successfully
── BioQC session metadata ──────────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpUm6BWa/file5e0307ae567e0/BioQC
→ BiocVersion: 3.24
→ Package: BioQC
→ PackageVersion: 1.41.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/BioQC.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpUm6BWa/file5e0307ae567e0/BioQC
→ installDir: /tmp/RtmpUm6BWa/file5e0307c4f0a1e
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on BioQC ──────────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 3.5.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
ℹ NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R' with
'comment=c(ORCID="...")'
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (33%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* Checking package installation calls in R code...
* Checking for library/require of BioQC...
* Checking coding practice...
ℹ NOTE: Avoid sapply(); use vapply()
  Found in files:
    • R/AllClasses.R (line 7, column 13)
    • ...
    • R/uniqGenesetsByNamespace.R (line 75, column 21)
ℹ NOTE: Avoid 1:...; use seq_len() or seq_along()
  Found in files:
    • AllMethods.R (line 254, column 33)
    • ...
    • AllMethods.R (line 413, column 35)
ℹ NOTE: Avoid the use of 'paste' in condition signals
  Found in files:
    • R/leadingEdge.R (line 93, column 10)
    • ...
    • R/uniqGenesetsByNamespace.R (line 32, column 10)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There is 1
function greater than 50 lines.
  The longest 5 functions are:
    • uniqGenesetsByNamespace() (R/uniqGenesetsByNamespace.R): 51 lines
* Checking man page documentation...
! WARNING: Empty or missing \value sections found in man page(s).
  Found in files:
    • man/as.GmtList.Rd
    • ...
    • man/wmwTestInR.Rd
✖ ERROR: At least 80% of man pages documenting exported objects must have
runnable examples.
  The following pages do not:
    • filterBySize.Rd
    • ...
    • setGsNamespace.Rd
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 406 lines (11%) are > 80 characters long.
  First few lines:
    • R/AllClasses.R#L3 #' Use \code{setValidity("GmtList", "isV ...
    • ...
    • vignettes/BioQC.Rmd#L177 In summary, we observe that tissue heter ...
ℹ NOTE: Consider 4 spaces instead of tabs; 3 lines (0%) contain tabs.
  First few lines:
    • R/wmwTest.R#L95 "U"=3L, ...
    • R/wmwTest.R#L101 "f"=9L, ...
    • R/wmwTest.R#L103 "U2"=11L) ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 742 lines (21%) are
not.
  First few lines:
    • R/AllClasses.R#L7 isList <- sapply(object, is.list) ...
    • ...
    • vignettes/BioQC.Rmd#L167 "IsPancreasSign ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
✖ ERROR: Add package to Watched Tags in your Support Site profile; visit
https://support.bioconductor.org/accounts/edit/profile
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 2 ERRORS | ⚠ 1 WARNINGS | ℹ 11 NOTES
ℹ See the BioQC.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.