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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('a4Base_1.61.0.tar.gz','quit-with-status'=TRUE)"
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── Installing a4Base ───────────────────────────────────────────────────────────
✖ ERROR: /tmp/Rtmp69xpeE/file467dd454b0f7/a4Base must be installable and
loadable.
✔ Package installed successfully
── a4Base session metadata ─────────────────────────────────────────────────────
→ sourceDir: /tmp/Rtmp69xpeE/file467dd454b0f7/a4Base
→ BiocVersion: 3.24
→ Package: a4Base
→ PackageVersion: 1.61.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/a4Base.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/Rtmp69xpeE/file467dd454b0f7/a4Base
→ installDir: /tmp/Rtmp69xpeE/file467dd61c7f68
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on a4Base ─────────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
No vignettes found.
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
ℹ NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R' with
'comment=c(ORCID="...")'
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'URL', 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (54%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
✖ ERROR: No 'vignettes' directory.
* Checking package installation calls in R code...
* Checking for library/require of a4Base...
* Checking coding practice...
ℹ NOTE: Avoid sapply(); use vapply()
  Found in files:
    • R/computeLogRatio.R (line 139, column 12)
    • ...
    • R/replicates.R (line 19, column 33)
ℹ NOTE: Avoid 1:...; use seq_len() or seq_along()
  Found in files:
    • exprSetManipulations.R (line 80, column 62)
    • ...
    • profilePlot.R (line 601, column 61)
ℹ NOTE: Avoid 'cat' and 'print' outside of 'show' methods
  Found in files:
    • cat() in R/profilePlot.R (line 26, column 33)
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/heatmap.R (line 7, column 11)
    • ...
    • R/plotLogRatio.R (line 577, column 18)
ℹ NOTE: Avoid the use of 'paste' in condition signals
  Found in files:
    • R/computeLogRatio.R (line 95, column 10)
    • ...
    • R/volcanoPlot.R (line 237, column 16)
ℹ NOTE: Avoid redundant 'stop' and 'warn*' in signal conditions
  Found in files:
    • R/computeLogRatio.R (line 140, column 25)
    • R/plotLogRatio.R (line 182, column 12)
    • R/profilePlot.R (line 26, column 37)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 12
functions greater than 50 lines.
  The longest 5 functions are:
    • heatmap.expressionSet() (R/heatmap.R): 592 lines
    • ...
    • probabilitiesPlot() (R/logisticRegression.R): 109 lines
* Checking man page documentation...
! WARNING: Empty or missing \value sections found in man page(s).
  Found in files:
    • man/limmaReg.Rd
    • man/topTable-methods.Rd
Error in loadNamespace(pkgname, lib.loc = lib.loc) : 
  there is no package called ‘a4Base’
Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted