Back to Build/check report for BioC 3.24:   simplified   long
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This page was generated on 2026-05-09 15:11 -0400 (Sat, 09 May 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4890
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 194/2374HostnameOS / ArchINSTALLBUILDCHECKBIOCCHECKBUILD BIN
BiocBuildReporter 1.1.0  (landing page)
Lori Shepherd
Snapshot Date: 2026-05-08 13:45 -0400 (Fri, 08 May 2026)
git_url: https://git.bioconductor.org/packages/BiocBuildReporter
git_branch: devel
git_last_commit: 6ee33df
git_last_commit_date: 2026-04-28 09:06:35 -0400 (Tue, 28 Apr 2026)
nebbiolo2Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for BiocBuildReporter in R Universe.


BIOCCHECK results for BiocBuildReporter on nebbiolo2

To the developers/maintainers of the BiocBuildReporter package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocBuildReporter.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BiocBuildReporter
Version: 1.1.0
Command: /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('BiocBuildReporter_1.1.0.tar.gz','quit-with-status'=TRUE)"
StartedAt: 2026-05-09 06:22:33 -0400 (Sat, 09 May 2026)
EndedAt: 2026-05-09 06:22:50 -0400 (Sat, 09 May 2026)
EllapsedTime: 17.0 seconds
RetCode: 0
Status:   OK  
CheckDir: None
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('BiocBuildReporter_1.1.0.tar.gz','quit-with-status'=TRUE)"
###
##############################################################################
##############################################################################


── Installing BiocBuildReporter ────────────────────────────────────────────────
✔ Package installed successfully
── BiocBuildReporter session metadata ──────────────────────────────────────────
→ sourceDir: /tmp/Rtmpuq4dFy/file5bb515a6e66b6/BiocBuildReporter
→ BiocVersion: 3.24
→ Package: BiocBuildReporter
→ PackageVersion: 1.1.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/BiocBuildReporter.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/Rtmpuq4dFy/file5bb515a6e66b6/BiocBuildReporter
→ installDir: /tmp/Rtmpuq4dFy/file5bb5135f76335
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on BiocBuildReporter ──────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (33%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • BiocBuildReporter.Rmd
* Checking package installation calls in R code...
* Checking for library/require of BiocBuildReporter...
* Checking coding practice...
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 3
functions greater than 50 lines.
  The longest 5 functions are:
    • package_error_count() (R/parquetQueries.R): 60 lines
    • package_failures_over_time() (R/parquetQueries.R): 56 lines
    • get_package_build_results() (R/parquetQueries.R): 52 lines
* Checking man page documentation...
ℹ NOTE: Usage of dontrun / donttest tags found in man page examples. 8% of man
pages use at least one of these tags.
  Found in files:
    • get_all_bbs_tables.Rd
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 49 lines (3%) are > 80 characters long.
  First few lines:
    • R/helpers.R#L3 remote_url_base <- "https://mghp.osn.xse ...
    • ...
    • vignettes/BiocBuildReporter.Rmd#L570 For more information about specific
    func ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 113 lines (8%) are
not.
  First few lines:
    • R/globals.R#L3 "gap_days", "gap_hours", "git_bran ...
    • ...
    • vignettes/BiocBuildReporter.Rmd#L490 theme(axis.text.x =
    element_text(angle ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 0 ERRORS | ⚠ 0 WARNINGS | ℹ 7 NOTES
ℹ See the BiocBuildReporter.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.