| Back to Build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-09 15:11 -0400 (Sat, 09 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4890 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 555/2374 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BIOCCHECK | BUILD BIN | ||||||||
| DelayedTensor 1.19.0 (landing page) Koki Tsuyuzaki
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | WARNINGS | WARNINGS | |||||||||
| See other builds for DelayedTensor in R Universe. | |||||||||||||||
|
To the developers/maintainers of the DelayedTensor package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DelayedTensor.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: DelayedTensor |
| Version: 1.19.0 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('DelayedTensor_1.19.0.tar.gz','quit-with-status'=TRUE)" |
| StartedAt: 2026-05-09 06:39:18 -0400 (Sat, 09 May 2026) |
| EndedAt: 2026-05-09 06:40:26 -0400 (Sat, 09 May 2026) |
| EllapsedTime: 68.1 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: None |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('DelayedTensor_1.19.0.tar.gz','quit-with-status'=TRUE)"
###
##############################################################################
##############################################################################
── Installing DelayedTensor ────────────────────────────────────────────────────
✔ Package installed successfully
── DelayedTensor session metadata ──────────────────────────────────────────────
→ sourceDir: /tmp/Rtmp1dI7SJ/file80860538a732a/DelayedTensor
→ BiocVersion: 3.24
→ Package: DelayedTensor
→ PackageVersion: 1.19.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/DelayedTensor.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/Rtmp1dI7SJ/file80860538a732a/DelayedTensor
→ installDir: /tmp/Rtmp1dI7SJ/file8086070627a0d
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on DelayedTensor ──────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
ℹ NOTE: 'LazyData:' in the 'DESCRIPTION' should be set to false or removed
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 4.1.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
Warning in FUN(X[[i]], ...) :
incomplete final line found on '/tmp/Rtmp1dI7SJ/file80860538a732a/DelayedTensor/man/DelayedTensor-package.Rd'
Warning in FUN(X[[i]], ...) :
incomplete final line found on '/tmp/Rtmp1dI7SJ/file80860538a732a/DelayedTensor/man/einsum.Rd'
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
ℹ NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R' with
'comment=c(ORCID="...")'
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'URL' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (50%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* Checking package installation calls in R code...
* Checking for library/require of DelayedTensor...
* Checking coding practice...
ℹ NOTE: Avoid 'cat' and 'print' outside of 'show' methods
Found in files:
• cat() in R/Einsum.R (line 47, column 17)
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
Found in files:
• R/Einsum.R (line 233, column 9)
• R/Generics.R (line 580, column 14)
* Checking parsed R code in R directory, examples, vignettes...
ℹ NOTE: Avoid 'suppressWarnings'/'*Messages' if possible (found 3 times)
• suppressWarnings() in R/SVD.R (line 8, column 20)
• suppressWarnings() in R/SVD.R (line 12, column 20)
• suppressWarnings() in R/SVD.R (line 14, column 20)
* Checking function lengths...
* Checking man page documentation...
! WARNING: Empty or missing \format sections found in data man page(s).
Found in files:
• man/human_mid_brain.Rd
• man/mouse_mid_brain.Rd
Warning: multiple methods tables found for ‘kronecker’
Warning: multiple methods tables found for ‘kronecker’
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 3 lines (0%) are > 80 characters long.
First few lines:
• vignettes/DelayedTensor_2.Rmd#L83 Finally, the temporal directory to
store ...
• vignettes/DelayedTensor_2.Rmd#L85 Note that in many systems the `/var`
dir ...
• vignettes/DelayedTensor_2.Rmd#L239 On the other hand, the outer product
is ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 4 lines (0%) are not.
First few lines:
• vignettes/DelayedTensor_3.Rmd#L154 uranks=rep(2,dim(darr)[3]), wranks=rep
...
• ...
• vignettes/DelayedTensor_4.Rmd#L63 } ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 0 ERRORS | ⚠ 1 WARNINGS | ℹ 11 NOTES
ℹ See the DelayedTensor.BiocCheck folder and run
browseVignettes(package = 'BiocCheck')
for details.