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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('OLINgui_1.87.0.tar.gz','quit-with-status'=TRUE)"
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── Installing OLINgui ──────────────────────────────────────────────────────────
✔ Package installed successfully
── OLINgui session metadata ────────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpiGqyLs/filef977d55540c87/OLINgui
→ BiocVersion: 3.24
→ Package: OLINgui
→ PackageVersion: 1.87.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/OLINgui.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpiGqyLs/filef977d55540c87/OLINgui
→ installDir: /tmp/RtmpiGqyLs/filef977d743771e2
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on OLINgui ────────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 2.0.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
ℹ NOTE: Consider adding these automatically suggested biocViews: Normalization
ℹ Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
✖ ERROR: Remove Maintainer field. Use Authors@R [cre] designation.
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (71%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
! WARNING: Use RMarkdown instead of Sweave 'Rnw' vignettes.
  Rnw vignette(s) found:
    • OLINgui.Rnw
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • OLINgui.Rnw
ℹ NOTE: 'sessionInfo' not found in vignette(s)
  Missing from file(s):
    • vignettes/OLINgui.Rnw
* Checking package installation calls in R code...
* Checking for library/require of OLINgui...
* Checking coding practice...
ℹ NOTE: Avoid 1:...; use seq_len() or seq_along()
  Found in files:
    • OLINgui.R (line 396, column 25)
    • ...
    • OLINgui.R (line 1352, column 24)
ℹ NOTE: Avoid 'cat' and 'print' outside of 'show' methods
  Found in files:
    • print() in R/OLINgui.R (line 713, column 11)
    • ...
    • print() in R/OLINgui.R (line 947, column 11)
! WARNING: Avoid class membership checks with class() / is() and == / !=; Use
is(x, 'class') for S4 classes
  Found in files:
    • OLINgui.R (line 306, column 35)
    • ...
    • OLINgui.R (line 399, column 39)
* Checking parsed R code in R directory, examples, vignettes...
ℹ NOTE: Avoid '<<-' if possible (found 10 times)
  • <<- in R/OLINgui.R (line 203, column 24)
  • ...
  • <<- in R/OLINgui.R (line 254, column 19)
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 7
functions greater than 50 lines.
  The longest 5 functions are:
    • OLINgui() (R/OLINgui.R): 1418 lines
    • ...
    • p.spa.args() (R/OLINgui.R): 76 lines
* Checking man page documentation...
Warning in fun(libname, pkgname) : couldn't connect to display ":1.0"
✖ ERROR: At least 80% of man pages documenting exported objects must have
runnable examples.
  The following pages do not:
    • OLINgui.Rd
* Checking package NEWS...
ℹ NOTE: Consider adding a NEWS file, so your package news will be included in
Bioconductor release announcements.
* Checking unit tests...
ℹ NOTE: Consider adding unit tests. We strongly encourage them. See
https://contributions.bioconductor.org/tests.html
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 212 lines (12%) are > 80 characters long.
  First few lines:
    • R/OLINgui.R#L18 gui.14ta <- tktext(gui,width=width1+2,h ...
    • ...
    • vignettes/OLINgui.Rnw#L309 \bibitem{toni2} M.E. Futschik and T. Cro ...
ℹ NOTE: Consider 4 spaces instead of tabs; 22 lines (1%) contain tabs.
  First few lines:
    • R/OLINgui.R#L264 } ...
    • ...
    • R/OLINgui.R#L542 obj.norm <- olin(object=get("ob ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 824 lines (46%) are
not.
  First few lines:
    • R/OLINgui.R#L74 ...
    • ...
    • vignettes/OLINgui.Rnw#L256 Each list elements corresponds to ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
✖ ERROR: Add package to Watched Tags in your Support Site profile; visit
https://support.bioconductor.org/accounts/edit/profile
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 3 ERRORS | ⚠ 2 WARNINGS | ℹ 16 NOTES
ℹ See the OLINgui.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.