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### Running command:
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###   /home/biocbuild/bbs-3.24-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('fdrame_1.85.0.tar.gz','quit-with-status'=TRUE)"
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── Installing fdrame ───────────────────────────────────────────────────────────
✔ Package installed successfully
── fdrame session metadata ─────────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpwiiDkV/file99620231ee5c6/fdrame
→ BiocVersion: 3.24
→ Package: fdrame
→ PackageVersion: 1.85.0
→ BiocCheckDir: /home/biocbuild/bbs-3.24-bioc/meat/fdrame.BiocCheck
→ BiocCheckVersion: 1.49.4
→ sourceDir: /tmp/RtmpwiiDkV/file99620231ee5c6/fdrame
→ installDir: /tmp/RtmpwiiDkV/file99620409208a6
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on fdrame ─────────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
Warning in FUN(X[[i]], ...) :
  incomplete final line found on '/tmp/RtmpwiiDkV/file99620231ee5c6/fdrame/man/fdrgui.Rd'
ℹ NOTE: Consider adding these automatically suggested biocViews:
ExperimentalDesign
ℹ Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking if 'Package:' field matches directory / tarball...
* Checking for Version: field...
✖ ERROR: Remove Maintainer field. Use Authors@R [cre] designation.
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'URL', 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
! WARNING: No Bioconductor dependencies detected. Note that some infrastructure
packages may not have Bioconductor dependencies. For more information, reach
out to the Bioconductor community and/or consider a CRAN submission.
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
! WARNING: Use RMarkdown instead of Sweave 'Rnw' vignettes.
  Rnw vignette(s) found:
    • fdrame.Rnw
ℹ NOTE: 'sessionInfo' not found in vignette(s)
  Missing from file(s):
    • vignettes/fdrame.Rnw
* Checking package installation calls in R code...
* Checking for library/require of fdrame...
* Checking coding practice...
ℹ NOTE: Avoid 1:...; use seq_len() or seq_along()
  Found in files:
    • fdr.R (line 88, column 28)
    • ...
    • fdrgui.R (line 155, column 28)
ℹ NOTE: Avoid 'cat' and 'print' outside of 'show' methods
  Found in files:
    • print() in R/fdr.R (line 110, column 17)
    • ...
    • print() in R/fdrgui.R (line 275, column 25)
ℹ NOTE: Avoid the use of 'paste' in condition signals
  Found in files:
    • R/fdr.R (line 38, column 22)
    • ...
    • R/fdr.R (line 74, column 22)
ℹ NOTE: Avoid redundant 'stop' and 'warn*' in signal conditions
  Found in files:
    • R/fdr.R (line 49, column 36)
    • ...
    • R/fdr.R (line 456, column 22)
* Checking parsed R code in R directory, examples, vignettes...
ℹ NOTE: Avoid '<<-' if possible (found 70 times)
  • <<- in R/fdrgui.R (line 14, column 51)
  • ...
  • <<- in R/fdrgui.R (line 427, column 18)
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 6
functions greater than 50 lines.
  The longest 5 functions are:
    • fdr.gui() (R/fdrgui.R): 175 lines
    • ...
    • compute.t.statistic() (R/fdr.R): 77 lines
* Checking man page documentation...
! WARNING: Empty or missing \value sections found in man page(s).
  Found in files:
    • man/fdrgui.Rd
Warning in fun(libname, pkgname) : couldn't connect to display ":1.0"
✖ ERROR: At least 80% of man pages documenting exported objects must have
runnable examples.
  The following pages do not:
    • fdr-internal.Rd
* Checking package NEWS...
ℹ NOTE: Consider adding a NEWS file, so your package news will be included in
Bioconductor release announcements.
* Checking unit tests...
ℹ NOTE: Consider adding unit tests. We strongly encourage them. See
https://contributions.bioconductor.org/tests.html
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 141 lines (10%) are > 80 characters long.
  First few lines:
    • R/fdr.R#L1 ######################################## ...
    • ...
    • vignettes/fdrame.Rnw#L136 \item Yekutieli,D. and Benjamini,Y. (199 ...
ℹ NOTE: Consider 4 spaces instead of tabs; 834 lines (58%) contain tabs.
  First few lines:
    • R/fdr.R#L2 # # ...
    • ...
    • man/exp.arr.Rd#L19 http://www.stat.berkeley.edu/users/terr ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 29 lines (2%) are not.
  First few lines:
    • R/fdr.R#L115 ...
    • ...
    • vignettes/fdrame.Rnw#L110 \#\left(|t_i^{*j}|\geq |t_k|\right)\rig ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.49.4 results ───────────────────────────────────────────────────
✖ 2 ERRORS | ⚠ 3 WARNINGS | ℹ 16 NOTES
ℹ See the fdrame.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.