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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('cytomapper_1.25.0.tar.gz','quit-with-status'=TRUE)"
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── Installing cytomapper ───────────────────────────────────────────────────────
✔ Package installed successfully
── cytomapper session metadata ─────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpPxg4EU/file7ce1662c7eb2a/cytomapper
→ BiocVersion: 3.24
→ Package: cytomapper
→ PackageVersion: 1.25.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/cytomapper.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpPxg4EU/file7ce1662c7eb2a/cytomapper
→ installDir: /tmp/RtmpPxg4EU/file7ce167cbc5dab
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on cytomapper ─────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 4.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
ℹ NOTE: Consider adding these automatically suggested biocViews: MultiChannel,
Spatial
ℹ Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (35%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • cytomapper_ondisk.Rmd
    • cytomapper.Rmd
* Checking package installation calls in R code...
* Checking for library/require of cytomapper...
* Checking coding practice...
ℹ NOTE: Avoid the use of 'paste' in condition signals
  Found in files:
    • R/plotting-param.R (line 376, column 22)
    • ...
    • R/validityChecks.R (line 541, column 22)
! WARNING: Avoid class membership checks with class() / is() and == / !=; Use
is(x, 'class') for S4 classes
  Found in files:
    • plotting-param.R (line 669, column 26)
    • plotting-param.R (line 688, column 26)
* Checking parsed R code in R directory, examples, vignettes...
ℹ NOTE: Avoid 'suppressWarnings'/'*Messages' if possible (found 6 times)
  • suppressMessages() in R/server-utils.R (line 722, column 13)
  • ...
  • suppressMessages() in R/server-utils.R (line 826, column 17)
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 38
functions greater than 50 lines.
  The longest 5 functions are:
    • normImages() (R/CytoImageList-utils.R): 279 lines
    • ...
    • .plottingParam() (R/plotting-param.R): 148 lines
* Checking man page documentation...
! WARNING: Empty or missing \value sections found in man page(s).
  Found in files:
    • man/CytoImageList-naming.Rd
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
ℹ NOTE: skip_on_bioc() found in testthat files: test_plotting-param_ondisk.R
test_plotting-param.R
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 69 lines (1%) are > 80 characters long.
  First few lines:
    • R/CytoImageList.R#L140 stop("When storing the i ...
    • ...
    • vignettes/cytomapper.Rmd#L910 [cowplot](https://cran.r-project.org/web
    ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 82 lines (1%) are not.
  First few lines:
    • R/compImage.R#L82 function(u) ...
    • ...
    • vignettes/cytomapper_ondisk.Rmd#L67 on_disk = T ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
✖ ERROR: Add package to Watched Tags in your Support Site profile; visit
https://support.bioconductor.org/accounts/edit/profile
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 1 ERRORS | ⚠ 2 WARNINGS | ℹ 11 NOTES
ℹ See the cytomapper.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.