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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('IMPCdata_1.49.0.tar.gz','quit-with-status'=TRUE)"
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── Installing IMPCdata ─────────────────────────────────────────────────────────
✔ Package installed successfully
── IMPCdata session metadata ───────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpLBE4C0/filebc8c01d119aa0/IMPCdata
→ BiocVersion: 3.24
→ Package: IMPCdata
→ PackageVersion: 1.49.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/IMPCdata.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpLBE4C0/filebc8c01d119aa0/IMPCdata
→ installDir: /tmp/RtmpLBE4C0/filebc8c06469ab80
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on IMPCdata ───────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 2.3.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ ExperimentData
* Checking for non-trivial biocViews...
✖ ERROR: Add biocViews other than ExperimentData
ℹ Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
✖ ERROR: Remove Maintainer field. Use Authors@R [cre] designation.
* Checking License: for restrictive use...
ℹ NOTE: License 'file LICENSE' unknown; refer to
$R_HOME/share/licenses/license.db
ℹ and https://choosealicense.com/appendix/ for more info.
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'URL', 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
! WARNING: No Bioconductor dependencies detected. Note that some infrastructure
packages may not have Bioconductor dependencies. For more information, reach
out to the Bioconductor community and/or consider a CRAN submission.
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
! WARNING: Use RMarkdown instead of Sweave 'Rnw' vignettes.
  Rnw vignette(s) found:
    • IMPCdata.Rnw
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • IMPCdata.Rnw
ℹ NOTE: 'sessionInfo' not found in vignette(s)
  Missing from file(s):
    • vignettes/IMPCdata.Rnw
* Checking package installation calls in R code...
* Checking for library/require of IMPCdata...
! WARNING: Avoid the use of 'library' or 'require' in R code
  Found in files:
    • library() in R/PhenObjects.R (line 18, column 1)
* Checking coding practice...
ℹ NOTE: Avoid 1:...; use seq_len() or seq_along()
  Found in files:
    • PhenDatasets.R (line 166, column 25)
    • ...
    • PhenObjects.R (line 357, column 29)
ℹ NOTE: Avoid 'cat' and 'print' outside of 'show' methods
  Found in files:
    • print() in R/PhenDatasets.R (line 43, column 5)
    • ...
    • print() in R/PhenObjects.R (line 395, column 5)
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/PhenDatasets.R (line 174, column 23)
    • ...
    • R/PhenDatasets.R (line 235, column 33)
ℹ NOTE: Avoid the use of 'paste' in condition signals
  Found in files:
    • R/PhenDatasets.R (line 130, column 13)
    • R/PhenDatasets.R (line 271, column 13)
    • R/PhenDatasets.R (line 272, column 13)
ℹ NOTE: Avoid redundant 'stop' and 'warn*' in signal conditions
  Found in files:
    • R/PhenDatasets.R (line 132, column 21)
    • R/PhenDatasets.R (line 135, column 21)
* Checking parsed R code in R directory, examples, vignettes...
ℹ NOTE: Avoid 'suppressWarnings'/'*Messages' if possible (found 2 times)
  • suppressWarnings() in R/PhenDatasets.R (line 52, column 44)
  • suppressWarnings() in R/PhenDatasets.R (line 63, column 44)
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 2
functions greater than 50 lines.
  The longest 5 functions are:
    • getIMPCTable() (R/PhenDatasets.R): 151 lines
    • getIMPCDataset() (R/PhenDatasets.R): 64 lines
* Checking man page documentation...
* Checking package NEWS...
* Checking unit tests...
ℹ NOTE: Consider adding unit tests. We strongly encourage them. See
https://contributions.bioconductor.org/tests.html
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 162 lines (11%) are > 80 characters long.
  First few lines:
    • R/PhenDatasets.R#L15 ## impress_sets.R contains functions tha ...
    • ...
    • vignettes/IMPCdata.Rnw#L247 concerning IMPCdata package new versions ...
ℹ NOTE: Consider 4 spaces instead of tabs; 24 lines (2%) contain tabs.
  First few lines:
    • R/PhenObjects.R#L28 if (length(facets)==0) { ...
    • ...
    • R/PhenObjects.R#L399 return (unwrapSolrPivotResults(zygositi ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 42 lines (3%) are not.
  First few lines:
    • R/PhenDatasets.R#L22 # Example of dataset with different met ...
    • ...
    • vignettes/IMPCdata.Rnw#L129 if the MGI is not assigned yet.  ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 2 ERRORS | ⚠ 3 WARNINGS | ℹ 18 NOTES
ℹ See the IMPCdata.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.