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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('OPWeight_1.35.0.tar.gz','quit-with-status'=TRUE)"
###
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── Installing OPWeight ─────────────────────────────────────────────────────────
✔ Package installed successfully
── OPWeight session metadata ───────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpKXjVPY/filefb1ee3526fa16/OPWeight
→ BiocVersion: 3.24
→ Package: OPWeight
→ PackageVersion: 1.35.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/OPWeight.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpKXjVPY/filefb1ee3526fa16/OPWeight
→ installDir: /tmp/RtmpKXjVPY/filefb1ee404b738
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on OPWeight ───────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 3.4.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
ℹ NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R' with
'comment=c(ORCID="...")'
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (20%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • OPWeight.Rmd
✖ ERROR: Package installation calls found in vignette(s)
  Found in files:
    • vignettes/OPWeight.Rmd (chunk no. 2, line 48, column 5)
    • vignettes/OPWeight.Rmd (chunk no. 2, line 49, column 14)
! WARNING: Potential package installation calls found in vignette(s)
  Found in files:
    • vignettes/OPWeight.Rmd (chunk no. 2, line 48, column 5)
ℹ NOTE: 'sessionInfo' not found in vignette(s)
  Missing from file(s):
    • vignettes/OPWeight.Rmd
* Checking package installation calls in R code...
* Checking for library/require of OPWeight...
* Checking coding practice...
ℹ NOTE: Avoid sapply(); use vapply()
  Found in files:
    • R/opw.R (line 223, column 30)
    • ...
    • R/weight_continuous.R (line 67, column 21)
ℹ NOTE: Avoid 1:...; use seq_len() or seq_along()
  Found in files:
    • opw.R (line 182, column 67)
    • opw.R (line 223, column 37)
    • prob_rank_givenEffect_exact.R (line 71, column 11)
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/opw.R (line 157, column 11)
    • ...
    • R/prob_rank_givenEffect.R (line 66, column 11)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There is 1
function greater than 50 lines.
  The longest 5 functions are:
    • opw() (R/opw.R): 109 lines
* Checking man page documentation...
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 89 lines (8%) are > 80 characters long.
  First few lines:
    • R/opw.R#L32 #' @details If one wants to test \deqn{H ...
    • ...
    • vignettes/OPWeight.Rmd#L274 In the package `r Biocpkg("OPweight")`, ...
ℹ NOTE: Consider 4 spaces instead of tabs; 21 lines (2%) contain tabs.
  First few lines:
    • R/prob_rank_givenEffect.R#L65 { ...
    • ...
    • vignettes/OPWeight.Rmd#L222 } else {sort(tests, decreasing = TRUE)[1 ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 17 lines (1%) are not.
  First few lines:
    • R/opw.R#L224 ey = mean ...
    • ...
    • vignettes/OPWeight.Rmd#L260 effectType = "conti ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 1 ERRORS | ⚠ 1 WARNINGS | ℹ 14 NOTES
ℹ See the OPWeight.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.