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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('BiocHail_1.13.0.tar.gz','quit-with-status'=TRUE)"
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── Installing BiocHail ─────────────────────────────────────────────────────────
✔ Package installed successfully
── BiocHail session metadata ───────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpVWBU2p/file5c1561c8d248d/BiocHail
→ BiocVersion: 3.24
→ Package: BiocHail
→ PackageVersion: 1.13.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/BiocHail.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpVWBU2p/file5c1561c8d248d/BiocHail
→ installDir: /tmp/RtmpVWBU2p/file5c15670d5f7b1
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on BiocHail ───────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 4.3.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
ℹ NOTE: Consider adding these automatically suggested biocViews: DataImport
ℹ Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (33%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
! WARNING: Evaluate more vignette chunks.
ℹ 52 out of 59 code chunks = 88% unevaluated
ℹ 
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • gwas_tut.Rmd
    • large_t2t.Rmd
    • ukbb.Rmd
* Checking package installation calls in R code...
* Checking for library/require of BiocHail...
* Checking coding practice...
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/basilisk.R (line 4, column 13)
    • ...
    • R/hail_control.R (line 104, column 11)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
* Checking man page documentation...
ℹ NOTE: Usage of dontrun / donttest tags found in man page examples. 8% of man
pages use at least one of these tags.
  Found in files:
    • bare_hail.Rd
    • multipop_df.Rd
ℹ NOTE: Use donttest instead of dontrun.
  Found in files:
    • bare_hail.Rd
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 90 lines (6%) are > 80 characters long.
  First few lines:
    • R/as.data.frame.R#L13 as.data.frame <- function(x, row.names = ...
    • ...
    • vignettes/ukbb.Rmd#L150 - (Hard) What is the most significant fi ...
ℹ NOTE: Consider 4 spaces instead of tabs; 1 lines (0%) contain tabs.
  First few lines:
    • R/hail_control.R#L66 default_reference, global_seed, log, s ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 132 lines (9%) are
not.
  First few lines:
    • R/as.data.frame.R#L47 cx <- x$collect() ...
    • ...
    • vignettes/ukbb.Rmd#L59 'spark.hadoop.fs.gs.requester.pays.pro ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 0 ERRORS | ⚠ 1 WARNINGS | ℹ 11 NOTES
ℹ See the BiocHail.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.