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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('KBoost_1.21.0.tar.gz','quit-with-status'=TRUE)"
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── Installing KBoost ───────────────────────────────────────────────────────────
✔ Package installed successfully
── KBoost session metadata ─────────────────────────────────────────────────────
→ sourceDir: /tmp/Rtmpj2pq32/filec72c175b6c33f/KBoost
→ BiocVersion: 3.24
→ Package: KBoost
→ PackageVersion: 1.21.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/KBoost.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/Rtmpj2pq32/filec72c175b6c33f/KBoost
→ installDir: /tmp/Rtmpj2pq32/filec72c17d72bcd6
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on KBoost ─────────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
ℹ NOTE: 'LazyData:' in the 'DESCRIPTION' should be set to false or removed
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 4.1 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
! WARNING: No Bioconductor dependencies detected. Note that some infrastructure
packages may not have Bioconductor dependencies. For more information, reach
out to the Bioconductor community and/or consider a CRAN submission.
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
ℹ NOTE: 'sessionInfo' not found in vignette(s)
  Missing from file(s):
    • vignettes/KBoost.Rmd
* Checking package installation calls in R code...
* Checking for library/require of KBoost...
* Checking coding practice...
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/AUPR_AUROC_matrix.R (line 35, column 11)
    • ...
    • R/irma_check.R (line 18, column 11)
ℹ NOTE: Avoid redundant 'stop' and 'warn*' in signal conditions
  Found in files:
    • R/get_prior_Gerstein.R (line 25, column 17)
    • R/KBoost.R (line 28, column 13)
! WARNING: Avoid T/F variables; If logical, use TRUE/FALSE
  Found 1 times:
    • F in R/KBoost.R (line 407, column 22)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 7
functions greater than 50 lines.
  The longest 5 functions are:
    • check_input() (R/KBoost.R): 96 lines
    • ...
    • log_BMA() (R/KBoost.R): 63 lines
* Checking man page documentation...
* Checking package NEWS...
! WARNING: news(package='KBoost') failed with news file: KBoost/NEWS.md:news()
failed to parse news file: KBoost/NEWS.md Refer to
https://contributions.bioconductor.org/news.html to be included in Bioconductor
release announcements.
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 165 lines (9%) are > 80 characters long.
  First few lines:
    • R/AUPR_AUROC_matrix.R#L16 #' aupr_auroc = AUPR_AUROC_matrix(Ne ...
    • ...
    • vignettes/KBoost.Rmd#L360 *Lambert, S.A., et al. The Human Transcr ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 0 ERRORS | ⚠ 3 WARNINGS | ℹ 10 NOTES
ℹ See the KBoost.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.