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### Running command:
###
###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('biosigner_1.41.0.tar.gz','quit-with-status'=TRUE)"
###
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── Installing biosigner ────────────────────────────────────────────────────────
✔ Package installed successfully
── biosigner session metadata ──────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpqPVE6F/file5e0325b9b6064/biosigner
→ BiocVersion: 3.24
→ Package: biosigner
→ PackageVersion: 1.41.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/biosigner.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpqPVE6F/file5e0325b9b6064/biosigner
→ installDir: /tmp/RtmpqPVE6F/file5e0326fc6d6ea
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on biosigner ──────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (33%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* Checking package installation calls in R code...
* Checking for library/require of biosigner...
* Checking coding practice...
ℹ NOTE: Avoid sapply(); use vapply()
  Found in files:
    • R/biosign-methods.R (line 343, column 22)
    • ...
    • R/plot-methods.R (line 164, column 41)
ℹ NOTE: Avoid 1:...; use seq_len() or seq_along()
  Found in files:
    • biosign-functions.R (line 72, column 40)
    • ...
    • plot-methods.R (line 471, column 26)
ℹ NOTE: Avoid 'cat' and 'print' outside of 'show' methods
  Found in files:
    • cat() in R/biosign-methods.R (line 94, column 17)
    • cat() in R/biosign-methods.R (line 519, column 17)
    • cat() in R/biosign-methods.R (line 695, column 17)
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/biosign-functions.R (line 571, column 22)
    • ...
    • R/plot-methods.R (line 104, column 40)
ℹ NOTE: Avoid the use of 'paste' in condition signals
  Found in files:
    • R/biosign-functions.R (line 613, column 17)
    • R/biosign-methods.R (line 32, column 23)
    • R/biosign-methods.R (line 990, column 25)
! WARNING: Remove set.seed usage (found 6 times)
  • set.seed() in R/biosign-methods.R (line 97, column 17)
  • ...
  • set.seed() in R/biosign-methods.R (line 256, column 21)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 14
functions greater than 50 lines.
  The longest 5 functions are:
    • _anonymous_.54() (R/plot-methods.R): 358 lines
    • ...
    • _anonymous_.372() (R/biosign-methods.R): 94 lines
* Checking man page documentation...
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 236 lines (6%) are > 80 characters long.
  First few lines:
    • R/allClasses.R#L3 #' An S4 class to store the the biosign ...
    • ...
    • vignettes/biosigner-vignette.Rmd#L672
    [hu6800.db](https://bioconductor.org/pac ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 1140 lines (30%) are
not.
  First few lines:
    • R/allClasses.R#L19 representation = representation ...
    • ...
    • vignettes/biosigner-vignette.Rmd#L680 get(probeC, env = hu6800GENENAME)
    ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
✖ ERROR: Add package to Watched Tags in your Support Site profile; visit
https://support.bioconductor.org/accounts/edit/profile
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 1 ERRORS | ⚠ 1 WARNINGS | ℹ 11 NOTES
ℹ See the biosigner.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.