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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('clusterStab_1.85.0.tar.gz','quit-with-status'=TRUE)"
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── Installing clusterStab ──────────────────────────────────────────────────────
✔ Package installed successfully
── clusterStab session metadata ────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpbGiCri/file7672d205e7426/clusterStab
→ BiocVersion: 3.24
→ Package: clusterStab
→ PackageVersion: 1.85.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/clusterStab.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpbGiCri/file7672d205e7426/clusterStab
→ installDir: /tmp/RtmpbGiCri/file7672d264e505c
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on clusterStab ────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 1.9.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
ℹ NOTE: Consider adding these automatically suggested biocViews: Microarray,
GUI
ℹ Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
✖ ERROR: Remove Maintainer field. Use Authors@R [cre] designation.
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'URL', 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (50%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
! WARNING: Use RMarkdown instead of Sweave 'Rnw' vignettes.
  Rnw vignette(s) found:
    • clusterStab.Rnw
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • clusterStab.Rnw
ℹ NOTE: 'sessionInfo' not found in vignette(s)
  Missing from file(s):
    • vignettes/clusterStab.Rnw
* Checking package installation calls in R code...
* Checking for library/require of clusterStab...
! WARNING: Avoid the use of 'library' or 'require' in R code
  Found in files:
    • require() in R/clusterStab.R (line 62, column 3)
    • require() in R/zzz.R (line 2, column 40)
* Checking coding practice...
ℹ NOTE: Avoid sapply(); use vapply()
  Found in files:
    • R/clusterStab.R (line 227, column 18)
    • R/methods-benhur.R (line 55, column 36)
ℹ NOTE: Avoid 1:...; use seq_len() or seq_along()
  Found in files:
    • clusterStab.R (line 78, column 12)
    • ...
    • methods-clusterComp.R (line 25, column 63)
! WARNING: Remove set.seed usage (found 2 times)
  • set.seed() in R/clusterStab.R (line 61, column 5)
  • set.seed() in R/clusterStab.R (line 188, column 5)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 2
functions greater than 50 lines.
  The longest 5 functions are:
    • do.benhur() (R/clusterStab.R): 82 lines
    • do.clusterComp() (R/clusterStab.R): 52 lines
* Checking man page documentation...
* Checking package NEWS...
ℹ NOTE: Consider adding a NEWS file, so your package news will be included in
Bioconductor release announcements.
* Checking unit tests...
ℹ NOTE: Consider adding unit tests. We strongly encourage them. See
https://contributions.bioconductor.org/tests.html
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 59 lines (7%) are > 80 characters long.
  First few lines:
    • R/clusterStab.R#L11 ## 3-22-05 Added S4 classes benhur and ...
    • ...
    • vignettes/clusterStab.Rnw#L173 Once we have decided how many clusters t
    ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 209 lines (26%) are
not.
  First few lines:
    • R/AllClasses.R#L4 size = ...
    • ...
    • man/clusterComp.Rd#L51 for microarray data in cancer studies ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
✖ ERROR: Add package to Watched Tags in your Support Site profile; visit
https://support.bioconductor.org/accounts/edit/profile
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 2 ERRORS | ⚠ 3 WARNINGS | ℹ 14 NOTES
ℹ See the clusterStab.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.