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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('dearseq_1.25.0.tar.gz','quit-with-status'=TRUE)"
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── Installing dearseq ──────────────────────────────────────────────────────────
✔ Package installed successfully
── dearseq session metadata ────────────────────────────────────────────────────
→ sourceDir: /tmp/Rtmpqzz4FZ/file7e56b7a1c3fa1/dearseq
→ BiocVersion: 3.24
→ Package: dearseq
→ PackageVersion: 1.25.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/dearseq.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/Rtmpqzz4FZ/file7e56b7a1c3fa1/dearseq
→ installDir: /tmp/Rtmpqzz4FZ/file7e56b778892fd
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on dearseq ────────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 3.6.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'URL' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
! WARNING: No Bioconductor dependencies detected. Note that some infrastructure
packages may not have Bioconductor dependencies. For more information, reach
out to the Bioconductor community and/or consider a CRAN submission.
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • dearseqUserguide.Rmd
Warning in checkVigEvalAllFalse(.BiocPackage) :
  More than one `opts_chunk$set()` in /tmp/Rtmpqzz4FZ/file7e56b7a1c3fa1/dearseq/vignettes/dearseqUserguide.Rmd
* Checking package installation calls in R code...
* Checking for library/require of dearseq...
* Checking coding practice...
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 11
functions greater than 50 lines.
  The longest 5 functions are:
    • dgsa_seq() (R/dgsa_seq.R): 470 lines
    • ...
    • vc_score() (R/vc_score.R): 153 lines
* Checking man page documentation...
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 98 lines (2%) are > 80 characters long.
  First few lines:
    • R/baduel.R#L20 #'\href{https://doi.org/10.1093/biostati ...
    • ...
    • vignettes/dearseqUserguide.Rmd#L310 More details can be found on
    [Bioconduct ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 749 lines (19%) are
not.
  First few lines:
    • R/dear_seq.R#L240 covariates =NULL, ...
    • ...
    • vignettes/dearseqUserguide.Rmd#L267 ggplot2::xlab("Age (weeks)") ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 0 ERRORS | ⚠ 1 WARNINGS | ℹ 8 NOTES
ℹ See the dearseq.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.