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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('convert_1.89.0.tar.gz','quit-with-status'=TRUE)"
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── Installing convert ──────────────────────────────────────────────────────────
✔ Package installed successfully
── convert session metadata ────────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpGpgy4C/file7959d104fa75a/convert
→ BiocVersion: 3.24
→ Package: convert
→ PackageVersion: 1.89.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/convert.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpGpgy4C/file7959d104fa75a/convert
→ installDir: /tmp/RtmpGpgy4C/file7959d47bbe1a3
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on convert ────────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 2.6.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
ℹ NOTE: Consider adding these automatically suggested biocViews:
GeneExpression, Transcription, Sequencing, OneChannel, Metabolomics,
Proteomics, Epigenetics, Cheminformatics, Transcriptomics, GeneTarget,
Normalization, Preprocessing, Bayesian, Clustering, Regression, ExonArray,
RNASeq, MicroRNAArray, mRNAMicroarray, ProprietaryPlatforms, CellBiology,
BiomedicalInformatics, FunctionalGenomics, SystemsBiology, ImmunoOncology,
AlternativeSplicing, DifferentialExpression, DifferentialSplicing,
GeneSetEnrichment, BatchEffect, MultipleComparison, QualityControl, TimeCourse,
DataImport
ℹ Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
✖ ERROR: Remove Maintainer field. Use Authors@R [cre] designation.
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (60%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
! WARNING: Use RMarkdown instead of Sweave 'Rnw' vignettes.
  Rnw vignette(s) found:
    • convert.Rnw
ℹ NOTE: 'sessionInfo' not found in vignette(s)
  Missing from file(s):
    • vignettes/convert.Rnw
* Checking package installation calls in R code...
* Checking for library/require of convert...
* Checking coding practice...
ℹ NOTE: Avoid sapply(); use vapply()
  Found in files:
    • R/RGList_to_NChannelSet.R (line 12, column 16)
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/marrayRaw_to_NChannelSet.R (line 19, column 17)
    • R/marrayRaw_to_NChannelSet.R (line 21, column 17)
* Checking parsed R code in R directory, examples, vignettes...
ℹ Found @ in man/coerce.Rd
ℹ NOTE: Use accessors; don't access S4 class slots via '@' in
examples/vignettes.
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 2
functions greater than 50 lines.
  The longest 5 functions are:
    • _anonymous_.4() (R/RGList_to_NChannelSet.R): 67 lines
    • _anonymous_.4() (R/marrayRaw_to_NChannelSet.R): 59 lines
* Checking man page documentation...
! WARNING: Empty or missing \value sections found in man page(s).
  Found in files:
    • man/coerce.Rd
* Checking package NEWS...
ℹ NOTE: Consider adding a NEWS file, so your package news will be included in
Bioconductor release announcements.
* Checking unit tests...
ℹ NOTE: Consider adding unit tests. We strongly encourage them. See
https://contributions.bioconductor.org/tests.html
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Add content to the empty file convert/NAMESPACE
ℹ NOTE: Consider shorter lines; 16 lines (4%) are > 80 characters long.
  First few lines:
    • R/RGList_to_NChannelSet.R#L52 warning("RGList 'genes' contains c ...
    • ...
    • vignettes/convert.Rnw#L58 \texttt{MAList} and \texttt{marrayNorm}, ...
ℹ NOTE: Consider 4 spaces instead of tabs; 89 lines (20%) contain tabs.
  First few lines:
    • R/setas.R#L1 # SETAS.R ...
    • ...
    • vignettes/convert.Rnw#L55 log-ratios ready for cluster analysis o ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 59 lines (13%) are
not.
  First few lines:
    • R/marrayRaw_to_NChannelSet.R#L5 ...
    • ...
    • vignettes/convert.Rnw#L41 and $A$-values and associated infor ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 1 ERRORS | ⚠ 2 WARNINGS | ℹ 16 NOTES
ℹ See the convert.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.