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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('epivizrChart_1.35.0.tar.gz','quit-with-status'=TRUE)"
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── Installing epivizrChart ─────────────────────────────────────────────────────
✔ Package installed successfully
── epivizrChart session metadata ───────────────────────────────────────────────
→ sourceDir: /tmp/RtmpYP6I6P/file9263267f3d678/epivizrChart
→ BiocVersion: 3.24
→ Package: epivizrChart
→ PackageVersion: 1.35.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/epivizrChart.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpYP6I6P/file9263267f3d678/epivizrChart
→ installDir: /tmp/RtmpYP6I6P/file926324c512285
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on epivizrChart ───────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
ℹ NOTE: 'LazyData:' in the 'DESCRIPTION' should be set to false or removed
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 3.5.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
ℹ NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R' with
'comment=c(ORCID="...")'
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'URL', 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (50%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • IntegrationWithIGVjs.Rmd
    • ...
    • VisualizeSumExp.Rmd
ℹ NOTE: 'sessionInfo' not found in vignette(s)
  Missing from file(s):
    • vignettes/IntegrationWithIGVjs.Rmd
    • ...
    • vignettes/VisualizeSumExp.Rmd
* Checking package installation calls in R code...
* Checking for library/require of epivizrChart...
* Checking coding practice...
ℹ NOTE: Avoid sapply(); use vapply()
  Found in files:
    • R/EpivizEnvironment-class.R (line 122, column 20)
    • ...
    • R/utils.R (line 72, column 12)
ℹ NOTE: Avoid 'cat' and 'print' outside of 'show' methods
  Found in files:
    • print() in R/EpivizChart-class.R (line 158, column 7)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 3
functions greater than 50 lines.
  The longest 5 functions are:
    • epivizChart() (R/util-inits.R): 123 lines
    • register_shiny_provider() (R/EpivizChartDataMgr-class.R): 111 lines
    • get_dependencies() (R/EpivizWebComponent-class.R): 51 lines
* Checking man page documentation...
! WARNING: Empty or missing \value sections found in man page(s).
  Found in files:
    • man/append_region-methods.Rd
    • ...
    • man/StackedLineTrack-methods.Rd
✖ ERROR: At least 80% of man pages documenting exported objects must have
runnable examples.
  The following pages do not:
    • append_region-methods.Rd
    • ...
    • StackedLineTrack-methods.Rd
ℹ NOTE: Usage of dontrun / donttest tags found in man page examples. 2% of man
pages use at least one of these tags.
  Found in files:
    • plot-EpivizEnvironment-ANY-method.Rd
ℹ NOTE: Use donttest instead of dontrun.
  Found in files:
    • plot-EpivizEnvironment-ANY-method.Rd
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
ℹ NOTE: skip_on_bioc() found in testthat files: test-chart.R test-env.R
test-nav.R
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 134 lines (4%) are > 80 characters long.
  First few lines:
    • R/EpivizChart-class.R#L9 #' @field parent An object of class [`Ep ...
    • ...
    • vignettes/VisualizeSumExp.Rmd#L41 region_linetrack <-
    epivizNav$plot(sumex ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 1089 lines (35%) are
not.
  First few lines:
    • R/EpivizChart-class.R#L15 contains="EpivizViewComponent", ...
    • ...
    • vignettes/VisualizeSumExp.Rmd#L59 } ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
✖ ERROR: Add package to Watched Tags in your Support Site profile; visit
https://support.bioconductor.org/accounts/edit/profile
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 2 ERRORS | ⚠ 1 WARNINGS | ℹ 16 NOTES
ℹ See the epivizrChart.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.