| Back to Build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-09 15:11 -0400 (Sat, 09 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4890 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1842/2374 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BIOCCHECK | BUILD BIN | ||||||||
| ROCpAI 1.25.0 (landing page) Juan-Pedro Garcia
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | ERRORS | |||||||||
| See other builds for ROCpAI in R Universe. | |||||||||||||||
|
To the developers/maintainers of the ROCpAI package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ROCpAI.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ROCpAI |
| Version: 1.25.0 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('ROCpAI_1.25.0.tar.gz','quit-with-status'=TRUE)" |
| StartedAt: 2026-05-09 07:34:39 -0400 (Sat, 09 May 2026) |
| EndedAt: 2026-05-09 07:35:21 -0400 (Sat, 09 May 2026) |
| EllapsedTime: 42.0 seconds |
| RetCode: 1 |
| Status: ERRORS |
| CheckDir: None |
| Warnings: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('ROCpAI_1.25.0.tar.gz','quit-with-status'=TRUE)"
###
##############################################################################
##############################################################################
── Installing ROCpAI ───────────────────────────────────────────────────────────
✔ Package installed successfully
── ROCpAI session metadata ─────────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpOJUb5S/file12364f7bad62c/ROCpAI
→ BiocVersion: 3.24
→ Package: ROCpAI
→ PackageVersion: 1.25.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/ROCpAI.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpOJUb5S/file12364f7bad62c/ROCpAI
→ installDir: /tmp/RtmpOJUb5S/file12364f4bd1ec52
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on ROCpAI ─────────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
ℹ NOTE: Consider adding these automatically suggested biocViews: Sequencing,
Coverage
ℹ Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
ℹ NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R' with
'comment=c(ORCID="...")'
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'URL' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (20%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
ℹ NOTE: Vignette(s) found with missing chunk labels
Found in files:
• vignettes.Rmd
* Checking package installation calls in R code...
* Checking for library/require of ROCpAI...
* Checking coding practice...
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
Found in files:
• R/internal_function.R (line 46, column 19)
• ...
• R/TpAUCboot.R (line 72, column 32)
* Checking parsed R code in R directory, examples, vignettes...
ℹ Found @ in man/pointsCurve.Rd
ℹ NOTE: Use accessors; don't access S4 class slots via '@' in
examples/vignettes.
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 3
functions greater than 50 lines.
The longest 5 functions are:
• mcpAUC() (R/McpAUC.R): 67 lines
• tpAUC() (R/TpAUC.R): 57 lines
• mcpAUCboot() (R/MCpAUCboot.R): 53 lines
* Checking man page documentation...
* Checking package NEWS...
ℹ NOTE: Consider adding a NEWS file, so your package news will be included in
Bioconductor release announcements.
* Checking unit tests...
ℹ NOTE: Consider adding unit tests. We strongly encourage them. See
https://contributions.bioconductor.org/tests.html
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 49 lines (7%) are > 80 characters long.
First few lines:
• R/internal_function.R#L14 sen.proc<-append(sen.proc, sen.roc[j ...
• ...
• vignettes/vignettes.Rmd#L175 to ROCpAI github issues [https://github. ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 168 lines (23%) are
not.
First few lines:
• R/internal_function.R#L6 i.low<-min(which(fpr.roc >= low.limit) ...
• ...
• R/TpAUCboot.R#L77 return(x) ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
✖ ERROR: Add package to Watched Tags in your Support Site profile; visit
https://support.bioconductor.org/accounts/edit/profile
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 1 ERRORS | ⚠ 0 WARNINGS | ℹ 13 NOTES
ℹ See the ROCpAI.BiocCheck folder and run
browseVignettes(package = 'BiocCheck')
for details.