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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('BufferedMatrix_1.77.0.tar.gz','quit-with-status'=TRUE)"
###
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── Installing BufferedMatrix ───────────────────────────────────────────────────
✔ Package installed successfully
── BufferedMatrix session metadata ─────────────────────────────────────────────
→ sourceDir: /tmp/Rtmplk3yW4/file600ae2d9ff163/BufferedMatrix
→ BiocVersion: 3.24
→ Package: BufferedMatrix
→ PackageVersion: 1.77.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/BufferedMatrix.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/Rtmplk3yW4/file600ae2d9ff163/BufferedMatrix
→ installDir: /tmp/Rtmplk3yW4/file600ae175210f6
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on BufferedMatrix ─────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 2.6.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
✖ ERROR: Remove Maintainer field. Use Authors@R [cre] designation.
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ NOTE: No Bioconductor dependencies detected. Note that some infrastructure
packages may not have Bioconductor dependencies. For more information, reach
out to the Bioconductor community and/or consider a CRAN submission.
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
! WARNING: Use RMarkdown instead of Sweave 'Rnw' vignettes.
  Rnw vignette(s) found:
    • BufferedMatrix.Rnw
ℹ NOTE: 'sessionInfo' not found in vignette(s)
  Missing from file(s):
    • vignettes/BufferedMatrix.Rnw
* Checking package installation calls in R code...
* Checking for library/require of BufferedMatrix...
* Checking coding practice...
ℹ NOTE: Avoid 1:...; use seq_len() or seq_along()
  Found in files:
    • as.BufferedMatrix.R (line 34, column 19)
    • ...
    • createBufferedMatrix.R (line 21, column 15)
! WARNING: Avoid class membership checks with class() / is() and == / !=; Use
is(x, 'class') for S4 classes
  Found in files:
    • as.BufferedMatrix.R (line 60, column 16)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 3
functions greater than 50 lines.
  The longest 5 functions are:
    • _anonymous_.836() (R/BufferedMatrix.R): 215 lines
    • _anonymous_.179() (R/BufferedMatrix.R): 162 lines
    • _anonymous_.46() (R/BufferedMatrix.R): 130 lines
* Checking man page documentation...
! WARNING: Empty or missing \value sections found in man page(s).
  Found in files:
    • man/as.BufferedMatrix.Rd
    • man/createBufferedMatrix.Rd
✖ ERROR: At least 80% of man pages documenting exported objects must have
runnable examples.
  The following pages do not:
    • as.BufferedMatrix.Rd
    • BufferedMatrix-class.Rd
    • createBufferedMatrix.Rd
* Checking package NEWS...
ℹ NOTE: Consider adding a NEWS file, so your package news will be included in
Bioconductor release announcements.
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 146 lines (6%) are > 80 characters long.
  First few lines:
    • R/allGenerics.R#L6 setGeneric("set.buffer.dim", function(x, ...
    • ...
    • vignettes/BufferedMatrix.Rnw#L383 Currently \Rclass{BufferedMatrix}
    object ...
ℹ NOTE: Consider 4 spaces instead of tabs; 3 lines (0%) contain tabs.
  First few lines:
    • BufferedMatrix/NAMESPACE#L9 "is.ColMode", ...
    • vignettes/BufferedMatrix.Rnw#L234 sum(x^(1/3)) ...
    • vignettes/BufferedMatrix.Rnw#L241 sum(x^power) ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 659 lines (29%) are
not.
  First few lines:
    • R/as.BufferedMatrix.R#L16 if (!(is.matrix(x) | is.vector(x))){ ...
    • ...
    • vignettes/BufferedMatrix.Rnw#L371 \Rfunction{is.ReadOnlyMode} & \\ ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
✖ ERROR: Add package to Watched Tags in your Support Site profile; visit
https://support.bioconductor.org/accounts/edit/profile
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 3 ERRORS | ⚠ 3 WARNINGS | ℹ 12 NOTES
ℹ See the BufferedMatrix.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.